Wall clock time and date at job start Tue Mar 31 2020 15:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47418 * 2 1 4 4 N 1.46505 * 109.46858 * 119.99917 * 2 1 3 5 5 C 1.36036 * 126.35096 * 120.01590 * 4 2 1 6 6 C 1.50700 * 124.94846 * 359.97438 * 5 4 2 7 7 N 1.46900 * 109.47552 * 89.99946 * 6 5 4 8 8 C 1.46894 * 111.00096 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.46924 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.46752 * 304.99542 * 9 8 7 11 11 C 1.47193 * 109.47609 * 64.99511 * 9 8 7 12 12 N 7.14316 * 159.58222 * 181.55171 * 2 1 3 13 13 C 1.52999 * 109.47178 * 184.99908 * 9 8 7 14 14 C 1.50698 * 109.47527 * 174.99723 * 13 9 8 15 15 H 1.08005 * 119.99578 * 359.97438 * 14 13 9 16 16 C 1.37874 * 120.00373 * 180.02562 * 14 13 9 17 17 N 1.31512 * 120.00004 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00010 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46932 * 90.00449 * 18 16 14 20 20 H 1.48502 * 109.47326 * 210.00423 * 18 16 14 21 21 H 1.48500 * 109.46986 * 330.00327 * 18 16 14 22 22 N 1.30106 * 110.10195 * 179.97438 * 5 4 2 23 23 C 1.35787 * 109.64359 * 359.97438 * 22 5 4 24 24 C 1.39734 * 133.60143 * 179.97438 * 23 22 5 25 25 C 1.36605 * 119.88806 * 180.02562 * 24 23 22 26 26 C 1.38776 * 120.66622 * 359.97438 * 25 24 23 27 27 C 1.37851 * 120.45485 * 0.03810 * 26 25 24 28 28 C 1.38058 * 126.34584 * 299.97134 * 4 2 1 29 29 H 1.09004 * 109.47205 * 300.00722 * 1 2 3 30 30 H 1.09005 * 109.46787 * 59.99723 * 1 2 3 31 31 H 1.08992 * 109.47661 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47075 * 239.99511 * 2 1 3 33 33 H 1.09001 * 109.47013 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47111 * 299.99443 * 3 2 1 35 35 H 1.08996 * 109.47397 * 59.99708 * 3 2 1 36 36 H 1.09004 * 109.46991 * 210.00395 * 6 5 4 37 37 H 1.09004 * 109.47138 * 329.99711 * 6 5 4 38 38 H 1.00895 * 110.99604 * 303.95554 * 7 6 5 39 39 H 1.08999 * 109.46967 * 299.99602 * 8 7 6 40 40 H 1.09001 * 109.47370 * 59.99835 * 8 7 6 41 41 H 1.08995 * 109.47109 * 294.99548 * 13 9 8 42 42 H 1.09005 * 109.47354 * 54.99461 * 13 9 8 43 43 H 0.96999 * 120.00135 * 179.97438 * 17 16 14 44 44 H 1.08009 * 120.05649 * 0.29744 * 24 23 22 45 45 H 1.08001 * 119.66343 * 179.97438 * 25 24 23 46 46 H 1.08002 * 119.77372 * 180.02562 * 26 25 24 47 47 H 1.08001 * 120.15787 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.8037 -1.8010 1.2221 6 6 3.3155 -2.5250 0.0035 7 7 4.6124 -1.9604 -0.3930 8 6 5.1427 -2.6429 -1.5807 9 6 6.4914 -2.0292 -1.9619 10 1 6.3766 -0.9532 -2.0938 11 6 7.4692 -2.2909 -0.8933 12 7 8.2243 -2.4911 -0.0675 13 6 6.9847 -2.6534 -3.2687 14 6 8.2503 -1.9637 -3.7087 15 1 8.6614 -1.1600 -3.1157 16 6 8.8827 -2.3577 -4.8687 17 7 9.9874 -1.7561 -5.2524 18 14 8.1713 -3.7471 -5.8947 19 1 7.2249 -3.1899 -6.8943 20 1 9.2705 -4.4576 -6.5962 21 1 7.4528 -4.6985 -5.0093 22 7 3.0488 -2.1468 2.4522 23 6 2.4370 -1.2807 3.3004 24 6 2.3676 -1.1823 4.6925 25 6 1.6526 -0.1709 5.2686 26 6 0.9919 0.7645 4.4848 27 6 1.0462 0.6870 3.1095 28 6 1.7672 -0.3347 2.5063 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 3.4350 -3.5838 0.2334 37 1 2.6036 -2.4088 -0.8138 38 1 4.5414 -0.9662 -0.5491 39 1 5.2750 -3.7025 -1.3622 40 1 4.4434 -2.5272 -2.4088 41 1 7.1842 -3.7135 -3.1124 42 1 6.2212 -2.5370 -4.0380 43 1 10.4326 -2.0335 -6.0683 44 1 2.8821 -1.9021 5.3120 45 1 1.6011 -0.0985 6.3449 46 1 0.4311 1.5584 4.9554 47 1 0.5305 1.4177 2.5041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338487883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:32 Heat of formation + Delta-G solvation = 90.752403 kcal Electronic energy + Delta-G solvation = -26808.830133 eV Core-core repulsion = 23184.942484 eV Total energy + Delta-G solvation = -3623.887649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.45152 -38.02514 -37.33599 -36.30671 -35.26568 -33.58886 -31.97683 -31.77550 -30.09857 -29.82892 -27.80017 -27.66525 -25.53136 -23.44088 -22.75491 -22.16952 -21.66112 -21.39406 -20.16017 -17.58283 -17.36739 -17.01607 -16.88623 -15.97924 -15.73191 -15.19643 -14.87250 -14.84702 -14.59433 -14.33540 -14.06331 -13.89445 -13.68392 -13.35290 -13.05959 -12.84220 -12.77971 -12.58576 -12.44756 -12.22779 -12.14366 -12.06634 -11.95944 -11.74036 -11.62430 -11.38997 -11.32645 -11.23081 -10.80553 -10.52499 -10.44920 -10.00912 -9.97884 -9.81500 -9.36202 -8.66045 -8.62348 -8.44815 -8.24590 -6.13177 -4.14192 0.75948 1.35303 2.29149 2.56617 3.22712 3.32579 3.33028 3.66469 3.72218 3.78956 3.87365 4.05409 4.12067 4.27209 4.35479 4.42830 4.50593 4.73260 4.76242 4.79774 4.85971 5.01433 5.03331 5.11156 5.20681 5.21424 5.22993 5.27623 5.29162 5.39503 5.44707 5.55522 5.58187 5.63145 5.69160 5.75755 5.94026 6.12047 6.22609 6.26076 6.32561 6.38207 6.70258 6.72867 6.86537 6.97034 7.07891 7.17201 7.60344 7.81180 8.37863 8.55746 8.90540 9.46299 10.99931 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019054 B = 0.002536 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.165872 B =11039.483169 C =11668.045490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.130 3.870 3 C -0.168 4.168 4 N -0.482 5.482 5 C 0.290 3.710 6 C 0.137 3.863 7 N -0.682 5.682 8 C 0.065 3.935 9 C 0.022 3.978 10 H 0.104 0.896 11 C 0.248 3.752 12 N -0.465 5.465 13 C -0.004 4.004 14 C -0.529 4.529 15 H 0.074 0.926 16 C 0.071 3.929 17 N -0.896 5.896 18 Si 0.878 3.122 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.263 1.263 22 N -0.474 5.474 23 C 0.045 3.955 24 C -0.062 4.062 25 C -0.133 4.133 26 C -0.106 4.106 27 C -0.112 4.112 28 C 0.055 3.945 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.052 0.948 38 H 0.342 0.658 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.027 0.973 42 H 0.032 0.968 43 H 0.265 0.735 44 H 0.127 0.873 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.379 5.526 12.049 29.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.028 3.972 3 C -0.225 4.225 4 N -0.173 5.173 5 C 0.024 3.976 6 C 0.007 3.993 7 N -0.314 5.314 8 C -0.065 4.065 9 C 0.000 4.000 10 H 0.121 0.879 11 C -0.070 4.070 12 N -0.141 5.141 13 C -0.043 4.043 14 C -0.566 4.566 15 H 0.092 0.908 16 C -0.131 4.131 17 N -0.534 5.534 18 Si 0.705 3.295 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.188 1.188 22 N -0.193 5.193 23 C -0.074 4.074 24 C -0.081 4.081 25 C -0.153 4.153 26 C -0.126 4.126 27 C -0.133 4.133 28 C -0.054 4.054 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.128 0.872 37 H 0.070 0.930 38 H 0.160 0.840 39 H 0.102 0.898 40 H 0.071 0.929 41 H 0.045 0.955 42 H 0.051 0.949 43 H 0.075 0.925 44 H 0.145 0.855 45 H 0.144 0.856 46 H 0.145 0.855 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -24.291 4.204 13.738 28.222 hybrid contribution -1.469 0.535 -1.962 2.509 sum -25.761 4.739 11.776 28.719 Atomic orbital electron populations 1.22208 0.93399 1.03253 1.03455 1.21447 0.95500 0.94274 0.86012 1.22228 1.02667 0.94204 1.03428 1.45560 1.42380 1.24371 1.05038 1.23437 0.92181 0.86684 0.95254 1.20384 0.90081 0.99456 0.89394 1.60395 1.24524 1.08312 1.38212 1.22161 0.94789 0.99669 0.89884 1.18916 0.87880 1.02405 0.90816 0.87850 1.28662 0.93094 0.92667 0.92528 1.81049 1.10939 1.09408 1.12714 1.19635 0.97737 0.96986 0.89982 1.21016 1.07316 1.19690 1.08614 0.90780 1.24996 0.94586 0.96220 0.97335 1.69904 1.17952 1.41638 1.23939 0.86816 0.79069 0.82975 0.80687 1.20103 1.21290 1.18793 1.70458 1.23060 1.27224 0.98556 1.19119 0.99812 0.94257 0.94191 1.20049 0.98608 0.98495 0.90992 1.20609 0.99292 0.95490 0.99941 1.20864 0.99972 0.99288 0.92485 1.19989 1.01248 0.97354 0.94662 1.18793 1.02947 0.99629 0.84066 0.91553 0.90288 0.91764 0.87952 0.91277 0.90223 0.91581 0.87207 0.93020 0.83977 0.89782 0.92900 0.95506 0.94944 0.92535 0.85467 0.85552 0.85547 0.86251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 9.25 37.15 0.34 -0.57 16 2 C 0.13 0.90 3.51 -67.93 -0.24 0.66 16 3 C -0.17 -1.07 9.25 37.16 0.34 -0.72 16 4 N -0.48 -4.96 2.65 -104.11 -0.28 -5.23 16 5 C 0.29 3.57 7.37 -154.83 -1.14 2.43 16 6 C 0.14 1.41 5.81 -4.98 -0.03 1.38 16 7 N -0.68 -8.19 6.19 -115.06 -0.71 -8.91 16 8 C 0.06 0.81 5.05 -3.83 -0.02 0.79 16 9 C 0.02 0.37 2.35 -93.41 -0.22 0.15 16 10 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 11 C 0.25 5.15 13.67 -20.74 -0.28 4.86 16 12 N -0.46 -10.83 18.54 42.18 0.78 -10.04 16 13 C 0.00 -0.09 3.49 -27.88 -0.10 -0.19 16 14 C -0.53 -13.98 9.15 -34.44 -0.32 -14.30 16 15 H 0.07 2.17 7.84 -52.48 -0.41 1.76 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -26.82 13.96 55.43 0.77 -26.04 16 18 Si 0.88 20.25 27.47 -169.99 -4.67 15.58 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 22 N -0.47 -7.18 11.27 -8.24 -0.09 -7.27 16 23 C 0.04 0.62 7.23 -84.70 -0.61 0.00 16 24 C -0.06 -0.71 10.05 -39.61 -0.40 -1.11 16 25 C -0.13 -1.20 9.96 -39.97 -0.40 -1.59 16 26 C -0.11 -0.88 10.03 -39.52 -0.40 -1.28 16 27 C -0.11 -1.03 8.77 -39.50 -0.35 -1.37 16 28 C 0.05 0.63 6.21 -83.98 -0.52 0.11 16 29 H 0.07 0.39 6.34 -51.93 -0.33 0.06 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 0.59 6.62 -51.93 -0.34 0.25 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.44 6.33 -51.93 -0.33 0.11 16 36 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.05 0.38 7.03 -51.93 -0.37 0.02 16 38 H 0.34 3.73 8.72 -39.29 -0.34 3.39 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.03 0.57 7.20 -51.93 -0.37 0.19 16 42 H 0.03 0.61 7.57 -51.93 -0.39 0.21 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 44 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 45 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 46 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 47 H 0.12 0.84 6.04 -52.49 -0.32 0.52 16 LS Contribution 388.77 15.07 5.86 5.86 Total: -1.00 -34.82 388.77 -9.78 -44.60 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -7.02 Total: 0.35 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -4.43 Total: -8.89 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.47 Total: -57.50 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.67 Total: 15.58 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.82 -9.78 -44.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338487883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.352 kcal (2) G-P(sol) polarization free energy of solvation -34.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds