Wall clock time and date at job start Tue Mar 31 2020 15:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47418 * 2 1 4 4 N 1.46505 * 109.46858 * 119.99917 * 2 1 3 5 5 C 1.36036 * 126.35096 * 120.01590 * 4 2 1 6 6 C 1.50700 * 124.94846 * 359.97438 * 5 4 2 7 7 N 1.46900 * 109.47552 * 89.99946 * 6 5 4 8 8 C 1.46894 * 111.00096 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.46924 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.46752 * 304.99542 * 9 8 7 11 11 C 1.47193 * 109.47609 * 64.99511 * 9 8 7 12 12 N 7.14316 * 159.58222 * 181.55171 * 2 1 3 13 13 C 1.52999 * 109.47178 * 184.99908 * 9 8 7 14 14 C 1.50698 * 109.47527 * 174.99723 * 13 9 8 15 15 H 1.08005 * 119.99578 * 359.97438 * 14 13 9 16 16 C 1.37874 * 120.00373 * 180.02562 * 14 13 9 17 17 N 1.31512 * 120.00004 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00010 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46932 * 90.00449 * 18 16 14 20 20 H 1.48502 * 109.47326 * 210.00423 * 18 16 14 21 21 H 1.48500 * 109.46986 * 330.00327 * 18 16 14 22 22 N 1.30106 * 110.10195 * 179.97438 * 5 4 2 23 23 C 1.35787 * 109.64359 * 359.97438 * 22 5 4 24 24 C 1.39734 * 133.60143 * 179.97438 * 23 22 5 25 25 C 1.36605 * 119.88806 * 180.02562 * 24 23 22 26 26 C 1.38776 * 120.66622 * 359.97438 * 25 24 23 27 27 C 1.37851 * 120.45485 * 0.03810 * 26 25 24 28 28 C 1.38058 * 126.34584 * 299.97134 * 4 2 1 29 29 H 1.09004 * 109.47205 * 300.00722 * 1 2 3 30 30 H 1.09005 * 109.46787 * 59.99723 * 1 2 3 31 31 H 1.08992 * 109.47661 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47075 * 239.99511 * 2 1 3 33 33 H 1.09001 * 109.47013 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47111 * 299.99443 * 3 2 1 35 35 H 1.08996 * 109.47397 * 59.99708 * 3 2 1 36 36 H 1.09004 * 109.46991 * 210.00395 * 6 5 4 37 37 H 1.09004 * 109.47138 * 329.99711 * 6 5 4 38 38 H 1.00895 * 110.99604 * 303.95554 * 7 6 5 39 39 H 1.08999 * 109.46967 * 299.99602 * 8 7 6 40 40 H 1.09001 * 109.47370 * 59.99835 * 8 7 6 41 41 H 1.08995 * 109.47109 * 294.99548 * 13 9 8 42 42 H 1.09005 * 109.47354 * 54.99461 * 13 9 8 43 43 H 0.96999 * 120.00135 * 179.97438 * 17 16 14 44 44 H 1.08009 * 120.05649 * 0.29744 * 24 23 22 45 45 H 1.08001 * 119.66343 * 179.97438 * 25 24 23 46 46 H 1.08002 * 119.77372 * 180.02562 * 26 25 24 47 47 H 1.08001 * 120.15787 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.8037 -1.8010 1.2221 6 6 3.3155 -2.5250 0.0035 7 7 4.6124 -1.9604 -0.3930 8 6 5.1427 -2.6429 -1.5807 9 6 6.4914 -2.0292 -1.9619 10 1 6.3766 -0.9532 -2.0938 11 6 7.4692 -2.2909 -0.8933 12 7 8.2243 -2.4911 -0.0675 13 6 6.9847 -2.6534 -3.2687 14 6 8.2503 -1.9637 -3.7087 15 1 8.6614 -1.1600 -3.1157 16 6 8.8827 -2.3577 -4.8687 17 7 9.9874 -1.7561 -5.2524 18 14 8.1713 -3.7471 -5.8947 19 1 7.2249 -3.1899 -6.8943 20 1 9.2705 -4.4576 -6.5962 21 1 7.4528 -4.6985 -5.0093 22 7 3.0488 -2.1468 2.4522 23 6 2.4370 -1.2807 3.3004 24 6 2.3676 -1.1823 4.6925 25 6 1.6526 -0.1709 5.2686 26 6 0.9919 0.7645 4.4848 27 6 1.0462 0.6870 3.1095 28 6 1.7672 -0.3347 2.5063 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 3.4350 -3.5838 0.2334 37 1 2.6036 -2.4088 -0.8138 38 1 4.5414 -0.9662 -0.5491 39 1 5.2750 -3.7025 -1.3622 40 1 4.4434 -2.5272 -2.4088 41 1 7.1842 -3.7135 -3.1124 42 1 6.2212 -2.5370 -4.0380 43 1 10.4326 -2.0335 -6.0683 44 1 2.8821 -1.9021 5.3120 45 1 1.6011 -0.0985 6.3449 46 1 0.4311 1.5584 4.9554 47 1 0.5305 1.4177 2.5041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338487883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:31 Heat of formation + Delta-G solvation = 68.413553 kcal Electronic energy + Delta-G solvation = -26809.798819 eV Core-core repulsion = 23184.942484 eV Total energy + Delta-G solvation = -3624.856335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.22359 -39.00117 -38.37644 -36.96635 -36.57493 -35.34156 -33.66228 -32.47258 -31.00087 -30.66932 -28.98428 -28.22873 -26.72667 -24.08651 -23.90279 -23.30809 -22.88263 -22.29176 -20.86332 -18.91492 -18.60893 -18.30782 -17.73510 -16.85237 -16.63800 -16.35912 -15.96946 -15.56228 -15.48717 -15.37158 -15.22801 -14.83818 -14.58964 -14.41143 -14.24372 -14.05813 -13.89363 -13.48590 -13.39354 -13.28978 -13.19616 -13.10925 -12.94771 -12.66815 -12.64457 -12.35275 -12.34135 -12.29424 -12.08230 -11.92097 -11.64555 -11.57141 -11.27713 -11.26327 -10.83513 -10.71059 -9.45873 -9.22117 -9.03612 -8.22797 -6.28636 -0.00712 0.60336 1.43913 1.48497 1.58252 1.59852 1.75339 2.06780 2.14216 2.43183 2.90487 3.06270 3.13672 3.27348 3.37930 3.51548 3.56048 3.94444 3.97841 4.06470 4.12189 4.16039 4.24647 4.33455 4.41224 4.50448 4.54082 4.60891 4.63034 4.69041 4.77117 4.77965 4.79618 4.88700 4.94525 4.95277 5.17061 5.21581 5.25787 5.26022 5.47840 5.50511 5.60205 5.63815 5.64822 5.86975 6.00535 6.24191 6.27593 6.34341 6.79497 6.92757 6.97792 7.35908 8.94347 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019054 B = 0.002536 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.165872 B =11039.483169 C =11668.045490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.123 3.877 3 C -0.164 4.164 4 N -0.475 5.475 5 C 0.281 3.719 6 C 0.144 3.856 7 N -0.702 5.702 8 C 0.078 3.922 9 C 0.025 3.975 10 H 0.117 0.883 11 C 0.260 3.740 12 N -0.521 5.521 13 C -0.002 4.002 14 C -0.531 4.531 15 H 0.026 0.974 16 C 0.000 4.000 17 N -0.957 5.957 18 Si 0.951 3.049 19 H -0.254 1.254 20 H -0.299 1.299 21 H -0.235 1.235 22 N -0.526 5.526 23 C 0.004 3.996 24 C -0.091 4.091 25 C -0.127 4.127 26 C -0.104 4.104 27 C -0.113 4.113 28 C 0.044 3.956 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.118 0.882 33 H 0.051 0.949 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.348 0.652 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.027 0.973 42 H 0.070 0.930 43 H 0.264 0.736 44 H 0.122 0.878 45 H 0.153 0.847 46 H 0.161 0.839 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.500 5.802 10.829 32.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.022 3.978 3 C -0.222 4.222 4 N -0.166 5.166 5 C 0.015 3.985 6 C 0.014 3.986 7 N -0.336 5.336 8 C -0.051 4.051 9 C 0.004 3.996 10 H 0.135 0.865 11 C -0.056 4.056 12 N -0.199 5.199 13 C -0.041 4.041 14 C -0.569 4.569 15 H 0.044 0.956 16 C -0.196 4.196 17 N -0.597 5.597 18 Si 0.773 3.227 19 H -0.178 1.178 20 H -0.226 1.226 21 H -0.158 1.158 22 N -0.247 5.247 23 C -0.115 4.115 24 C -0.111 4.111 25 C -0.147 4.147 26 C -0.123 4.123 27 C -0.134 4.134 28 C -0.066 4.066 29 H 0.080 0.920 30 H 0.120 0.880 31 H 0.075 0.925 32 H 0.136 0.864 33 H 0.070 0.930 34 H 0.121 0.879 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.167 0.833 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.045 0.955 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.140 0.860 45 H 0.170 0.830 46 H 0.179 0.821 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -28.460 4.498 12.527 31.419 hybrid contribution -0.166 0.586 -1.471 1.592 sum -28.626 5.084 11.057 31.105 Atomic orbital electron populations 1.22186 0.92123 1.03072 1.04386 1.21791 0.96490 0.94372 0.85161 1.22219 1.01529 0.94072 1.04374 1.45737 1.41529 1.23728 1.05566 1.23730 0.92338 0.87358 0.95073 1.20411 0.89970 0.98582 0.89681 1.60237 1.26103 1.08853 1.38401 1.22022 0.92653 0.98956 0.91517 1.19108 0.89135 1.03439 0.87967 0.86502 1.29611 0.92580 0.91108 0.92340 1.81044 1.12752 1.11368 1.14735 1.19590 0.95824 0.96267 0.92420 1.21418 1.09372 1.18457 1.07651 0.95576 1.26083 0.94919 0.99432 0.99181 1.70100 1.20369 1.44317 1.24947 0.85661 0.78370 0.79441 0.79209 1.17813 1.22616 1.15798 1.70365 1.24996 1.29118 1.00205 1.19551 1.01264 0.95387 0.95255 1.20266 1.00258 0.99908 0.90677 1.20966 0.97858 0.94405 1.01441 1.21325 0.99210 0.99491 0.92267 1.20355 1.00652 0.96987 0.95404 1.19080 1.03188 0.99841 0.84475 0.91955 0.87982 0.92487 0.86370 0.92997 0.87930 0.91959 0.87919 0.89232 0.83296 0.89898 0.88656 0.95454 0.91198 0.92733 0.86036 0.82955 0.82125 0.83885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.25 71.98 0.67 -0.61 16 2 C 0.12 1.36 3.51 44.99 0.16 1.52 16 3 C -0.16 -1.68 9.25 71.98 0.67 -1.01 16 4 N -0.48 -9.19 2.65 -483.30 -1.28 -10.47 16 5 C 0.28 6.79 7.37 137.92 1.02 7.81 16 6 C 0.14 2.65 5.81 85.56 0.50 3.15 16 7 N -0.70 -15.41 6.19 -517.94 -3.21 -18.62 16 8 C 0.08 1.67 5.05 86.30 0.44 2.10 16 9 C 0.03 0.81 2.35 -12.60 -0.03 0.78 16 10 H 0.12 3.43 8.14 -2.38 -0.02 3.41 16 11 C 0.26 10.83 13.67 89.43 1.22 12.05 16 12 N -0.52 -25.01 18.54 20.01 0.37 -24.64 16 13 C 0.00 -0.08 3.49 29.85 0.10 0.03 16 14 C -0.53 -28.19 9.15 25.60 0.23 -27.95 16 15 H 0.03 1.58 7.84 -2.91 -0.02 1.56 16 16 C 0.00 0.01 5.47 84.65 0.46 0.47 16 17 N -0.96 -59.01 13.96 21.45 0.30 -58.71 16 18 Si 0.95 40.52 27.47 68.60 1.88 42.40 16 19 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 20 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 21 H -0.24 -8.88 6.54 99.48 0.65 -8.23 16 22 N -0.53 -16.59 11.27 -179.97 -2.03 -18.62 16 23 C 0.00 0.10 7.23 39.45 0.29 0.39 16 24 C -0.09 -2.20 10.05 22.25 0.22 -1.97 16 25 C -0.13 -2.15 9.96 22.02 0.22 -1.93 16 26 C -0.10 -1.47 10.03 22.31 0.22 -1.25 16 27 C -0.11 -1.87 8.77 22.32 0.20 -1.67 16 28 C 0.04 0.99 6.21 38.86 0.24 1.23 16 29 H 0.06 0.56 6.34 -2.38 -0.02 0.54 16 30 H 0.10 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.12 0.92 6.62 -2.39 -0.02 0.90 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.06 0.68 6.33 -2.39 -0.02 0.66 16 36 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.09 0.96 7.03 -2.38 -0.02 0.94 16 38 H 0.35 6.84 8.72 -89.70 -0.78 6.06 16 39 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.03 1.06 7.20 -2.39 -0.02 1.05 16 42 H 0.07 2.25 7.57 -2.38 -0.02 2.23 16 43 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 44 H 0.12 2.83 8.06 -2.91 -0.02 2.80 16 45 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 46 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 47 H 0.14 1.59 6.04 -2.91 -0.02 1.57 16 Total: -1.00 -82.29 388.77 3.01 -79.29 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.15 Total: 16.24 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 6.82 Total: -6.88 kcal Atomic # 7 Polarization: -125.21 SS G_CDS: -5.85 Total: -131.06 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 1.88 Total: 42.40 kcal Total: -82.29 3.01 -79.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338487883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.701 kcal (2) G-P(sol) polarization free energy of solvation -82.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds