Wall clock time and date at job start Tue Mar 31 2020 15:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50699 * 119.99844 * 2 1 4 4 N 1.46507 * 109.46846 * 127.88743 * 3 2 1 5 5 C 1.37747 * 127.14329 * 270.17601 * 4 3 2 6 6 C 1.47092 * 126.48964 * 0.05391 * 5 4 3 7 7 C 1.40334 * 119.91510 * 16.30630 * 6 5 4 8 8 C 1.36046 * 120.08931 * 179.75939 * 7 6 5 9 9 C 1.41041 * 119.91245 * 0.49750 * 8 7 6 10 10 C 1.40831 * 120.08772 * 179.74174 * 9 8 7 11 11 H 1.08004 * 120.00231 * 214.26157 * 10 9 8 12 12 C 1.39895 * 120.00061 * 34.25852 * 10 9 8 13 13 N 1.30865 * 120.00377 * 357.62060 * 12 10 9 14 14 Si 1.86802 * 120.00045 * 177.62285 * 12 10 9 15 15 H 1.48496 * 109.47021 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47191 * 120.00118 * 14 12 10 17 17 H 1.48500 * 109.46974 * 239.99936 * 14 12 10 18 18 C 1.41046 * 119.82855 * 359.75646 * 9 8 7 19 19 C 1.36045 * 119.91290 * 0.02562 * 18 9 8 20 20 N 1.31768 * 107.02743 * 180.02562 * 5 4 3 21 21 N 1.28520 * 109.85827 * 359.97438 * 20 5 4 22 22 C 1.31783 * 110.08124 * 0.02562 * 21 20 5 23 23 N 1.37974 * 126.34198 * 179.97438 * 22 21 20 24 24 C 1.46905 * 110.99976 * 123.97718 * 23 22 21 25 25 C 1.46905 * 110.99986 * 0.02853 * 23 22 21 26 26 C 1.52996 * 109.46996 * 189.99801 * 25 23 22 27 27 C 1.53004 * 109.47007 * 179.97438 * 26 25 23 28 28 H 1.08007 * 120.00052 * 185.87243 * 1 2 3 29 29 H 1.08001 * 120.00273 * 5.85850 * 1 2 3 30 30 H 1.08006 * 120.00033 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47322 * 7.88912 * 3 2 1 32 32 H 1.08997 * 109.47537 * 247.88689 * 3 2 1 33 33 H 1.08001 * 119.95410 * 0.02562 * 7 6 5 34 34 H 1.08006 * 120.04604 * 180.25441 * 8 7 6 35 35 H 0.96996 * 120.00725 * 179.97438 * 13 12 10 36 36 H 1.08002 * 120.04160 * 179.97438 * 18 9 8 37 37 H 1.08004 * 119.95880 * 180.02562 * 19 18 9 38 38 H 1.09000 * 109.46561 * 60.00336 * 24 23 22 39 39 H 1.08993 * 109.47050 * 180.02562 * 24 23 22 40 40 H 1.08996 * 109.47155 * 300.00601 * 24 23 22 41 41 H 1.08998 * 109.46933 * 309.99503 * 25 23 22 42 42 H 1.08993 * 109.47090 * 69.99739 * 25 23 22 43 43 H 1.09004 * 109.47255 * 299.99985 * 26 25 23 44 44 H 1.09007 * 109.47469 * 59.99915 * 26 25 23 45 45 H 1.09004 * 109.46864 * 60.00675 * 27 26 25 46 46 H 1.08999 * 109.47047 * 179.97438 * 27 26 25 47 47 H 1.08990 * 109.47441 * 300.00339 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0422 1.3039 1.0902 5 6 2.8464 1.7333 2.3842 6 6 1.6032 2.2856 2.9439 7 6 0.3890 2.1055 2.2639 8 6 -0.7637 2.6105 2.7808 9 6 -0.7356 3.3249 3.9966 10 6 -1.9258 3.8540 4.5323 11 1 -1.9060 4.7891 5.0724 12 6 -3.1336 3.1684 4.3648 13 7 -3.1658 2.0594 3.6707 14 14 -4.7006 3.8359 5.1318 15 1 -4.3982 5.0942 5.8600 16 1 -5.6966 4.1092 4.0648 17 1 -5.2529 2.8352 6.0799 18 6 0.4877 3.5084 4.6744 19 6 1.6354 2.9966 4.1534 20 7 3.9833 1.5553 3.0261 21 7 4.8589 1.0516 2.2316 22 6 4.3365 0.8774 1.0343 23 7 4.9798 0.3598 -0.0711 24 6 4.2534 -0.7984 -0.6086 25 6 6.3705 0.0081 0.2458 26 6 7.1197 -0.3239 -1.0462 27 6 8.5683 -0.6895 -0.7162 28 1 -0.5400 -0.9305 0.0957 29 1 -0.5401 0.9304 -0.0955 30 1 1.8500 -0.9354 -0.0004 31 1 1.3636 2.1287 0.1410 32 1 2.5801 1.4264 -0.9520 33 1 0.3688 1.5615 1.3311 34 1 -1.6985 2.4680 2.2589 35 1 -4.0032 1.5838 3.5548 36 1 0.5132 4.0553 5.6054 37 1 2.5724 3.1363 4.6720 38 1 3.2483 -0.4935 -0.9001 39 1 4.7823 -1.1871 -1.4787 40 1 4.1908 -1.5741 0.1546 41 1 6.8546 0.8503 0.7403 42 1 6.3846 -0.8584 0.9069 43 1 6.6356 -1.1660 -1.5408 44 1 7.1057 0.5427 -1.7073 45 1 8.5827 -1.5560 -0.0550 46 1 9.1019 -0.9265 -1.6366 47 1 9.0521 0.1528 -0.2218 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339036943.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:09 Heat of formation + Delta-G solvation = 135.326826 kcal Electronic energy + Delta-G solvation = -27584.320973 eV Core-core repulsion = 23962.366215 eV Total energy + Delta-G solvation = -3621.954757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.30364 -38.10916 -37.65329 -36.18666 -33.96889 -33.38778 -32.47639 -30.73377 -29.70767 -28.63083 -27.37859 -26.69472 -25.52270 -24.62705 -22.19400 -21.73137 -21.17109 -20.30388 -19.85573 -19.57452 -17.50855 -17.21893 -16.29268 -15.93056 -15.47272 -15.39548 -15.24403 -14.91462 -14.38515 -14.11671 -13.97041 -13.53993 -13.20159 -13.15390 -12.78767 -12.58836 -12.40115 -12.17787 -12.02905 -11.89572 -11.74393 -11.39389 -11.33743 -11.25802 -11.22630 -10.98657 -10.87225 -10.81187 -10.67761 -10.23722 -9.92232 -9.80407 -9.62090 -9.47144 -9.38944 -9.21976 -8.21066 -7.72844 -7.03963 -6.86840 -4.57638 1.80590 2.02276 2.68178 2.78353 2.97015 2.98046 3.01582 3.03558 3.64295 3.80495 3.84722 4.53798 4.68587 4.72733 4.79509 4.84636 4.90187 5.08501 5.14179 5.19242 5.28210 5.36684 5.42372 5.49685 5.54683 5.60292 5.66735 5.68282 5.78134 5.84101 5.89246 5.97860 6.10366 6.15253 6.31200 6.37399 6.45818 6.55436 6.74719 6.77837 6.89737 6.96015 7.06242 7.21665 7.46832 7.50859 7.75129 7.87185 7.90094 8.09933 8.43588 8.68267 8.75752 9.36355 10.02398 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.026150 B = 0.002835 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.471276 B = 9874.047697 C =10760.076172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.201 4.201 3 C 0.134 3.866 4 N -0.480 5.480 5 C 0.283 3.717 6 C -0.169 4.169 7 C -0.102 4.102 8 C -0.159 4.159 9 C 0.121 3.879 10 C -0.446 4.446 11 H 0.082 0.918 12 C 0.069 3.931 13 N -0.796 5.796 14 Si 0.918 3.082 15 H -0.260 1.260 16 H -0.272 1.272 17 H -0.272 1.272 18 C -0.221 4.221 19 C -0.039 4.039 20 N -0.312 5.312 21 N -0.323 5.323 22 C 0.324 3.676 23 N -0.451 5.451 24 C 0.005 3.995 25 C 0.072 3.928 26 C -0.122 4.122 27 C -0.150 4.150 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.130 0.870 35 H 0.281 0.719 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.037 0.963 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.063 -5.849 -11.867 15.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.220 4.220 3 C 0.011 3.989 4 N -0.174 5.174 5 C 0.022 3.978 6 C -0.174 4.174 7 C -0.122 4.122 8 C -0.178 4.178 9 C 0.117 3.883 10 C -0.476 4.476 11 H 0.100 0.900 12 C -0.148 4.148 13 N -0.421 5.421 14 Si 0.743 3.257 15 H -0.183 1.183 16 H -0.197 1.197 17 H -0.197 1.197 18 C -0.240 4.240 19 C -0.059 4.059 20 N -0.151 5.151 21 N -0.168 5.168 22 C -0.032 4.032 23 N -0.174 5.174 24 C -0.143 4.143 25 C -0.055 4.055 26 C -0.160 4.160 27 C -0.208 4.208 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.116 0.884 33 H 0.127 0.873 34 H 0.148 0.852 35 H 0.092 0.908 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.055 0.945 41 H 0.109 0.891 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.002 -5.698 -11.221 15.473 hybrid contribution -1.724 -0.552 -0.186 1.820 sum 7.278 -6.250 -11.407 14.905 Atomic orbital electron populations 1.24052 0.95482 1.03157 0.95332 1.23173 0.96482 0.97872 1.04468 1.21059 0.91127 0.97725 0.88983 1.46075 1.09792 1.50320 1.11254 1.23152 0.96560 0.98575 0.79505 1.16949 0.87212 1.12722 1.00478 1.21194 0.92369 0.99483 0.99123 1.21156 0.96815 1.03211 0.96647 1.17855 0.92022 0.88789 0.89611 1.19663 0.91473 1.06935 1.29527 0.90016 1.25988 1.00895 0.94174 0.93784 1.69774 1.28527 1.13147 1.30693 0.86084 0.80167 0.80008 0.79477 1.18322 1.19739 1.19749 1.20810 0.93177 1.09006 1.01040 1.20336 0.97410 0.94940 0.93244 1.74489 0.97597 1.19515 1.23534 1.74571 1.25127 1.20177 0.96927 1.22286 0.83636 1.04757 0.92510 1.58500 1.03443 1.30784 1.24703 1.22977 1.00139 0.90945 1.00209 1.22101 0.84796 1.01682 0.96952 1.21592 0.95400 1.01816 0.97197 1.21707 0.95780 1.01748 1.01535 0.87440 0.87213 0.86722 0.87145 0.88385 0.87277 0.85202 0.90763 0.88131 0.87899 0.89697 0.89729 0.94452 0.89138 0.93316 0.91938 0.91037 0.92679 0.92477 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 12.70 29.02 0.37 -1.39 16 2 C -0.20 -2.57 8.22 -36.02 -0.30 -2.86 16 3 C 0.13 1.89 4.91 -5.19 -0.03 1.87 16 4 N -0.48 -8.64 2.81 -116.10 -0.33 -8.96 16 5 C 0.28 6.13 7.70 -153.51 -1.18 4.94 16 6 C -0.17 -3.81 5.89 -104.73 -0.62 -4.43 16 7 C -0.10 -2.21 8.65 -39.58 -0.34 -2.55 16 8 C -0.16 -3.78 8.58 -39.31 -0.34 -4.11 16 9 C 0.12 3.01 5.55 -106.79 -0.59 2.42 16 10 C -0.45 -11.01 9.01 -37.98 -0.34 -11.35 16 11 H 0.08 1.94 7.85 -52.48 -0.41 1.53 16 12 C 0.07 1.61 5.40 -17.34 -0.09 1.52 16 13 N -0.80 -18.98 10.61 55.54 0.59 -18.39 16 14 Si 0.92 17.56 29.56 -169.99 -5.02 12.54 16 15 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 16 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 17 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 18 C -0.22 -5.23 9.73 -39.31 -0.38 -5.61 16 19 C -0.04 -0.90 9.63 -39.58 -0.38 -1.28 16 20 N -0.31 -7.13 11.98 32.53 0.39 -6.74 16 21 N -0.32 -6.74 11.14 30.28 0.34 -6.40 16 22 C 0.32 5.77 7.18 -319.12 -2.29 3.47 16 23 N -0.45 -6.18 4.79 -182.44 -0.87 -7.06 16 24 C 0.00 0.05 8.52 60.07 0.51 0.56 16 25 C 0.07 0.87 4.42 -3.82 -0.02 0.86 16 26 C -0.12 -1.08 5.86 -26.73 -0.16 -1.23 16 27 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 28 H 0.11 1.19 8.06 -52.48 -0.42 0.77 16 29 H 0.11 1.37 7.07 -52.49 -0.37 1.00 16 30 H 0.12 1.38 6.25 -52.48 -0.33 1.05 16 31 H 0.11 1.63 5.72 -51.93 -0.30 1.34 16 32 H 0.10 1.17 7.55 -51.93 -0.39 0.78 16 33 H 0.11 2.01 1.35 -52.49 -0.07 1.94 16 34 H 0.13 3.14 6.15 -52.48 -0.32 2.82 16 35 H 0.28 6.09 8.30 -40.82 -0.34 5.75 16 36 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 37 H 0.10 2.28 7.93 -52.48 -0.42 1.86 16 38 H 0.08 0.89 3.47 -51.93 -0.18 0.71 16 39 H 0.08 0.70 6.30 -51.93 -0.33 0.37 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 1.25 7.74 -51.93 -0.40 0.84 16 42 H 0.05 0.62 8.12 -51.93 -0.42 0.20 16 43 H 0.06 0.49 6.47 -51.93 -0.34 0.15 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 371.19 15.07 5.59 5.59 Total: -1.00 -28.81 371.19 -11.50 -40.31 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -6.37 Total: 9.08 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -5.81 Total: -19.96 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: 0.12 Total: -47.56 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.02 Total: 12.54 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.81 -11.50 -40.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339036943.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.634 kcal (2) G-P(sol) polarization free energy of solvation -28.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds