Wall clock time and date at job start Tue Mar 31 2020 14:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50700 * 119.99975 * 2 1 4 4 N 1.46502 * 109.47393 * 125.00085 * 3 2 1 5 5 C 1.36694 * 127.13380 * 265.56481 * 4 3 2 6 6 C 1.50696 * 126.34139 * 359.93687 * 5 4 3 7 7 C 1.53003 * 109.47242 * 90.00452 * 6 5 4 8 8 C 1.50698 * 109.47618 * 180.02562 * 7 6 5 9 9 H 1.08005 * 119.99528 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00128 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00212 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99775 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47177 * 359.97438 * 12 10 8 14 14 H 1.48491 * 109.47142 * 120.00046 * 12 10 8 15 15 H 1.48506 * 109.46680 * 239.99682 * 12 10 8 16 16 N 1.30308 * 107.31208 * 179.97438 * 5 4 3 17 17 N 1.28533 * 110.05609 * 359.76315 * 16 5 4 18 18 C 1.31226 * 109.84937 * 0.39157 * 17 16 5 19 19 N 1.38670 * 126.47085 * 179.88261 * 18 17 16 20 20 C 1.46500 * 119.99471 * 94.01550 * 19 18 17 21 21 C 1.39758 * 119.99845 * 274.01268 * 19 18 17 22 22 C 1.38939 * 120.07892 * 354.05447 * 21 19 18 23 23 C 1.38071 * 119.92560 * 179.97438 * 22 21 19 24 24 C 1.38314 * 120.07790 * 359.97438 * 23 22 21 25 25 C 1.38276 * 120.14782 * 0.02562 * 24 23 22 26 26 C 1.50695 * 119.95979 * 180.02562 * 25 24 23 27 27 C 1.38120 * 120.07281 * 359.97438 * 25 24 23 28 28 H 1.07999 * 120.00455 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.00075 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.00455 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47228 * 4.99871 * 3 2 1 32 32 H 1.09008 * 109.47050 * 244.99866 * 3 2 1 33 33 H 1.09001 * 109.47544 * 210.00213 * 6 5 4 34 34 H 1.08995 * 109.47534 * 330.00662 * 6 5 4 35 35 H 1.09001 * 109.46656 * 300.00305 * 7 6 5 36 36 H 1.08999 * 109.47159 * 59.99582 * 7 6 5 37 37 H 0.96996 * 119.99997 * 180.02562 * 11 10 8 38 38 H 1.08997 * 109.47125 * 274.08267 * 20 19 18 39 39 H 1.08997 * 109.47490 * 34.09065 * 20 19 18 40 40 H 1.09001 * 109.46631 * 154.08756 * 20 19 18 41 41 H 1.08001 * 120.03372 * 0.25082 * 22 21 19 42 42 H 1.08006 * 119.96173 * 180.02562 * 23 22 21 43 43 H 1.08001 * 119.92718 * 179.97438 * 24 23 22 44 44 H 1.09002 * 109.47035 * 90.00255 * 26 25 24 45 45 H 1.09005 * 109.46670 * 209.99749 * 26 25 24 46 46 H 1.08994 * 109.47174 * 329.99648 * 26 25 24 47 47 H 1.07999 * 120.03418 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.7727 1.8689 2.3689 6 6 1.5134 2.5541 2.8331 7 6 0.5668 1.5204 3.4466 8 6 -0.6929 2.2054 3.9103 9 1 -0.8067 3.2715 3.7808 10 6 -1.6995 1.4712 4.5008 11 7 -1.5606 0.1730 4.6590 12 14 -3.2606 2.3205 5.0763 13 1 -3.1692 3.7739 4.7859 14 1 -4.4289 1.7452 4.3628 15 1 -3.4244 2.1175 6.5382 16 7 3.8530 1.6793 3.0724 17 7 4.7331 1.0592 2.3703 18 6 4.2605 0.8255 1.1686 19 7 4.9212 0.1804 0.1341 20 6 4.7378 -1.2591 -0.0672 21 6 5.7620 0.9035 -0.7165 22 6 5.8421 2.2862 -0.6060 23 6 6.6741 2.9974 -1.4476 24 6 7.4278 2.3349 -2.3995 25 6 7.3505 0.9589 -2.5122 26 6 8.1740 0.2414 -3.5504 27 6 6.5202 0.2414 -1.6735 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1316 0.0895 32 1 2.6212 1.4026 -0.9314 33 1 1.7636 3.3065 3.5810 34 1 1.0264 3.0337 1.9840 35 1 0.3166 0.7679 2.6987 36 1 1.0537 1.0407 4.2957 37 1 -2.2689 -0.3435 5.0741 38 1 5.4387 -1.8063 0.5632 39 1 3.7176 -1.5361 0.1984 40 1 4.9207 -1.5059 -1.1130 41 1 5.2575 2.8036 0.1403 42 1 6.7371 4.0722 -1.3619 43 1 8.0775 2.8937 -3.0568 44 1 9.1398 -0.0301 -3.1241 45 1 7.6511 -0.6603 -3.8693 46 1 8.3267 0.8956 -4.4088 47 1 6.4606 -0.8334 -1.7618 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339570110.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:24 Heat of formation + Delta-G solvation = 128.730346 kcal Electronic energy + Delta-G solvation = -27575.194035 eV Core-core repulsion = 23952.953233 eV Total energy + Delta-G solvation = -3622.240802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.68546 -39.78194 -36.74419 -36.00680 -34.03523 -32.73780 -32.55784 -31.83514 -30.18492 -29.02785 -27.43708 -26.72424 -26.03078 -25.21204 -22.70246 -21.94778 -21.90467 -20.63383 -20.01725 -19.52610 -17.73768 -17.00515 -16.50648 -16.17368 -15.95631 -15.43894 -14.92263 -14.59177 -14.55335 -14.44153 -14.08930 -13.83879 -13.62639 -13.47226 -13.20552 -13.12536 -12.49336 -12.38192 -12.28078 -12.24696 -12.22754 -11.60630 -11.43558 -11.35173 -11.16489 -11.09293 -11.03133 -10.72035 -10.53782 -10.14913 -9.91882 -9.81952 -9.73632 -9.46094 -9.22055 -8.87077 -8.53507 -8.43361 -7.67335 -6.08136 -4.12021 1.27202 1.39984 1.91018 2.08218 2.44975 3.20899 3.25590 3.26121 3.34411 3.37586 3.70760 4.38353 4.58025 4.63882 4.70532 4.82646 4.86948 4.98330 4.99974 5.10424 5.16110 5.21979 5.26749 5.28164 5.35052 5.37790 5.43002 5.47526 5.58523 5.61093 5.66221 5.79901 5.94655 6.01339 6.09579 6.25841 6.29758 6.36998 6.40904 6.51460 6.59461 6.62630 6.69926 6.72061 6.93192 7.18092 7.51068 7.55234 7.67136 7.89500 8.26856 8.94149 9.12172 9.52549 11.02785 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.023331 B = 0.002825 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.823814 B = 9910.490251 C =10217.964799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.198 4.198 3 C 0.143 3.857 4 N -0.476 5.476 5 C 0.226 3.774 6 C -0.033 4.033 7 C 0.032 3.968 8 C -0.522 4.522 9 H 0.058 0.942 10 C 0.060 3.940 11 N -0.891 5.891 12 Si 0.892 3.108 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.283 1.283 16 N -0.298 5.298 17 N -0.279 5.279 18 C 0.373 3.627 19 N -0.539 5.539 20 C 0.097 3.903 21 C 0.219 3.781 22 C -0.178 4.178 23 C -0.071 4.071 24 C -0.170 4.170 25 C -0.047 4.047 26 C -0.113 4.113 27 C -0.183 4.183 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.020 0.980 36 H 0.024 0.976 37 H 0.261 0.739 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.115 0.885 42 H 0.122 0.878 43 H 0.118 0.882 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.359 -0.605 -19.148 23.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.217 4.217 3 C 0.020 3.980 4 N -0.171 5.171 5 C -0.041 4.041 6 C -0.073 4.073 7 C -0.007 4.007 8 C -0.561 4.561 9 H 0.077 0.923 10 C -0.141 4.141 11 N -0.529 5.529 12 Si 0.720 3.280 13 H -0.196 1.196 14 H -0.211 1.211 15 H -0.209 1.209 16 N -0.138 5.138 17 N -0.122 5.122 18 C 0.020 3.980 19 N -0.251 5.251 20 C -0.045 4.045 21 C 0.120 3.880 22 C -0.200 4.200 23 C -0.090 4.090 24 C -0.190 4.190 25 C -0.047 4.047 26 C -0.170 4.170 27 C -0.205 4.205 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.038 0.962 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.133 0.867 42 H 0.140 0.860 43 H 0.136 0.864 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 14.161 -0.849 -17.843 22.796 hybrid contribution -1.885 0.132 -0.575 1.975 sum 12.276 -0.718 -18.417 22.145 Atomic orbital electron populations 1.23981 0.95353 1.03002 0.94316 1.22840 0.96333 0.97157 1.05359 1.20861 0.91689 0.98172 0.87274 1.46937 1.13096 1.43896 1.13190 1.25574 0.99214 0.98263 0.81054 1.20497 0.87121 0.99179 1.00525 1.19089 0.92412 0.93007 0.96158 1.21157 1.00811 0.94424 1.39666 0.92333 1.24988 0.98606 0.94801 0.95750 1.69980 1.33479 1.05746 1.43731 0.86538 0.83137 0.79774 0.78579 1.19640 1.21059 1.20928 1.74228 0.98733 1.16385 1.24427 1.74547 1.23575 1.14442 0.99613 1.20366 0.83734 1.02859 0.91038 1.42264 1.46977 1.06920 1.28936 1.21856 1.02314 0.78157 1.02184 1.17774 0.89974 0.90822 0.89429 1.20694 1.04260 0.92166 1.02928 1.20870 0.94558 0.99536 0.94049 1.20825 1.02957 0.93785 1.01411 1.19624 0.95650 0.93665 0.95782 1.20786 0.99231 1.00082 0.96883 1.20484 1.01280 0.99661 0.99112 0.87582 0.87691 0.87382 0.87923 0.88965 0.89186 0.91309 0.96175 0.95782 0.92967 0.92093 0.91296 0.90167 0.86665 0.86044 0.86364 0.91078 0.91617 0.91515 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 13.98 29.02 0.41 -1.34 16 2 C -0.20 -2.67 9.85 -36.02 -0.35 -3.02 16 3 C 0.14 1.92 6.50 -5.19 -0.03 1.88 16 4 N -0.48 -7.99 2.79 -115.34 -0.32 -8.32 16 5 C 0.23 4.46 7.32 -154.05 -1.13 3.33 16 6 C -0.03 -0.67 5.52 -27.88 -0.15 -0.82 16 7 C 0.03 0.78 4.95 -27.88 -0.14 0.64 16 8 C -0.52 -13.94 9.11 -34.44 -0.31 -14.25 16 9 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 11 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 12 Si 0.89 20.87 29.54 -169.99 -5.02 15.84 16 13 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 N -0.30 -6.49 12.18 32.98 0.40 -6.09 16 17 N -0.28 -5.74 12.23 30.34 0.37 -5.36 16 18 C 0.37 6.42 5.95 -318.70 -1.90 4.52 16 19 N -0.54 -7.48 3.15 -122.19 -0.38 -7.87 16 20 C 0.10 1.04 10.14 59.85 0.61 1.65 16 21 C 0.22 2.86 6.51 -83.74 -0.55 2.32 16 22 C -0.18 -2.42 9.31 -39.38 -0.37 -2.78 16 23 C -0.07 -0.80 10.04 -39.61 -0.40 -1.20 16 24 C -0.17 -1.69 9.70 -39.54 -0.38 -2.08 16 25 C -0.05 -0.45 5.88 -104.65 -0.62 -1.07 16 26 C -0.11 -0.76 10.01 36.00 0.36 -0.40 16 27 C -0.18 -1.96 8.82 -39.38 -0.35 -2.31 16 28 H 0.11 1.42 7.84 -52.49 -0.41 1.01 16 29 H 0.10 1.34 8.06 -52.48 -0.42 0.92 16 30 H 0.11 1.41 6.44 -52.49 -0.34 1.07 16 31 H 0.10 1.30 6.78 -51.93 -0.35 0.95 16 32 H 0.09 1.08 8.14 -51.92 -0.42 0.66 16 33 H 0.09 1.80 8.14 -51.93 -0.42 1.37 16 34 H 0.07 1.22 7.19 -51.93 -0.37 0.85 16 35 H 0.02 0.51 7.80 -51.93 -0.41 0.11 16 36 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.76 6.46 -51.93 -0.34 0.42 16 40 H 0.08 0.63 6.24 -51.93 -0.32 0.31 16 41 H 0.12 1.78 7.01 -52.49 -0.37 1.42 16 42 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 46 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 47 H 0.13 1.09 6.23 -52.49 -0.33 0.77 16 LS Contribution 392.64 15.07 5.92 5.92 Total: -1.00 -32.53 392.64 -10.70 -43.22 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.00 Total: 1.18 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -5.40 Total: -13.36 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.80 Total: -52.80 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.53 -10.70 -43.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339570110.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.954 kcal (2) G-P(sol) polarization free energy of solvation -32.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds