Wall clock time and date at job start Tue Mar 31 2020 14:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50700 * 119.99975 * 2 1 4 4 N 1.46502 * 109.47393 * 125.00085 * 3 2 1 5 5 C 1.36694 * 127.13380 * 265.56481 * 4 3 2 6 6 C 1.50696 * 126.34139 * 359.93687 * 5 4 3 7 7 C 1.53003 * 109.47242 * 90.00452 * 6 5 4 8 8 C 1.50698 * 109.47618 * 180.02562 * 7 6 5 9 9 H 1.08005 * 119.99528 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00128 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00212 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99775 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47177 * 359.97438 * 12 10 8 14 14 H 1.48491 * 109.47142 * 120.00046 * 12 10 8 15 15 H 1.48506 * 109.46680 * 239.99682 * 12 10 8 16 16 N 1.30308 * 107.31208 * 179.97438 * 5 4 3 17 17 N 1.28533 * 110.05609 * 359.76315 * 16 5 4 18 18 C 1.31226 * 109.84937 * 0.39157 * 17 16 5 19 19 N 1.38670 * 126.47085 * 179.88261 * 18 17 16 20 20 C 1.46500 * 119.99471 * 94.01550 * 19 18 17 21 21 C 1.39758 * 119.99845 * 274.01268 * 19 18 17 22 22 C 1.38939 * 120.07892 * 354.05447 * 21 19 18 23 23 C 1.38071 * 119.92560 * 179.97438 * 22 21 19 24 24 C 1.38314 * 120.07790 * 359.97438 * 23 22 21 25 25 C 1.38276 * 120.14782 * 0.02562 * 24 23 22 26 26 C 1.50695 * 119.95979 * 180.02562 * 25 24 23 27 27 C 1.38120 * 120.07281 * 359.97438 * 25 24 23 28 28 H 1.07999 * 120.00455 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.00075 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.00455 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47228 * 4.99871 * 3 2 1 32 32 H 1.09008 * 109.47050 * 244.99866 * 3 2 1 33 33 H 1.09001 * 109.47544 * 210.00213 * 6 5 4 34 34 H 1.08995 * 109.47534 * 330.00662 * 6 5 4 35 35 H 1.09001 * 109.46656 * 300.00305 * 7 6 5 36 36 H 1.08999 * 109.47159 * 59.99582 * 7 6 5 37 37 H 0.96996 * 119.99997 * 180.02562 * 11 10 8 38 38 H 1.08997 * 109.47125 * 274.08267 * 20 19 18 39 39 H 1.08997 * 109.47490 * 34.09065 * 20 19 18 40 40 H 1.09001 * 109.46631 * 154.08756 * 20 19 18 41 41 H 1.08001 * 120.03372 * 0.25082 * 22 21 19 42 42 H 1.08006 * 119.96173 * 180.02562 * 23 22 21 43 43 H 1.08001 * 119.92718 * 179.97438 * 24 23 22 44 44 H 1.09002 * 109.47035 * 90.00255 * 26 25 24 45 45 H 1.09005 * 109.46670 * 209.99749 * 26 25 24 46 46 H 1.08994 * 109.47174 * 329.99648 * 26 25 24 47 47 H 1.07999 * 120.03418 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.7727 1.8689 2.3689 6 6 1.5134 2.5541 2.8331 7 6 0.5668 1.5204 3.4466 8 6 -0.6929 2.2054 3.9103 9 1 -0.8067 3.2715 3.7808 10 6 -1.6995 1.4712 4.5008 11 7 -1.5606 0.1730 4.6590 12 14 -3.2606 2.3205 5.0763 13 1 -3.1692 3.7739 4.7859 14 1 -4.4289 1.7452 4.3628 15 1 -3.4244 2.1175 6.5382 16 7 3.8530 1.6793 3.0724 17 7 4.7331 1.0592 2.3703 18 6 4.2605 0.8255 1.1686 19 7 4.9212 0.1804 0.1341 20 6 4.7378 -1.2591 -0.0672 21 6 5.7620 0.9035 -0.7165 22 6 5.8421 2.2862 -0.6060 23 6 6.6741 2.9974 -1.4476 24 6 7.4278 2.3349 -2.3995 25 6 7.3505 0.9589 -2.5122 26 6 8.1740 0.2414 -3.5504 27 6 6.5202 0.2414 -1.6735 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1316 0.0895 32 1 2.6212 1.4026 -0.9314 33 1 1.7636 3.3065 3.5810 34 1 1.0264 3.0337 1.9840 35 1 0.3166 0.7679 2.6987 36 1 1.0537 1.0407 4.2957 37 1 -2.2689 -0.3435 5.0741 38 1 5.4387 -1.8063 0.5632 39 1 3.7176 -1.5361 0.1984 40 1 4.9207 -1.5059 -1.1130 41 1 5.2575 2.8036 0.1403 42 1 6.7371 4.0722 -1.3619 43 1 8.0775 2.8937 -3.0568 44 1 9.1398 -0.0301 -3.1241 45 1 7.6511 -0.6603 -3.8693 46 1 8.3267 0.8956 -4.4088 47 1 6.4606 -0.8334 -1.7618 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339570110.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:24 Heat of formation + Delta-G solvation = 114.434337 kcal Electronic energy + Delta-G solvation = -27575.813956 eV Core-core repulsion = 23952.953233 eV Total energy + Delta-G solvation = -3622.860724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.11719 -40.68308 -37.76655 -37.26046 -35.87856 -33.96634 -33.52641 -33.49773 -31.29498 -30.33660 -28.50554 -27.79514 -27.21209 -26.75298 -23.82601 -23.80434 -22.73747 -21.83539 -21.44334 -20.68083 -18.86948 -18.46777 -18.09143 -17.44470 -16.99353 -16.59628 -16.39030 -16.05330 -15.60289 -15.46165 -15.08044 -15.01825 -14.84979 -14.68383 -14.37654 -14.24707 -14.02046 -13.61948 -13.23113 -13.13145 -13.02381 -12.91410 -12.88940 -12.75913 -12.53051 -12.47425 -12.36782 -12.07293 -11.89820 -11.80814 -11.65012 -11.27801 -11.17059 -10.93006 -10.62187 -10.49156 -10.09500 -9.68868 -8.64477 -8.18544 -6.29870 0.42210 0.48972 0.61659 0.83279 1.34217 1.42079 1.44456 1.56141 1.69132 2.10121 2.42605 2.85036 3.16118 3.41668 3.55827 3.72587 3.76783 3.88726 3.94969 4.05234 4.10681 4.21209 4.32944 4.39189 4.44858 4.47864 4.50318 4.62406 4.68071 4.71441 4.75946 4.80981 4.89437 4.91766 4.92552 4.93655 4.99585 5.22750 5.33090 5.47286 5.50989 5.51828 5.54281 5.61211 5.64758 5.72204 5.80745 5.88811 6.17943 6.23039 6.35286 6.85494 7.39620 7.63410 8.93343 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.023331 B = 0.002825 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.823814 B = 9910.490251 C =10217.964799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.200 4.200 3 C 0.139 3.861 4 N -0.470 5.470 5 C 0.212 3.788 6 C -0.019 4.019 7 C 0.045 3.955 8 C -0.534 4.534 9 H 0.070 0.930 10 C 0.005 3.995 11 N -0.931 5.931 12 Si 0.962 3.038 13 H -0.258 1.258 14 H -0.278 1.278 15 H -0.286 1.286 16 N -0.332 5.332 17 N -0.322 5.322 18 C 0.399 3.601 19 N -0.543 5.543 20 C 0.093 3.907 21 C 0.198 3.802 22 C -0.204 4.204 23 C -0.078 4.078 24 C -0.168 4.168 25 C -0.046 4.046 26 C -0.112 4.112 27 C -0.180 4.180 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.007 0.993 36 H -0.022 1.022 37 H 0.262 0.738 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.134 0.866 43 H 0.144 0.856 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.811 -0.322 -22.048 26.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.219 4.219 3 C 0.018 3.982 4 N -0.164 5.164 5 C -0.056 4.056 6 C -0.058 4.058 7 C 0.007 3.993 8 C -0.572 4.572 9 H 0.088 0.912 10 C -0.193 4.193 11 N -0.571 5.571 12 Si 0.787 3.213 13 H -0.181 1.181 14 H -0.203 1.203 15 H -0.212 1.212 16 N -0.172 5.172 17 N -0.165 5.165 18 C 0.043 3.957 19 N -0.257 5.257 20 C -0.048 4.048 21 C 0.100 3.900 22 C -0.226 4.226 23 C -0.096 4.096 24 C -0.187 4.187 25 C -0.046 4.046 26 C -0.168 4.168 27 C -0.202 4.202 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.025 0.975 36 H -0.003 1.003 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.133 0.867 41 H 0.104 0.896 42 H 0.152 0.848 43 H 0.162 0.838 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 14.628 -0.555 -20.777 25.416 hybrid contribution -1.894 0.011 0.212 1.906 sum 12.734 -0.545 -20.566 24.195 Atomic orbital electron populations 1.24099 0.95527 1.03388 0.94228 1.22886 0.96353 0.97318 1.05349 1.21131 0.91614 0.98567 0.86869 1.47074 1.13467 1.42874 1.12980 1.25335 0.98773 0.99220 0.82283 1.20227 0.86589 0.97764 1.01262 1.18831 0.92692 0.93551 0.94261 1.21570 1.01311 0.95069 1.39292 0.91191 1.25895 1.02167 0.95362 0.95872 1.70120 1.34711 1.07437 1.44812 0.85438 0.78892 0.79308 0.77649 1.18143 1.20318 1.21179 1.74099 0.99770 1.17425 1.25933 1.74440 1.24265 1.16335 1.01422 1.20569 0.83607 1.00591 0.90888 1.42543 1.47107 1.07851 1.28200 1.22060 1.02042 0.76303 1.04405 1.17987 0.90891 0.90759 0.90313 1.20639 1.05610 0.92792 1.03567 1.21079 0.94265 1.00323 0.93969 1.21181 1.02366 0.94311 1.00862 1.20065 0.95022 0.93787 0.95747 1.20856 0.99079 1.00551 0.96318 1.20764 1.00476 1.00805 0.98173 0.87473 0.87170 0.86974 0.87048 0.86889 0.89318 0.88597 0.97493 1.00328 0.92909 0.92062 0.91886 0.86703 0.89628 0.84822 0.83811 0.90190 0.90385 0.90128 0.83527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 13.98 67.79 0.95 -2.64 16 2 C -0.20 -5.29 9.85 25.66 0.25 -5.04 16 3 C 0.14 3.65 6.50 85.63 0.56 4.21 16 4 N -0.47 -16.02 2.79 -518.82 -1.45 -17.47 16 5 C 0.21 8.69 7.32 137.65 1.01 9.69 16 6 C -0.02 -0.77 5.52 29.85 0.16 -0.60 16 7 C 0.04 2.30 4.95 29.85 0.15 2.45 16 8 C -0.53 -28.71 9.11 25.60 0.23 -28.48 16 9 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 10 C 0.01 0.29 5.46 84.65 0.46 0.75 16 11 N -0.93 -55.25 13.29 21.45 0.28 -54.97 16 12 Si 0.96 42.70 29.54 68.60 2.03 44.72 16 13 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 14 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 15 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 16 N -0.33 -15.23 12.18 -49.56 -0.60 -15.84 16 17 N -0.32 -13.85 12.23 -57.93 -0.71 -14.56 16 18 C 0.40 14.02 5.95 260.05 1.55 15.56 16 19 N -0.54 -14.83 3.15 -540.51 -1.70 -16.53 16 20 C 0.09 1.87 10.14 127.77 1.30 3.17 16 21 C 0.20 5.00 6.51 38.20 0.25 5.24 16 22 C -0.20 -5.54 9.31 22.40 0.21 -5.33 16 23 C -0.08 -1.67 10.04 22.25 0.22 -1.44 16 24 C -0.17 -2.88 9.70 22.30 0.22 -2.67 16 25 C -0.05 -0.74 5.88 -19.88 -0.12 -0.85 16 26 C -0.11 -1.03 10.01 71.23 0.71 -0.32 16 27 C -0.18 -3.40 8.82 22.40 0.20 -3.21 16 28 H 0.11 2.81 7.84 -2.91 -0.02 2.79 16 29 H 0.11 2.79 8.06 -2.91 -0.02 2.77 16 30 H 0.11 2.86 6.44 -2.91 -0.02 2.84 16 31 H 0.11 2.72 6.78 -2.39 -0.02 2.70 16 32 H 0.11 2.50 8.14 -2.38 -0.02 2.48 16 33 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 34 H 0.10 3.35 7.19 -2.39 -0.02 3.33 16 35 H 0.01 0.36 7.80 -2.39 -0.02 0.34 16 36 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 37 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 1.34 6.46 -2.39 -0.02 1.32 16 40 H 0.11 1.47 6.24 -2.39 -0.01 1.46 16 41 H 0.09 2.79 7.01 -2.91 -0.02 2.77 16 42 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 43 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 44 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.08 0.56 8.08 -2.38 -0.02 0.55 16 46 H 0.08 0.56 8.08 -2.39 -0.02 0.54 16 47 H 0.15 2.04 6.23 -2.91 -0.02 2.02 16 Total: -1.00 -73.06 392.64 7.12 -65.95 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.96 Total: 18.20 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 8.31 Total: -9.50 kcal Atomic # 7 Polarization: -115.19 SS G_CDS: -4.18 Total: -119.37 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -73.06 7.12 -65.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339570110.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.381 kcal (2) G-P(sol) polarization free energy of solvation -73.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds