Wall clock time and date at job start Tue Mar 31 2020 14:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38292 * 119.92048 * 2 1 4 4 C 1.38261 * 119.83235 * 179.91148 * 3 2 1 5 5 C 1.37865 * 120.23386 * 359.51281 * 4 3 2 6 6 C 1.39636 * 120.27665 * 0.02562 * 5 4 3 7 7 C 1.38124 * 119.92366 * 179.15700 * 2 1 3 8 8 C 1.51208 * 130.99619 * 0.04549 * 7 2 1 9 9 C 1.53747 * 104.56122 * 179.97438 * 8 7 2 10 10 N 1.39665 * 129.33849 * 179.97438 * 6 5 4 11 11 C 1.38672 * 124.95837 * 359.97438 * 10 6 5 12 12 N 1.31218 * 126.47638 * 359.75051 * 11 10 6 13 13 N 1.28534 * 109.85439 * 179.70604 * 12 11 10 14 14 C 1.30319 * 110.04994 * 0.45032 * 13 12 11 15 15 C 1.50692 * 126.34202 * 179.81679 * 14 13 12 16 16 C 1.53005 * 109.47056 * 114.61746 * 15 14 13 17 17 C 1.52997 * 109.47389 * 354.61912 * 15 14 13 18 18 C 1.50695 * 109.47391 * 234.61745 * 15 14 13 19 19 H 1.08005 * 120.00217 * 241.11515 * 18 15 14 20 20 C 1.37871 * 120.00269 * 61.11953 * 18 15 14 21 21 N 1.31514 * 120.00348 * 190.68191 * 20 18 15 22 22 Si 1.86801 * 119.99888 * 10.95245 * 20 18 15 23 23 H 1.48506 * 109.46934 * 84.54383 * 22 20 18 24 24 H 1.48499 * 109.47509 * 204.54538 * 22 20 18 25 25 H 1.48497 * 109.47454 * 324.54839 * 22 20 18 26 26 N 1.36477 * 126.47200 * 179.72064 * 11 10 6 27 27 C 1.46500 * 127.13802 * 0.02920 * 26 11 10 28 28 H 1.08999 * 109.46935 * 270.84143 * 1 2 3 29 29 H 1.08998 * 109.46842 * 30.84714 * 1 2 3 30 30 H 1.09005 * 109.46832 * 150.84127 * 1 2 3 31 31 H 1.07999 * 120.08030 * 359.40316 * 3 2 1 32 32 H 1.08003 * 119.88376 * 179.48232 * 4 3 2 33 33 H 1.07996 * 119.86547 * 179.97438 * 5 4 3 34 34 H 1.09000 * 110.42408 * 61.18483 * 8 7 2 35 35 H 1.09010 * 110.41617 * 298.73104 * 8 7 2 36 36 H 1.09004 * 110.29630 * 241.06961 * 9 8 7 37 37 H 1.08995 * 110.30294 * 118.92591 * 9 8 7 38 38 H 1.08998 * 109.47476 * 175.59830 * 16 15 14 39 39 H 1.08994 * 109.46999 * 295.59958 * 16 15 14 40 40 H 1.08998 * 109.46848 * 55.60018 * 16 15 14 41 41 H 1.08998 * 109.47048 * 303.73197 * 17 15 14 42 42 H 1.09006 * 109.47194 * 63.73004 * 17 15 14 43 43 H 1.09001 * 109.47440 * 183.73273 * 17 15 14 44 44 H 0.97003 * 120.00116 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.46864 * 276.00766 * 27 26 11 46 46 H 1.08998 * 109.47531 * 36.00174 * 27 26 11 47 47 H 1.08993 * 109.47593 * 156.00986 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1968 1.1986 0.0000 4 6 3.5795 1.1965 0.0019 5 6 4.2718 0.0043 0.0138 6 6 3.5825 -1.2100 0.0236 7 6 2.1961 -1.1970 0.0176 8 6 1.7018 -2.6258 0.0377 9 6 2.9818 -3.4775 0.0501 10 7 4.0849 -2.5131 0.0358 11 6 5.4312 -2.8456 0.0400 12 7 6.4416 -2.0084 0.0288 13 7 7.5491 -2.6606 0.0435 14 6 7.3128 -3.9421 0.0551 15 6 8.3446 -5.0403 0.0700 16 6 8.2506 -5.8105 1.3887 17 6 9.7410 -4.4300 -0.0657 18 6 8.0936 -5.9811 -1.0802 19 1 7.8699 -7.0202 -0.8890 20 6 8.1497 -5.5153 -2.3766 21 7 7.7290 -6.2725 -3.3662 22 14 8.8302 -3.8116 -2.7284 23 1 10.3102 -3.8811 -2.8299 24 1 8.2693 -3.3090 -4.0082 25 1 8.4525 -2.8904 -1.6266 26 7 5.9556 -4.1055 0.0572 27 6 5.2172 -5.3707 0.0741 28 1 -0.3633 0.0151 1.0276 29 1 -0.3633 0.8823 -0.5269 30 1 -0.3633 -0.8975 -0.5007 31 1 1.6569 2.1339 -0.0097 32 1 4.1190 2.1320 -0.0066 33 1 5.3517 0.0096 0.0148 34 1 1.1128 -2.8372 -0.8547 35 1 1.1128 -2.8118 0.9359 36 1 3.0228 -4.1113 -0.8357 37 1 3.0225 -4.0859 0.9536 38 1 8.9425 -6.6525 1.3679 39 1 8.5087 -5.1486 2.2153 40 1 7.2336 -6.1793 1.5224 41 1 9.7873 -3.8268 -0.9723 42 1 9.9484 -3.8012 0.8002 43 1 10.4822 -5.2273 -0.1216 44 1 7.7681 -5.9446 -4.2783 45 1 4.9410 -5.6164 1.0996 46 1 4.3162 -5.2738 -0.5315 47 1 5.8450 -6.1633 -0.3328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339866613.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:06 Heat of formation + Delta-G solvation = 124.534048 kcal Electronic energy + Delta-G solvation = -28830.921451 eV Core-core repulsion = 25208.498683 eV Total energy + Delta-G solvation = -3622.422767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -43.91692 -41.52313 -38.10584 -37.63896 -35.60083 -34.39818 -33.99027 -32.23295 -30.35397 -29.50011 -28.43133 -28.17851 -27.35098 -27.19882 -24.09022 -23.92304 -23.40006 -22.08201 -21.01029 -20.68436 -18.99149 -18.08007 -17.91552 -17.10963 -17.08782 -16.82621 -16.40173 -16.28258 -15.53112 -15.48605 -15.01632 -14.57952 -14.36988 -14.26320 -14.21455 -14.08712 -13.78217 -13.70506 -13.61003 -13.14025 -13.01585 -12.90459 -12.86891 -12.77205 -12.60591 -12.38197 -12.25302 -12.13870 -12.08580 -11.70236 -11.65176 -11.54585 -11.07518 -10.89846 -10.74495 -10.63372 -9.68744 -9.48106 -8.45779 -8.22860 -6.46148 0.37544 0.45196 1.01215 1.19663 1.23059 1.34007 1.52592 2.06793 2.09826 2.35746 2.84989 2.89925 3.41413 3.50814 3.74967 3.84278 4.02434 4.05181 4.07948 4.13027 4.25365 4.31728 4.36651 4.43698 4.49889 4.56864 4.66557 4.71446 4.73007 4.74789 4.85326 4.88828 4.95249 4.98032 4.99784 5.03487 5.07756 5.11242 5.19430 5.30914 5.40131 5.42353 5.51870 5.57464 5.60882 5.71217 5.79844 5.89597 6.16903 6.24032 6.44315 6.62353 7.23229 7.94165 8.65223 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.018282 B = 0.004080 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.197273 B = 6861.035567 C = 7149.229741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.042 4.042 3 C -0.156 4.156 4 C -0.088 4.088 5 C -0.182 4.182 6 C 0.157 3.843 7 C -0.157 4.157 8 C -0.068 4.068 9 C 0.102 3.898 10 N -0.533 5.533 11 C 0.410 3.590 12 N -0.371 5.371 13 N -0.324 5.324 14 C 0.217 3.783 15 C 0.110 3.890 16 C -0.116 4.116 17 C -0.134 4.134 18 C -0.495 4.495 19 H 0.072 0.928 20 C 0.059 3.941 21 N -0.920 5.920 22 Si 0.841 3.159 23 H -0.277 1.277 24 H -0.339 1.339 25 H -0.173 1.173 26 N -0.480 5.480 27 C 0.065 3.935 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.152 0.848 32 H 0.139 0.861 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.026 0.974 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.261 0.739 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.640 6.990 10.475 21.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.042 4.042 3 C -0.176 4.176 4 C -0.107 4.107 5 C -0.205 4.205 6 C 0.060 3.940 7 C -0.161 4.161 8 C -0.104 4.104 9 C -0.019 4.019 10 N -0.244 5.244 11 C 0.054 3.946 12 N -0.217 5.217 13 N -0.161 5.161 14 C -0.052 4.052 15 C 0.106 3.894 16 C -0.174 4.174 17 C -0.192 4.192 18 C -0.533 4.533 19 H 0.090 0.910 20 C -0.142 4.142 21 N -0.559 5.559 22 Si 0.673 3.327 23 H -0.204 1.204 24 H -0.270 1.270 25 H -0.096 1.096 26 N -0.176 5.176 27 C -0.077 4.077 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.170 0.830 32 H 0.157 0.843 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.118 0.882 46 H 0.110 0.890 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.849 8.085 10.304 21.341 hybrid contribution 0.579 -0.535 -1.274 1.498 sum -16.270 7.550 9.030 20.081 Atomic orbital electron populations 1.20819 0.88291 1.03919 1.03447 1.19536 0.97524 0.90300 0.96872 1.21201 0.93404 0.98477 1.04497 1.21058 0.95136 0.96688 0.97786 1.20926 1.00534 0.91434 1.07565 1.18440 0.93395 0.83720 0.98450 1.19986 0.90710 0.96563 1.08872 1.21103 0.95378 0.88113 1.05838 1.22588 0.84032 0.91890 1.03376 1.43047 0.98721 1.06230 1.76440 1.20769 0.87290 0.82905 1.03612 1.74283 0.93837 1.25660 1.27887 1.73959 1.18161 1.02892 1.21092 1.25662 0.83076 0.95332 1.01091 1.17247 0.87594 0.87844 0.96692 1.21663 1.02139 0.99666 0.93896 1.22035 0.97001 1.00059 1.00064 1.20948 1.47714 0.96069 0.88610 0.90962 1.25277 0.94238 0.97929 0.96755 1.69967 1.46960 1.38774 1.00151 0.87872 0.79274 0.87352 0.78176 1.20421 1.27020 1.09604 1.45893 1.07153 1.06645 1.57869 1.22578 0.97682 0.83080 1.04334 0.89740 0.90175 0.90576 0.82995 0.84325 0.87257 0.87268 0.86417 0.90219 0.88668 0.90785 0.93000 0.92651 0.95595 0.92178 0.90985 0.92979 0.88234 0.89000 0.87930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 9.88 71.24 0.70 -0.54 16 2 C -0.04 -0.83 5.88 -19.88 -0.12 -0.95 16 3 C -0.16 -3.23 9.71 22.29 0.22 -3.01 16 4 C -0.09 -2.29 10.02 22.19 0.22 -2.07 16 5 C -0.18 -6.21 9.62 22.52 0.22 -5.99 16 6 C 0.16 5.12 6.65 38.33 0.25 5.37 16 7 C -0.16 -3.76 6.07 -19.63 -0.12 -3.88 16 8 C -0.07 -1.14 6.33 30.26 0.19 -0.95 16 9 C 0.10 2.31 5.64 86.62 0.49 2.80 16 10 N -0.53 -18.06 3.24 -515.38 -1.67 -19.73 16 11 C 0.41 17.12 8.56 260.05 2.23 19.35 16 12 N -0.37 -17.72 10.19 -57.93 -0.59 -18.31 16 13 N -0.32 -15.90 9.03 -49.56 -0.45 -16.35 16 14 C 0.22 9.81 4.50 137.64 0.62 10.43 16 15 C 0.11 4.72 0.54 -53.68 -0.03 4.69 16 16 C -0.12 -3.97 8.37 71.98 0.60 -3.37 16 17 C -0.13 -5.71 7.33 71.98 0.53 -5.18 16 18 C -0.50 -24.76 6.50 25.60 0.17 -24.59 16 19 H 0.07 3.77 7.95 -2.91 -0.02 3.75 16 20 C 0.06 3.31 5.38 84.65 0.46 3.76 16 21 N -0.92 -54.64 13.96 21.44 0.30 -54.34 16 22 Si 0.84 45.17 23.48 68.60 1.61 46.78 16 23 H -0.28 -14.56 7.06 99.48 0.70 -13.86 16 24 H -0.34 -19.70 7.11 99.48 0.71 -18.99 16 25 H -0.17 -9.18 3.25 99.48 0.32 -8.86 16 26 N -0.48 -19.39 3.21 -538.10 -1.73 -21.11 16 27 C 0.06 2.02 8.66 127.77 1.11 3.13 16 28 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 30 H 0.08 0.73 7.70 -2.38 -0.02 0.72 16 31 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 32 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 33 H 0.11 4.40 6.42 -2.91 -0.02 4.38 16 34 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.12 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.08 1.76 6.63 -2.38 -0.02 1.75 16 37 H 0.10 1.76 7.77 -2.39 -0.02 1.74 16 38 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.05 1.75 6.79 -2.39 -0.02 1.73 16 41 H 0.03 1.22 2.56 -2.39 -0.01 1.21 16 42 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 43 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 44 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 45 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 46 H 0.09 2.49 5.39 -2.39 -0.01 2.48 16 47 H 0.10 3.75 5.80 -2.39 -0.01 3.74 16 Total: -1.00 -74.88 354.84 5.81 -69.07 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.60 Total: 14.98 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 7.73 Total: -0.99 kcal Atomic # 7 Polarization: -125.71 SS G_CDS: -4.14 Total: -129.85 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.61 Total: 46.78 kcal Total: -74.88 5.81 -69.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339866613.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.609 kcal (2) G-P(sol) polarization free energy of solvation -74.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.80 seconds