Wall clock time and date at job start Tue Mar 31 2020 14:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38262 * 120.09026 * 2 1 4 4 C 1.37609 * 119.83661 * 179.97438 * 3 2 1 5 5 C 1.38731 * 120.47673 * 0.22111 * 4 3 2 6 6 C 1.37698 * 119.75746 * 359.71917 * 5 4 3 7 7 C 1.38038 * 120.08187 * 180.02562 * 2 1 3 8 8 C 1.50717 * 121.76162 * 180.32541 * 6 5 4 9 9 C 1.52901 * 109.86979 * 343.02175 * 8 6 5 10 10 N 1.47164 * 108.48929 * 50.46119 * 9 8 6 11 11 C 1.38577 * 110.99983 * 165.29008 * 10 9 8 12 12 N 1.31214 * 126.47626 * 36.13161 * 11 10 9 13 13 N 1.28532 * 109.86383 * 179.82625 * 12 11 10 14 14 C 1.30291 * 110.04956 * 0.46142 * 13 12 11 15 15 C 1.50704 * 126.34563 * 179.76205 * 14 13 12 16 16 C 1.53000 * 109.47161 * 269.95439 * 15 14 13 17 17 C 1.50691 * 109.47013 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00407 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99786 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00399 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 120.00069 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46904 * 59.99698 * 21 19 17 23 23 H 1.48491 * 109.47170 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46859 * 300.00255 * 21 19 17 25 25 N 1.36453 * 126.47100 * 216.45570 * 11 10 9 26 26 C 1.46498 * 127.13890 * 0.02562 * 25 11 10 27 27 C 1.46629 * 110.25720 * 288.70610 * 10 9 8 28 28 H 1.09006 * 109.46960 * 269.97631 * 1 2 3 29 29 H 1.08999 * 109.47605 * 29.96987 * 1 2 3 30 30 H 1.08997 * 109.47442 * 149.97697 * 1 2 3 31 31 H 1.08004 * 120.05781 * 0.09335 * 3 2 1 32 32 H 1.08007 * 119.71138 * 179.97438 * 4 3 2 33 33 H 1.07999 * 119.83314 * 359.95890 * 7 2 1 34 34 H 1.08998 * 109.38916 * 222.92720 * 8 6 5 35 35 H 1.08991 * 109.39199 * 103.11870 * 8 6 5 36 36 H 1.08994 * 109.63444 * 170.16521 * 9 8 6 37 37 H 1.09007 * 109.63501 * 290.56405 * 9 8 6 38 38 H 1.09005 * 109.47013 * 29.95526 * 15 14 13 39 39 H 1.09000 * 109.47093 * 149.95354 * 15 14 13 40 40 H 1.08997 * 109.46653 * 300.00163 * 16 15 14 41 41 H 1.09000 * 109.47186 * 59.99972 * 16 15 14 42 42 H 0.96998 * 120.00859 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.47158 * 95.80018 * 26 25 11 44 44 H 1.08997 * 109.47426 * 215.79756 * 26 25 11 45 45 H 1.08998 * 109.47202 * 335.80385 * 26 25 11 46 46 H 1.09003 * 109.27160 * 172.72862 * 27 10 9 47 47 H 1.08996 * 109.27617 * 292.23727 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2002 1.1963 0.0000 4 6 3.5763 1.1902 0.0005 5 6 4.2746 -0.0085 -0.0035 6 6 3.5857 -1.2008 -0.0023 7 6 2.1989 -1.1945 -0.0005 8 6 4.2984 -2.5288 0.0007 9 6 5.7564 -2.3371 -0.4179 10 7 6.3367 -1.2556 0.3940 11 6 7.7194 -1.2523 0.3015 12 7 8.4306 -1.5362 -0.7641 13 7 9.6828 -1.4303 -0.4943 14 6 9.8437 -1.0850 0.7517 15 6 11.1583 -0.8640 1.4547 16 6 11.6322 -2.1798 2.0752 17 6 12.9464 -1.9587 2.7787 18 1 13.3986 -0.9780 2.7825 19 6 13.5720 -3.0088 3.4166 20 7 13.0217 -4.2032 3.4116 21 14 15.2015 -2.7350 4.2881 22 1 15.0266 -1.7188 5.3568 23 1 15.6614 -4.0120 4.8904 24 1 16.2114 -2.2562 3.3104 25 7 8.5986 -0.9593 1.3030 26 6 8.2758 -0.5878 2.6828 27 6 5.7800 0.0387 -0.0121 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5133 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6626 2.1330 0.0015 32 1 4.1157 2.1259 0.0001 33 1 1.6575 -2.1289 -0.0003 34 1 3.8069 -3.2048 -0.6990 35 1 4.2628 -2.9564 1.0026 36 1 6.3106 -3.2602 -0.2483 37 1 5.8023 -2.0713 -1.4741 38 1 11.8997 -0.5130 0.7369 39 1 11.0300 -0.1179 2.2389 40 1 10.8908 -2.5308 2.7929 41 1 11.7605 -2.9259 1.2910 42 1 13.4616 -4.9419 3.8607 43 1 8.3177 -1.4735 3.3168 44 1 8.9963 0.1484 3.0390 45 1 7.2730 -0.1621 2.7193 46 1 6.1197 0.8094 0.6799 47 1 6.1262 0.2799 -1.0171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340019873.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:53 Heat of formation + Delta-G solvation = 97.051434 kcal Electronic energy + Delta-G solvation = -26906.347226 eV Core-core repulsion = 23282.732724 eV Total energy + Delta-G solvation = -3623.614503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.63387 -40.42571 -37.73441 -34.82779 -34.09813 -33.26810 -33.11106 -31.62044 -29.62698 -29.09278 -27.68371 -27.07360 -25.27951 -24.26305 -23.67953 -22.51484 -21.87787 -20.90476 -20.01133 -19.22610 -17.31569 -16.81166 -16.41701 -16.16843 -15.59471 -15.41027 -15.22723 -14.83424 -14.67166 -14.50485 -14.02623 -13.65023 -13.45538 -13.27168 -13.15005 -13.05459 -12.73838 -12.70861 -12.52490 -12.35832 -12.25896 -12.04342 -11.48774 -11.35122 -11.14127 -11.13133 -10.98252 -10.86527 -10.73621 -10.42317 -10.01841 -9.87643 -9.72221 -9.25386 -9.16542 -8.93653 -8.65477 -8.41534 -8.25001 -6.05746 -4.10184 1.04874 1.13512 2.05840 2.47777 3.22232 3.30520 3.35608 3.37646 3.42966 3.70475 4.33675 4.40103 4.40583 4.60298 4.64514 4.85872 4.86755 4.89867 5.01005 5.08293 5.13317 5.18773 5.21257 5.25203 5.30081 5.30286 5.33773 5.42604 5.48107 5.52940 5.55256 5.63563 5.73605 5.80084 5.80574 5.96147 6.14268 6.20560 6.32624 6.32954 6.39468 6.43998 6.57393 6.66360 6.74333 6.92878 7.42124 7.54769 7.68087 7.91258 8.28606 8.95653 9.13565 9.54343 11.05280 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.029466 B = 0.002207 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.017734 B =12684.117255 C =12725.217690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.087 4.087 3 C -0.123 4.123 4 C -0.109 4.109 5 C -0.081 4.081 6 C -0.061 4.061 7 C -0.120 4.120 8 C -0.077 4.077 9 C 0.070 3.930 10 N -0.451 5.451 11 C 0.318 3.682 12 N -0.313 5.313 13 N -0.297 5.297 14 C 0.217 3.783 15 C -0.031 4.031 16 C 0.032 3.968 17 C -0.525 4.525 18 H 0.058 0.942 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.895 3.105 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.275 1.275 25 N -0.469 5.469 26 C 0.083 3.917 27 C 0.103 3.897 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.014 0.986 41 H 0.025 0.975 42 H 0.262 0.738 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.349 9.722 -4.310 27.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.087 4.087 3 C -0.141 4.141 4 C -0.127 4.127 5 C -0.081 4.081 6 C -0.061 4.061 7 C -0.138 4.138 8 C -0.115 4.115 9 C -0.057 4.057 10 N -0.176 5.176 11 C -0.038 4.038 12 N -0.158 5.158 13 N -0.137 5.137 14 C -0.050 4.050 15 C -0.071 4.071 16 C -0.006 4.006 17 C -0.563 4.563 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.530 5.530 21 Si 0.723 3.277 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.201 1.201 25 N -0.161 5.161 26 C -0.061 4.061 27 C -0.025 4.025 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.033 0.967 41 H 0.044 0.956 42 H 0.072 0.928 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.105 0.895 46 H 0.105 0.895 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -25.130 9.072 -5.151 27.209 hybrid contribution 0.688 0.521 1.236 1.508 sum -24.442 9.593 -3.915 26.548 Atomic orbital electron populations 1.20780 0.91221 1.02710 1.02305 1.19867 0.96017 0.93193 0.99669 1.20811 0.93938 0.97578 1.01745 1.20868 0.94324 0.97196 1.00327 1.19388 0.94039 0.93102 1.01617 1.19526 0.93317 0.94562 0.98710 1.20966 0.93271 0.97701 1.01832 1.20627 0.93627 0.94091 1.03130 1.22107 0.94259 0.93717 0.95648 1.58862 0.97956 1.05344 1.55429 1.22119 0.89468 1.06216 0.85983 1.74499 0.98739 1.20753 1.21760 1.74042 1.08729 1.18855 1.12035 1.25650 0.87841 1.00167 0.91348 1.20470 0.86161 1.02514 0.97992 1.19060 0.96021 0.89899 0.95619 1.21092 1.05583 0.95724 1.33919 0.92333 1.25018 0.97796 0.95111 0.96359 1.69956 1.39174 1.00491 1.43423 0.86607 0.83881 0.77372 0.79843 1.20214 1.21287 1.20079 1.46157 1.06450 1.52141 1.11397 1.21992 1.02683 1.02583 0.78806 1.20990 0.90827 0.90087 1.00547 0.91198 0.91612 0.91570 0.86071 0.86039 0.86015 0.89579 0.89464 0.89398 0.92254 0.89242 0.91154 0.96716 0.95623 0.92788 0.89786 0.89307 0.89452 0.89490 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.02 36.01 0.36 -0.28 16 2 C -0.09 -0.72 5.88 -104.69 -0.62 -1.33 16 3 C -0.12 -1.02 9.69 -39.80 -0.39 -1.40 16 4 C -0.11 -0.99 9.63 -39.63 -0.38 -1.37 16 5 C -0.08 -0.85 5.79 -104.67 -0.61 -1.45 16 6 C -0.06 -0.61 5.77 -104.65 -0.60 -1.21 16 7 C -0.12 -1.05 9.31 -39.49 -0.37 -1.42 16 8 C -0.08 -0.73 5.95 -27.93 -0.17 -0.90 16 9 C 0.07 0.85 5.17 -3.73 -0.02 0.83 16 10 N -0.45 -6.08 4.66 -175.99 -0.82 -6.90 16 11 C 0.32 5.39 6.65 -318.88 -2.12 3.27 16 12 N -0.31 -6.24 11.75 30.31 0.36 -5.88 16 13 N -0.30 -6.47 12.18 32.99 0.40 -6.07 16 14 C 0.22 4.33 7.32 -154.01 -1.13 3.20 16 15 C -0.03 -0.64 5.53 -27.88 -0.15 -0.79 16 16 C 0.03 0.82 4.95 -27.89 -0.14 0.68 16 17 C -0.52 -14.30 9.11 -34.44 -0.31 -14.62 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 21 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 N -0.47 -7.96 3.21 -121.46 -0.39 -8.35 16 26 C 0.08 1.06 11.00 59.85 0.66 1.72 16 27 C 0.10 1.19 5.18 -5.16 -0.03 1.16 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 30 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 31 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 32 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 33 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 1.17 8.00 -51.93 -0.42 0.75 16 37 H 0.06 0.75 8.05 -51.92 -0.42 0.33 16 38 H 0.09 1.80 8.14 -51.93 -0.42 1.37 16 39 H 0.07 1.26 7.40 -51.93 -0.38 0.87 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.09 1.02 7.44 -51.93 -0.39 0.63 16 45 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 46 H 0.09 0.94 8.13 -51.93 -0.42 0.52 16 47 H 0.06 0.77 8.11 -51.93 -0.42 0.35 16 LS Contribution 386.97 15.07 5.83 5.83 Total: -1.00 -33.16 386.97 -12.49 -45.65 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -7.48 Total: -2.31 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -6.10 Total: -12.36 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.28 Total: -52.95 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.16 -12.49 -45.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340019873.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.703 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds