Wall clock time and date at job start Tue Mar 31 2020 14:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38262 * 120.09026 * 2 1 4 4 C 1.37609 * 119.83661 * 179.97438 * 3 2 1 5 5 C 1.38731 * 120.47673 * 0.22111 * 4 3 2 6 6 C 1.37698 * 119.75746 * 359.71917 * 5 4 3 7 7 C 1.38038 * 120.08187 * 180.02562 * 2 1 3 8 8 C 1.50717 * 121.76162 * 180.32541 * 6 5 4 9 9 C 1.52901 * 109.86979 * 343.02175 * 8 6 5 10 10 N 1.47164 * 108.48929 * 50.46119 * 9 8 6 11 11 C 1.38577 * 110.99983 * 165.29008 * 10 9 8 12 12 N 1.31214 * 126.47626 * 36.13161 * 11 10 9 13 13 N 1.28532 * 109.86383 * 179.82625 * 12 11 10 14 14 C 1.30291 * 110.04956 * 0.46142 * 13 12 11 15 15 C 1.50704 * 126.34563 * 179.76205 * 14 13 12 16 16 C 1.53000 * 109.47161 * 269.95439 * 15 14 13 17 17 C 1.50691 * 109.47013 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00407 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99786 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00399 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 120.00069 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46904 * 59.99698 * 21 19 17 23 23 H 1.48491 * 109.47170 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46859 * 300.00255 * 21 19 17 25 25 N 1.36453 * 126.47100 * 216.45570 * 11 10 9 26 26 C 1.46498 * 127.13890 * 0.02562 * 25 11 10 27 27 C 1.46629 * 110.25720 * 288.70610 * 10 9 8 28 28 H 1.09006 * 109.46960 * 269.97631 * 1 2 3 29 29 H 1.08999 * 109.47605 * 29.96987 * 1 2 3 30 30 H 1.08997 * 109.47442 * 149.97697 * 1 2 3 31 31 H 1.08004 * 120.05781 * 0.09335 * 3 2 1 32 32 H 1.08007 * 119.71138 * 179.97438 * 4 3 2 33 33 H 1.07999 * 119.83314 * 359.95890 * 7 2 1 34 34 H 1.08998 * 109.38916 * 222.92720 * 8 6 5 35 35 H 1.08991 * 109.39199 * 103.11870 * 8 6 5 36 36 H 1.08994 * 109.63444 * 170.16521 * 9 8 6 37 37 H 1.09007 * 109.63501 * 290.56405 * 9 8 6 38 38 H 1.09005 * 109.47013 * 29.95526 * 15 14 13 39 39 H 1.09000 * 109.47093 * 149.95354 * 15 14 13 40 40 H 1.08997 * 109.46653 * 300.00163 * 16 15 14 41 41 H 1.09000 * 109.47186 * 59.99972 * 16 15 14 42 42 H 0.96998 * 120.00859 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.47158 * 95.80018 * 26 25 11 44 44 H 1.08997 * 109.47426 * 215.79756 * 26 25 11 45 45 H 1.08998 * 109.47202 * 335.80385 * 26 25 11 46 46 H 1.09003 * 109.27160 * 172.72862 * 27 10 9 47 47 H 1.08996 * 109.27617 * 292.23727 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2002 1.1963 0.0000 4 6 3.5763 1.1902 0.0005 5 6 4.2746 -0.0085 -0.0035 6 6 3.5857 -1.2008 -0.0023 7 6 2.1989 -1.1945 -0.0005 8 6 4.2984 -2.5288 0.0007 9 6 5.7564 -2.3371 -0.4179 10 7 6.3367 -1.2556 0.3940 11 6 7.7194 -1.2523 0.3015 12 7 8.4306 -1.5362 -0.7641 13 7 9.6828 -1.4303 -0.4943 14 6 9.8437 -1.0850 0.7517 15 6 11.1583 -0.8640 1.4547 16 6 11.6322 -2.1798 2.0752 17 6 12.9464 -1.9587 2.7787 18 1 13.3986 -0.9780 2.7825 19 6 13.5720 -3.0088 3.4166 20 7 13.0217 -4.2032 3.4116 21 14 15.2015 -2.7350 4.2881 22 1 15.0266 -1.7188 5.3568 23 1 15.6614 -4.0120 4.8904 24 1 16.2114 -2.2562 3.3104 25 7 8.5986 -0.9593 1.3030 26 6 8.2758 -0.5878 2.6828 27 6 5.7800 0.0387 -0.0121 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5133 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6626 2.1330 0.0015 32 1 4.1157 2.1259 0.0001 33 1 1.6575 -2.1289 -0.0003 34 1 3.8069 -3.2048 -0.6990 35 1 4.2628 -2.9564 1.0026 36 1 6.3106 -3.2602 -0.2483 37 1 5.8023 -2.0713 -1.4741 38 1 11.8997 -0.5130 0.7369 39 1 11.0300 -0.1179 2.2389 40 1 10.8908 -2.5308 2.7929 41 1 11.7605 -2.9259 1.2910 42 1 13.4616 -4.9419 3.8607 43 1 8.3177 -1.4735 3.3168 44 1 8.9963 0.1484 3.0390 45 1 7.2730 -0.1621 2.7193 46 1 6.1197 0.8094 0.6799 47 1 6.1262 0.2799 -1.0171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340019873.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:52 Heat of formation + Delta-G solvation = 81.085688 kcal Electronic energy + Delta-G solvation = -26907.039553 eV Core-core repulsion = 23282.732724 eV Total energy + Delta-G solvation = -3624.306830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.07128 -41.21108 -38.65509 -36.38876 -35.69179 -34.41391 -33.82668 -33.33500 -30.45254 -30.39563 -28.85651 -28.12683 -27.09313 -25.11405 -24.62085 -23.74238 -23.22546 -22.05513 -21.54468 -20.10128 -18.67813 -18.33200 -17.79667 -17.35673 -16.73475 -16.46100 -16.34703 -16.08934 -15.64502 -15.52796 -15.16307 -14.91064 -14.55602 -14.42410 -14.31782 -14.07207 -13.88769 -13.71153 -13.51048 -13.37465 -13.13781 -13.09049 -12.82995 -12.73784 -12.69607 -12.52583 -12.16463 -12.07226 -11.88074 -11.80003 -11.63678 -11.58604 -11.32273 -11.12782 -10.56227 -10.43364 -9.77048 -9.60483 -9.30763 -8.19813 -6.32341 0.36303 0.47570 0.65799 1.19930 1.43858 1.47161 1.54655 1.70099 2.42366 2.55602 2.77331 3.14387 3.41813 3.54150 3.65099 3.78159 3.89573 3.99019 4.00565 4.10561 4.16495 4.18792 4.23615 4.30905 4.39048 4.50320 4.56163 4.58920 4.62800 4.66651 4.70706 4.79187 4.86034 4.87321 4.90012 4.94056 5.02535 5.03618 5.20930 5.28486 5.41502 5.44118 5.46317 5.56609 5.59496 5.70835 5.71496 5.78536 6.08399 6.14504 6.17601 6.83572 7.37681 7.64321 8.92093 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.029466 B = 0.002207 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.017734 B =12684.117255 C =12725.217690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.128 4.128 4 C -0.114 4.114 5 C -0.100 4.100 6 C -0.074 4.074 7 C -0.126 4.126 8 C -0.068 4.068 9 C 0.069 3.931 10 N -0.446 5.446 11 C 0.337 3.663 12 N -0.346 5.346 13 N -0.333 5.333 14 C 0.203 3.797 15 C -0.015 4.015 16 C 0.043 3.957 17 C -0.539 4.539 18 H 0.074 0.926 19 C -0.001 4.001 20 N -0.935 5.935 21 Si 0.969 3.031 22 H -0.260 1.260 23 H -0.288 1.288 24 H -0.268 1.268 25 N -0.466 5.466 26 C 0.075 3.925 27 C 0.108 3.892 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.142 0.858 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.090 0.910 39 H 0.100 0.900 40 H -0.006 1.006 41 H -0.018 1.018 42 H 0.263 0.737 43 H 0.079 0.921 44 H 0.107 0.893 45 H 0.114 0.886 46 H 0.096 0.904 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.043 11.580 -3.145 29.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 C -0.145 4.145 4 C -0.132 4.132 5 C -0.100 4.100 6 C -0.075 4.075 7 C -0.144 4.144 8 C -0.105 4.105 9 C -0.058 4.058 10 N -0.172 5.172 11 C -0.021 4.021 12 N -0.191 5.191 13 N -0.172 5.172 14 C -0.066 4.066 15 C -0.055 4.055 16 C 0.005 3.995 17 C -0.577 4.577 18 H 0.092 0.908 19 C -0.199 4.199 20 N -0.575 5.575 21 Si 0.793 3.207 22 H -0.185 1.185 23 H -0.214 1.214 24 H -0.193 1.193 25 N -0.159 5.159 26 C -0.066 4.066 27 C -0.019 4.019 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.160 0.840 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.125 0.875 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.118 0.882 40 H 0.013 0.987 41 H 0.000 1.000 42 H 0.072 0.928 43 H 0.098 0.902 44 H 0.125 0.875 45 H 0.132 0.868 46 H 0.114 0.886 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -26.842 10.956 -3.981 29.264 hybrid contribution 1.051 -0.061 0.848 1.352 sum -25.791 10.895 -3.134 28.172 Atomic orbital electron populations 1.20829 0.89359 1.03656 1.03064 1.20238 0.97481 0.92945 0.98363 1.21121 0.93717 0.98669 1.01040 1.21061 0.94953 0.97205 0.99991 1.19365 0.93039 0.94086 1.03534 1.19642 0.94113 0.94345 0.99365 1.21184 0.92770 0.98871 1.01598 1.20585 0.91438 0.94672 1.03770 1.22155 0.95949 0.92555 0.95179 1.59139 0.95754 1.06744 1.55532 1.22508 0.90763 1.03506 0.85278 1.74414 0.98424 1.22787 1.23429 1.73932 1.10015 1.19824 1.13473 1.25428 0.88718 1.01145 0.91272 1.20184 0.86479 1.00263 0.98546 1.18828 0.95445 0.91420 0.93857 1.21562 1.06176 0.96421 1.33500 0.90775 1.26022 1.01867 0.94735 0.97266 1.70115 1.41128 1.01578 1.44674 0.85436 0.78869 0.77465 0.78888 1.18473 1.21410 1.19252 1.46333 1.05423 1.51424 1.12689 1.22320 1.04815 1.02971 0.76474 1.20978 0.91962 0.88990 0.99943 0.90406 0.90598 0.90788 0.83996 0.84768 0.84330 0.87490 0.89167 0.91030 0.93082 0.89159 0.88160 0.98734 1.00004 0.92816 0.90240 0.87498 0.86789 0.88605 0.93394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.02 71.24 0.71 -0.23 16 2 C -0.09 -1.25 5.88 -19.91 -0.12 -1.37 16 3 C -0.13 -1.80 9.69 22.13 0.21 -1.58 16 4 C -0.11 -1.87 9.63 22.24 0.21 -1.65 16 5 C -0.10 -1.97 5.79 -19.90 -0.12 -2.09 16 6 C -0.07 -1.39 5.77 -19.88 -0.11 -1.50 16 7 C -0.13 -1.94 9.31 22.33 0.21 -1.73 16 8 C -0.07 -1.21 5.95 29.82 0.18 -1.03 16 9 C 0.07 1.70 5.17 86.22 0.45 2.14 16 10 N -0.45 -11.97 4.66 -710.72 -3.31 -15.28 16 11 C 0.34 11.57 6.65 260.12 1.73 13.30 16 12 N -0.35 -14.32 11.75 -58.01 -0.68 -15.00 16 13 N -0.33 -15.06 12.18 -49.53 -0.60 -15.66 16 14 C 0.20 8.26 7.32 137.64 1.01 9.27 16 15 C -0.02 -0.61 5.53 29.85 0.16 -0.45 16 16 C 0.04 2.24 4.95 29.85 0.15 2.39 16 17 C -0.54 -29.45 9.11 25.60 0.23 -29.21 16 18 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 19 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 20 N -0.94 -56.88 13.29 21.45 0.28 -56.59 16 21 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 22 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 23 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 N -0.47 -15.82 3.21 -538.19 -1.73 -17.55 16 26 C 0.08 1.83 11.00 127.77 1.41 3.24 16 27 C 0.11 2.45 5.18 85.58 0.44 2.89 16 28 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.08 0.49 8.09 -2.39 -0.02 0.47 16 30 H 0.07 0.52 8.09 -2.39 -0.02 0.50 16 31 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 32 H 0.13 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 34 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.98 8.00 -2.39 -0.02 1.96 16 37 H 0.05 1.34 8.05 -2.38 -0.02 1.32 16 38 H 0.09 3.64 8.14 -2.38 -0.02 3.62 16 39 H 0.10 3.44 7.40 -2.39 -0.02 3.42 16 40 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 41 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 42 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 43 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.11 2.22 7.44 -2.39 -0.02 2.20 16 45 H 0.11 2.15 8.10 -2.39 -0.02 2.13 16 46 H 0.10 1.95 8.13 -2.39 -0.02 1.93 16 47 H 0.05 1.22 8.11 -2.39 -0.02 1.20 16 Total: -1.00 -73.82 386.97 4.16 -69.66 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.95 Total: 12.41 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 7.22 Total: -7.21 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -6.04 Total: -120.08 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -73.82 4.16 -69.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340019873.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.747 kcal (2) G-P(sol) polarization free energy of solvation -73.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds