Wall clock time and date at job start Tue Mar 31 2020 15:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47080 * 2 1 4 4 H 1.08996 * 110.24198 * 54.57473 * 3 2 1 5 5 C 1.51179 * 110.20596 * 176.45064 * 3 2 1 6 6 C 1.38177 * 131.77679 * 316.53201 * 5 3 2 7 7 C 1.38226 * 120.02711 * 180.02562 * 6 5 3 8 8 C 1.38255 * 120.00423 * 0.04759 * 7 6 5 9 9 C 1.38220 * 120.00120 * 359.93783 * 8 7 6 10 10 C 1.38183 * 120.03220 * 0.05231 * 9 8 7 11 11 C 1.51181 * 131.78004 * 180.27905 * 10 9 8 12 12 N 1.47879 * 105.76008 * 162.59257 * 11 10 9 13 13 C 1.38587 * 111.13986 * 146.74160 * 12 11 10 14 14 N 1.31215 * 126.47044 * 244.83169 * 13 12 11 15 15 N 1.28531 * 109.85603 * 179.97438 * 14 13 12 16 16 C 1.30290 * 110.05486 * 0.02562 * 15 14 13 17 17 C 1.50702 * 126.34738 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47106 * 89.97393 * 17 16 15 19 19 C 1.50702 * 109.47106 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99882 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99972 * 179.97438 * 19 18 17 22 22 N 1.31511 * 119.99923 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99991 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.46818 * 89.99657 * 23 21 19 25 25 H 1.48496 * 109.46985 * 209.99784 * 23 21 19 26 26 H 1.48502 * 109.47052 * 329.99774 * 23 21 19 27 27 N 1.36456 * 126.47286 * 64.50827 * 13 12 11 28 28 C 1.46497 * 127.13361 * 0.04811 * 27 13 12 29 29 H 1.08996 * 109.47190 * 60.00379 * 1 2 3 30 30 H 1.09010 * 109.46833 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47484 * 300.00006 * 1 2 3 32 32 H 1.08999 * 109.47348 * 239.99488 * 2 1 3 33 33 H 1.09003 * 109.46856 * 119.99766 * 2 1 3 34 34 H 1.07992 * 119.98409 * 0.04050 * 6 5 3 35 35 H 1.08000 * 119.99801 * 180.02562 * 7 6 5 36 36 H 1.08000 * 119.99739 * 179.97438 * 8 7 6 37 37 H 1.08001 * 119.98452 * 180.02562 * 9 8 7 38 38 H 1.08996 * 110.20661 * 281.26552 * 11 10 9 39 39 H 1.08995 * 110.20740 * 43.16620 * 11 10 9 40 40 H 1.09006 * 109.47391 * 209.97449 * 17 16 15 41 41 H 1.09001 * 109.46717 * 329.97144 * 17 16 15 42 42 H 1.09003 * 109.47055 * 299.99731 * 18 17 16 43 43 H 1.08994 * 109.47299 * 59.99936 * 18 17 16 44 44 H 0.96996 * 120.00356 * 179.97438 * 22 21 19 45 45 H 1.08997 * 109.47487 * 89.99793 * 28 27 13 46 46 H 1.09005 * 109.46630 * 209.99334 * 28 27 13 47 47 H 1.09002 * 109.47301 * 329.99212 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9957 0.8333 5 6 3.5491 1.4628 0.0878 6 6 4.4358 0.7422 0.8648 7 6 5.7955 0.9610 0.7462 8 6 6.2688 1.9018 -0.1494 9 6 5.3824 2.6229 -0.9273 10 6 4.0230 2.4046 -0.8094 11 6 2.8385 3.0239 -1.5158 12 7 1.7051 2.1032 -1.2820 13 6 0.5093 2.7970 -1.1854 14 7 -0.2572 2.8861 -0.1242 15 7 -1.2871 3.6081 -0.3888 16 6 -1.2394 4.0186 -1.6245 17 6 -2.2580 4.8867 -2.3172 18 6 -1.8840 6.3587 -2.1319 19 6 -2.9023 7.2268 -2.8252 20 1 -3.7333 6.7739 -3.3455 21 6 -2.7736 8.5993 -2.7942 22 7 -3.6619 9.3568 -3.3996 23 14 -1.3367 9.3826 -1.8935 24 1 -0.1953 9.5452 -2.8295 25 1 -1.7441 10.7126 -1.3738 26 1 -0.9285 8.5125 -0.7614 27 7 -0.0902 3.5216 -2.1741 28 6 0.3946 3.7218 -3.5420 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.0663 0.0076 1.5649 35 1 6.4881 0.3972 1.3535 36 1 7.3311 2.0730 -0.2418 37 1 5.7525 3.3575 -1.6271 38 1 2.6150 4.0018 -1.0894 39 1 3.0419 3.1152 -2.5827 40 1 -2.2762 4.6476 -3.3806 41 1 -3.2429 4.7050 -1.8870 42 1 -1.8659 6.5979 -1.0685 43 1 -0.8992 6.5404 -2.5620 44 1 -3.5717 10.3223 -3.3776 45 1 0.0034 2.9336 -4.1852 46 1 0.0569 4.6911 -3.9088 47 1 1.4841 3.6898 -3.5496 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340023589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:26 Heat of formation + Delta-G solvation = 121.217267 kcal Electronic energy + Delta-G solvation = -27782.300614 eV Core-core repulsion = 24159.734020 eV Total energy + Delta-G solvation = -3622.566594 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.87290 -40.83493 -37.58751 -35.10435 -34.20582 -33.50898 -32.27511 -31.24877 -31.11648 -28.65103 -27.61365 -27.21500 -25.66282 -24.60781 -22.97604 -21.95707 -21.39590 -21.11134 -20.33509 -19.71689 -17.57024 -16.90997 -16.62707 -16.42415 -16.10987 -15.52275 -15.41569 -14.82270 -14.45973 -14.25564 -13.86926 -13.71270 -13.44256 -13.34066 -13.28626 -13.11899 -12.98020 -12.80763 -12.59135 -12.39592 -12.17167 -11.66209 -11.51855 -11.39649 -11.17518 -11.11948 -10.95518 -10.79164 -10.61280 -10.44845 -10.15031 -9.95554 -9.85185 -9.63577 -9.33174 -9.17518 -8.84961 -8.62763 -8.13418 -6.13165 -4.12799 0.96179 1.03571 1.91336 2.36311 3.08107 3.23460 3.33357 3.38608 3.39096 3.60867 3.95083 4.08502 4.37748 4.58477 4.63434 4.70990 4.79520 4.85251 4.97309 5.00060 5.08434 5.11762 5.15691 5.19804 5.20720 5.26643 5.29059 5.44021 5.52189 5.56938 5.66967 5.68720 5.82923 5.93728 5.98451 6.06439 6.10672 6.15725 6.16375 6.19338 6.24956 6.40059 6.45188 6.47404 6.61322 6.73999 7.07206 7.21414 7.27517 7.65656 8.40978 8.90191 9.03401 9.48435 10.99748 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016360 B = 0.003178 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.095650 B = 8809.661033 C = 9842.417009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 C 0.120 3.880 4 H 0.100 0.900 5 C -0.091 4.091 6 C -0.094 4.094 7 C -0.115 4.115 8 C -0.118 4.118 9 C -0.095 4.095 10 C -0.102 4.102 11 C 0.077 3.923 12 N -0.417 5.417 13 C 0.325 3.675 14 N -0.311 5.311 15 N -0.292 5.292 16 C 0.210 3.790 17 C -0.022 4.022 18 C -0.003 4.003 19 C -0.524 4.524 20 H 0.076 0.924 21 C 0.072 3.928 22 N -0.899 5.899 23 Si 0.875 3.125 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.265 1.265 27 N -0.478 5.478 28 C 0.074 3.926 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.025 0.975 43 H 0.008 0.992 44 H 0.265 0.735 45 H 0.081 0.919 46 H 0.099 0.901 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.972 -18.695 3.548 27.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.137 4.137 3 C 0.013 3.987 4 H 0.118 0.882 5 C -0.092 4.092 6 C -0.113 4.113 7 C -0.133 4.133 8 C -0.136 4.136 9 C -0.114 4.114 10 C -0.103 4.103 11 C -0.050 4.050 12 N -0.140 5.140 13 C -0.032 4.032 14 N -0.156 5.156 15 N -0.130 5.130 16 C -0.058 4.058 17 C -0.062 4.062 18 C -0.042 4.042 19 C -0.561 4.561 20 H 0.094 0.906 21 C -0.130 4.130 22 N -0.537 5.537 23 Si 0.703 3.297 24 H -0.204 1.204 25 H -0.211 1.211 26 H -0.190 1.190 27 N -0.173 5.173 28 C -0.069 4.069 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.114 0.886 42 H 0.044 0.956 43 H 0.026 0.974 44 H 0.074 0.926 45 H 0.099 0.901 46 H 0.118 0.882 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 19.333 -19.084 4.455 27.528 hybrid contribution 1.377 1.313 -0.526 1.975 sum 20.710 -17.770 3.929 27.571 Atomic orbital electron populations 1.21749 0.94631 1.00691 1.03098 1.21418 0.96911 0.93280 1.02088 1.21225 0.90222 0.97257 0.90038 0.88237 1.20495 0.94876 0.96928 0.96905 1.20471 0.92434 0.99301 0.99081 1.21103 0.95040 0.98409 0.98794 1.21079 0.99577 0.96533 0.96427 1.20464 0.91096 0.99959 0.99877 1.20367 0.93945 0.97867 0.98120 1.21677 0.87077 0.94642 1.01607 1.61788 0.97467 1.22414 1.32325 1.22405 0.96392 0.97727 0.86639 1.74498 1.02818 1.18059 1.20194 1.74030 1.15833 1.11490 1.11666 1.25605 0.88967 0.99391 0.91794 1.20240 0.93989 0.93819 0.98172 1.19547 0.96845 0.89876 0.97934 1.21012 1.10361 0.90804 1.33967 0.90554 1.24960 0.95951 0.97276 0.94834 1.69892 1.35354 1.04991 1.43453 0.86843 0.83027 0.79024 0.80853 1.20360 1.21105 1.18983 1.46084 1.19123 1.39679 1.12367 1.22142 1.00924 1.04573 0.79245 0.92845 0.93410 0.91654 0.91393 0.91224 0.85680 0.85541 0.85566 0.85816 0.91144 0.88286 0.90548 0.88579 0.95647 0.97412 0.92558 0.90062 0.88190 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.63 37.16 0.32 -1.47 16 2 C -0.10 -1.07 5.55 -26.73 -0.15 -1.21 16 3 C 0.12 1.46 2.38 -67.99 -0.16 1.30 16 4 H 0.10 1.41 6.92 -51.93 -0.36 1.06 16 5 C -0.09 -0.98 5.69 -104.33 -0.59 -1.58 16 6 C -0.09 -0.84 9.76 -39.61 -0.39 -1.22 16 7 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 8 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 9 C -0.10 -0.84 10.04 -39.61 -0.40 -1.24 16 10 C -0.10 -1.09 6.26 -104.33 -0.65 -1.74 16 11 C 0.08 0.87 5.70 -4.20 -0.02 0.84 16 12 N -0.42 -5.41 5.06 -167.38 -0.85 -6.26 16 13 C 0.32 5.13 5.34 -318.86 -1.70 3.43 16 14 N -0.31 -5.71 9.04 30.32 0.27 -5.44 16 15 N -0.29 -5.92 12.18 32.99 0.40 -5.52 16 16 C 0.21 3.90 7.32 -154.02 -1.13 2.77 16 17 C -0.02 -0.43 5.36 -27.88 -0.15 -0.58 16 18 C 0.00 -0.08 4.02 -27.88 -0.11 -0.19 16 19 C -0.52 -14.27 9.66 -34.44 -0.33 -14.60 16 20 H 0.08 2.20 7.99 -52.48 -0.42 1.78 16 21 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 22 N -0.90 -26.99 13.96 55.43 0.77 -26.21 16 23 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 27 N -0.48 -7.48 3.21 -121.46 -0.39 -7.87 16 28 C 0.07 0.85 10.85 59.85 0.65 1.50 16 29 H 0.05 0.79 6.37 -51.93 -0.33 0.46 16 30 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.06 0.89 7.79 -51.93 -0.40 0.49 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.62 7.80 -51.93 -0.41 0.21 16 34 H 0.13 0.88 7.83 -52.49 -0.41 0.47 16 35 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.07 0.90 7.77 -51.93 -0.40 0.49 16 39 H 0.10 0.92 6.79 -51.93 -0.35 0.57 16 40 H 0.08 1.32 7.95 -51.93 -0.41 0.90 16 41 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 42 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 43 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.10 1.17 7.91 -51.93 -0.41 0.76 16 47 H 0.08 0.78 5.85 -51.93 -0.30 0.48 16 LS Contribution 374.59 15.07 5.64 5.64 Total: -1.00 -32.79 374.59 -11.63 -44.42 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -7.11 Total: -0.87 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -5.71 Total: -14.66 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.21 Total: -51.30 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.79 -11.63 -44.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340023589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.635 kcal (2) G-P(sol) polarization free energy of solvation -32.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds