Wall clock time and date at job start Tue Mar 31 2020 15:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47080 * 2 1 4 4 H 1.08996 * 110.24198 * 54.57473 * 3 2 1 5 5 C 1.51179 * 110.20596 * 176.45064 * 3 2 1 6 6 C 1.38177 * 131.77679 * 316.53201 * 5 3 2 7 7 C 1.38226 * 120.02711 * 180.02562 * 6 5 3 8 8 C 1.38255 * 120.00423 * 0.04759 * 7 6 5 9 9 C 1.38220 * 120.00120 * 359.93783 * 8 7 6 10 10 C 1.38183 * 120.03220 * 0.05231 * 9 8 7 11 11 C 1.51181 * 131.78004 * 180.27905 * 10 9 8 12 12 N 1.47879 * 105.76008 * 162.59257 * 11 10 9 13 13 C 1.38587 * 111.13986 * 146.74160 * 12 11 10 14 14 N 1.31215 * 126.47044 * 244.83169 * 13 12 11 15 15 N 1.28531 * 109.85603 * 179.97438 * 14 13 12 16 16 C 1.30290 * 110.05486 * 0.02562 * 15 14 13 17 17 C 1.50702 * 126.34738 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47106 * 89.97393 * 17 16 15 19 19 C 1.50702 * 109.47106 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99882 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99972 * 179.97438 * 19 18 17 22 22 N 1.31511 * 119.99923 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99991 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.46818 * 89.99657 * 23 21 19 25 25 H 1.48496 * 109.46985 * 209.99784 * 23 21 19 26 26 H 1.48502 * 109.47052 * 329.99774 * 23 21 19 27 27 N 1.36456 * 126.47286 * 64.50827 * 13 12 11 28 28 C 1.46497 * 127.13361 * 0.04811 * 27 13 12 29 29 H 1.08996 * 109.47190 * 60.00379 * 1 2 3 30 30 H 1.09010 * 109.46833 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47484 * 300.00006 * 1 2 3 32 32 H 1.08999 * 109.47348 * 239.99488 * 2 1 3 33 33 H 1.09003 * 109.46856 * 119.99766 * 2 1 3 34 34 H 1.07992 * 119.98409 * 0.04050 * 6 5 3 35 35 H 1.08000 * 119.99801 * 180.02562 * 7 6 5 36 36 H 1.08000 * 119.99739 * 179.97438 * 8 7 6 37 37 H 1.08001 * 119.98452 * 180.02562 * 9 8 7 38 38 H 1.08996 * 110.20661 * 281.26552 * 11 10 9 39 39 H 1.08995 * 110.20740 * 43.16620 * 11 10 9 40 40 H 1.09006 * 109.47391 * 209.97449 * 17 16 15 41 41 H 1.09001 * 109.46717 * 329.97144 * 17 16 15 42 42 H 1.09003 * 109.47055 * 299.99731 * 18 17 16 43 43 H 1.08994 * 109.47299 * 59.99936 * 18 17 16 44 44 H 0.96996 * 120.00356 * 179.97438 * 22 21 19 45 45 H 1.08997 * 109.47487 * 89.99793 * 28 27 13 46 46 H 1.09005 * 109.46630 * 209.99334 * 28 27 13 47 47 H 1.09002 * 109.47301 * 329.99212 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9957 0.8333 5 6 3.5491 1.4628 0.0878 6 6 4.4358 0.7422 0.8648 7 6 5.7955 0.9610 0.7462 8 6 6.2688 1.9018 -0.1494 9 6 5.3824 2.6229 -0.9273 10 6 4.0230 2.4046 -0.8094 11 6 2.8385 3.0239 -1.5158 12 7 1.7051 2.1032 -1.2820 13 6 0.5093 2.7970 -1.1854 14 7 -0.2572 2.8861 -0.1242 15 7 -1.2871 3.6081 -0.3888 16 6 -1.2394 4.0186 -1.6245 17 6 -2.2580 4.8867 -2.3172 18 6 -1.8840 6.3587 -2.1319 19 6 -2.9023 7.2268 -2.8252 20 1 -3.7333 6.7739 -3.3455 21 6 -2.7736 8.5993 -2.7942 22 7 -3.6619 9.3568 -3.3996 23 14 -1.3367 9.3826 -1.8935 24 1 -0.1953 9.5452 -2.8295 25 1 -1.7441 10.7126 -1.3738 26 1 -0.9285 8.5125 -0.7614 27 7 -0.0902 3.5216 -2.1741 28 6 0.3946 3.7218 -3.5420 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.0663 0.0076 1.5649 35 1 6.4881 0.3972 1.3535 36 1 7.3311 2.0730 -0.2418 37 1 5.7525 3.3575 -1.6271 38 1 2.6150 4.0018 -1.0894 39 1 3.0419 3.1152 -2.5827 40 1 -2.2762 4.6476 -3.3806 41 1 -3.2429 4.7050 -1.8870 42 1 -1.8659 6.5979 -1.0685 43 1 -0.8992 6.5404 -2.5620 44 1 -3.5717 10.3223 -3.3776 45 1 0.0034 2.9336 -4.1852 46 1 0.0569 4.6911 -3.9088 47 1 1.4841 3.6898 -3.5496 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340023589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:25 Heat of formation + Delta-G solvation = 104.127518 kcal Electronic energy + Delta-G solvation = -27783.041681 eV Core-core repulsion = 24159.734020 eV Total energy + Delta-G solvation = -3623.307661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.16245 -41.67059 -38.39622 -36.48110 -35.79056 -34.53986 -33.94576 -32.45145 -31.82900 -30.07124 -28.64732 -28.13206 -27.31980 -25.58529 -23.87844 -23.40017 -22.37680 -22.19129 -21.64519 -20.82091 -19.08583 -18.49738 -17.73377 -17.35146 -17.01795 -16.50562 -16.45740 -16.20177 -15.67512 -15.36499 -15.15087 -14.96459 -14.68427 -14.49946 -14.34057 -14.22120 -14.08603 -13.92796 -13.66743 -13.37972 -13.25445 -12.99345 -12.87334 -12.77403 -12.40195 -12.13412 -12.07274 -12.04847 -11.87896 -11.86259 -11.65748 -11.58050 -11.44149 -11.14925 -10.85980 -10.78932 -9.81516 -9.73918 -9.31070 -8.31904 -6.35866 0.29350 0.39688 0.65441 1.18184 1.29388 1.35091 1.45243 1.70741 2.31988 2.54601 2.74629 3.03334 3.12663 3.26131 3.44128 3.68839 3.80676 3.94211 3.99438 4.09053 4.11126 4.19387 4.24649 4.26621 4.34488 4.45806 4.48509 4.51697 4.58108 4.59873 4.68086 4.73427 4.78341 4.85085 4.92443 4.95675 5.02353 5.08222 5.09274 5.23784 5.26943 5.39635 5.41900 5.42232 5.47023 5.56027 5.58738 5.62134 6.01236 6.06080 6.22792 6.71429 7.28790 7.67682 8.84186 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016360 B = 0.003178 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.095650 B = 8809.661033 C = 9842.417009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.092 4.092 3 C 0.119 3.881 4 H 0.073 0.927 5 C -0.110 4.110 6 C -0.100 4.100 7 C -0.114 4.114 8 C -0.117 4.117 9 C -0.101 4.101 10 C -0.120 4.120 11 C 0.078 3.922 12 N -0.413 5.413 13 C 0.342 3.658 14 N -0.338 5.338 15 N -0.326 5.326 16 C 0.197 3.803 17 C -0.010 4.010 18 C 0.006 3.994 19 C -0.527 4.527 20 H 0.048 0.952 21 C 0.015 3.985 22 N -0.943 5.943 23 Si 0.939 3.061 24 H -0.259 1.259 25 H -0.283 1.283 26 H -0.264 1.264 27 N -0.475 5.475 28 C 0.065 3.935 29 H 0.025 0.975 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.141 0.859 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.141 0.859 38 H 0.052 0.948 39 H 0.121 0.879 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.008 0.992 43 H 0.020 0.980 44 H 0.268 0.732 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.901 -20.079 3.494 31.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 C 0.012 3.988 4 H 0.090 0.910 5 C -0.110 4.110 6 C -0.119 4.119 7 C -0.132 4.132 8 C -0.135 4.135 9 C -0.119 4.119 10 C -0.121 4.121 11 C -0.049 4.049 12 N -0.137 5.137 13 C -0.015 4.015 14 N -0.182 5.182 15 N -0.165 5.165 16 C -0.071 4.071 17 C -0.049 4.049 18 C -0.033 4.033 19 C -0.565 4.565 20 H 0.066 0.934 21 C -0.182 4.182 22 N -0.584 5.584 23 Si 0.763 3.237 24 H -0.184 1.184 25 H -0.208 1.208 26 H -0.189 1.189 27 N -0.169 5.169 28 C -0.076 4.076 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.158 0.842 35 H 0.172 0.828 36 H 0.171 0.829 37 H 0.159 0.841 38 H 0.070 0.930 39 H 0.139 0.861 40 H 0.114 0.886 41 H 0.105 0.895 42 H 0.026 0.974 43 H 0.038 0.962 44 H 0.077 0.923 45 H 0.119 0.881 46 H 0.117 0.883 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 23.282 -20.484 4.382 31.319 hybrid contribution 0.214 1.633 -0.519 1.727 sum 23.496 -18.851 3.863 30.370 Atomic orbital electron populations 1.21653 0.96059 1.00953 1.00752 1.21404 0.95396 0.92816 1.03356 1.21194 0.91654 0.97352 0.88645 0.90952 1.20467 0.93856 0.98376 0.98342 1.20749 0.92893 0.99319 0.98896 1.21490 0.94883 0.98175 0.98606 1.21478 1.00854 0.95664 0.95483 1.20748 0.90384 1.00406 1.00376 1.20415 0.94506 0.98447 0.98718 1.21710 0.86783 0.93385 1.02978 1.61923 0.96911 1.22158 1.32688 1.22677 0.96658 0.96238 0.85942 1.74437 1.03150 1.19047 1.21595 1.73934 1.17164 1.12516 1.12883 1.25234 0.89980 1.00220 0.91703 1.19957 0.93849 0.91659 0.99463 1.19371 0.96126 0.91658 0.96126 1.21305 1.10332 0.91473 1.33372 0.93392 1.25801 0.98682 0.98012 0.95751 1.70023 1.37537 1.05450 1.45343 0.85827 0.80127 0.77886 0.79816 1.18412 1.20850 1.18856 1.46227 1.18111 1.38925 1.13652 1.22494 1.02534 1.05302 0.77296 0.95553 0.91773 0.93541 0.90872 0.89013 0.84150 0.82780 0.82859 0.84110 0.92977 0.86133 0.88552 0.89465 0.97378 0.96158 0.92339 0.88065 0.88265 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.63 71.98 0.62 -2.79 16 2 C -0.09 -1.89 5.55 30.60 0.17 -1.72 16 3 C 0.12 2.83 2.38 44.10 0.10 2.94 16 4 H 0.07 2.13 6.92 -2.39 -0.02 2.11 16 5 C -0.11 -2.19 5.69 -19.68 -0.11 -2.31 16 6 C -0.10 -1.52 9.76 22.25 0.22 -1.30 16 7 C -0.11 -1.33 10.05 22.27 0.22 -1.10 16 8 C -0.12 -1.36 10.05 22.27 0.22 -1.14 16 9 C -0.10 -1.48 10.04 22.25 0.22 -1.26 16 10 C -0.12 -2.33 6.26 -19.68 -0.12 -2.45 16 11 C 0.08 1.65 5.70 85.52 0.49 2.14 16 12 N -0.41 -10.42 5.06 -683.46 -3.46 -13.88 16 13 C 0.34 10.80 5.34 260.11 1.39 12.19 16 14 N -0.34 -12.78 9.04 -58.00 -0.52 -13.30 16 15 N -0.33 -13.64 12.18 -49.54 -0.60 -14.24 16 16 C 0.20 7.40 7.32 137.64 1.01 8.41 16 17 C -0.01 -0.37 5.36 29.85 0.16 -0.21 16 18 C 0.01 0.27 4.02 29.85 0.12 0.39 16 19 C -0.53 -29.23 9.66 25.60 0.25 -28.99 16 20 H 0.05 2.86 7.99 -2.91 -0.02 2.84 16 21 C 0.02 0.88 5.47 84.66 0.46 1.35 16 22 N -0.94 -57.72 13.96 21.45 0.30 -57.42 16 23 Si 0.94 44.18 27.47 68.60 1.88 46.06 16 24 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 26 H -0.26 -12.29 6.54 99.48 0.65 -11.63 16 27 N -0.48 -14.59 3.21 -538.18 -1.73 -16.32 16 28 C 0.06 1.36 10.85 127.77 1.39 2.74 16 29 H 0.03 0.78 6.37 -2.39 -0.02 0.76 16 30 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.05 1.32 7.79 -2.39 -0.02 1.30 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.09 1.46 7.80 -2.39 -0.02 1.44 16 34 H 0.14 1.58 7.83 -2.91 -0.02 1.56 16 35 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 36 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 37 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.05 1.30 7.77 -2.39 -0.02 1.28 16 39 H 0.12 1.94 6.79 -2.39 -0.02 1.93 16 40 H 0.10 3.29 7.95 -2.38 -0.02 3.27 16 41 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 42 H 0.01 0.39 7.20 -2.39 -0.02 0.38 16 43 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 44 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 45 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.10 2.13 7.91 -2.38 -0.02 2.11 16 47 H 0.11 1.72 5.85 -2.39 -0.01 1.70 16 Total: -1.00 -73.24 374.59 3.59 -69.66 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.91 Total: 12.55 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 6.81 Total: -13.10 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -6.02 Total: -115.17 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.06 kcal Total: -73.24 3.59 -69.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340023589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.783 kcal (2) G-P(sol) polarization free energy of solvation -73.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds