Wall clock time and date at job start Tue Mar 31 2020 14:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 119.99495 * 2 1 4 4 N 1.46503 * 109.46659 * 124.99721 * 3 2 1 5 5 C 1.36695 * 127.13748 * 273.80526 * 4 3 2 6 6 C 1.50698 * 126.34079 * 0.02862 * 5 4 3 7 7 C 1.53004 * 109.47129 * 269.99474 * 6 5 4 8 8 C 1.50698 * 109.47129 * 180.02562 * 7 6 5 9 9 H 1.07999 * 120.00114 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99575 * 179.97438 * 8 7 6 11 11 N 1.31521 * 119.99612 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00387 * 0.02562 * 10 8 7 13 13 H 1.48493 * 109.47286 * 89.99679 * 12 10 8 14 14 H 1.48501 * 109.47138 * 209.99544 * 12 10 8 15 15 H 1.48496 * 109.46822 * 329.99313 * 12 10 8 16 16 N 1.30312 * 107.31280 * 180.02562 * 5 4 3 17 17 N 1.28524 * 110.05440 * 359.97438 * 16 5 4 18 18 C 1.31220 * 109.85817 * 0.02562 * 17 16 5 19 19 N 1.38660 * 126.48327 * 180.02562 * 18 17 16 20 20 C 1.46495 * 120.00518 * 174.26283 * 19 18 17 21 21 C 1.39767 * 119.99673 * 354.27085 * 19 18 17 22 22 C 1.38915 * 120.07465 * 5.18326 * 21 19 18 23 23 C 1.38097 * 119.92530 * 179.75014 * 22 21 19 24 24 C 1.38298 * 120.07230 * 0.54895 * 23 22 21 25 25 C 1.50706 * 119.92187 * 179.72357 * 24 23 22 26 26 C 1.38289 * 120.14932 * 359.70242 * 24 23 22 27 27 C 1.38095 * 120.07691 * 0.02562 * 26 24 23 28 28 H 1.07999 * 120.00514 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99766 * 179.97438 * 1 2 3 30 30 H 1.07995 * 120.00174 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.46964 * 4.99714 * 3 2 1 32 32 H 1.08994 * 109.47009 * 244.99853 * 3 2 1 33 33 H 1.08995 * 109.47316 * 29.99540 * 6 5 4 34 34 H 1.09002 * 109.46865 * 150.00013 * 6 5 4 35 35 H 1.09000 * 109.47526 * 300.00361 * 7 6 5 36 36 H 1.08996 * 109.46853 * 60.00054 * 7 6 5 37 37 H 0.97002 * 119.99971 * 180.02562 * 11 10 8 38 38 H 1.09006 * 109.46883 * 84.46760 * 20 19 18 39 39 H 1.09001 * 109.47798 * 204.46691 * 20 19 18 40 40 H 1.08996 * 109.47517 * 324.47020 * 20 19 18 41 41 H 1.08002 * 120.03616 * 0.02562 * 22 21 19 42 42 H 1.08005 * 119.96665 * 180.29845 * 23 22 21 43 43 H 1.08996 * 109.46987 * 269.98154 * 25 24 23 44 44 H 1.08999 * 109.47031 * 29.98087 * 25 24 23 45 45 H 1.08996 * 109.46390 * 149.98215 * 25 24 23 46 46 H 1.07999 * 119.95734 * 179.97438 * 26 24 23 47 47 H 1.07992 * 120.04075 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3320 1.1315 5 6 2.7241 1.7264 2.4123 6 6 1.3997 2.2209 2.9344 7 6 1.3232 3.7405 2.7730 8 6 -0.0009 4.2351 3.2957 9 1 -0.7161 3.5356 3.7027 10 6 -0.2988 5.5806 3.2552 11 7 -1.4542 6.0124 3.7119 12 14 0.9385 6.7905 2.5519 13 1 0.7031 6.9482 1.0942 14 1 0.7818 8.1056 3.2236 15 1 2.3142 6.2797 2.7788 16 7 3.8244 1.5955 3.0980 17 7 4.7635 1.1480 2.3433 18 6 4.3092 0.9685 1.1254 19 7 5.0292 0.4976 0.0379 20 6 4.3485 0.2322 -1.2319 21 6 6.4043 0.2761 0.1533 22 6 7.0324 0.4235 1.3836 23 6 8.3904 0.1988 1.4952 24 6 9.1270 -0.1615 0.3815 25 6 10.6099 -0.3999 0.5059 26 6 8.5058 -0.3041 -0.8457 27 6 7.1472 -0.0864 -0.9632 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3584 2.1316 0.0895 32 1 2.6212 1.4027 -0.9313 33 1 0.5906 1.7546 2.3724 34 1 1.3056 1.9624 3.9891 35 1 2.1323 4.2069 3.3350 36 1 1.4173 3.9990 1.7183 37 1 -1.6639 6.9590 3.6831 38 1 4.2736 1.1569 -1.8041 39 1 4.9166 -0.5029 -1.8020 40 1 3.3489 -0.1549 -1.0344 41 1 6.4585 0.7092 2.2528 42 1 8.8785 0.3085 2.4524 43 1 11.1438 0.5342 0.3315 44 1 10.8362 -0.7662 1.5072 45 1 10.9218 -1.1399 -0.2310 46 1 9.0841 -0.5852 -1.7135 47 1 6.6628 -0.1974 -1.9220 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340423004.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:28 Heat of formation + Delta-G solvation = 150.512599 kcal Electronic energy + Delta-G solvation = -27417.904385 eV Core-core repulsion = 23796.608132 eV Total energy + Delta-G solvation = -3621.296253 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.83195 -39.75913 -37.20060 -36.23811 -34.14628 -32.85615 -32.14481 -31.54900 -31.17248 -29.32915 -28.01274 -26.85848 -25.78033 -25.03353 -22.66567 -22.13804 -21.54030 -20.84294 -20.16280 -19.91684 -17.59185 -17.19919 -16.84604 -16.36293 -15.93356 -15.57529 -15.06119 -14.68976 -14.59650 -14.35286 -14.09774 -13.90850 -13.75532 -13.60313 -13.47979 -13.32515 -12.80675 -12.68534 -12.33917 -12.29652 -11.89496 -11.82641 -11.68461 -11.60767 -11.26192 -11.12163 -10.86833 -10.55685 -10.36803 -10.21659 -9.92754 -9.89939 -9.78186 -9.66881 -9.31650 -8.94233 -8.68696 -8.61525 -7.31354 -6.12362 -4.11832 1.28743 1.43842 1.68314 2.12591 2.26572 3.03343 3.20006 3.24739 3.34789 3.41063 3.81353 4.34613 4.39053 4.45907 4.55674 4.72038 4.83989 4.85065 4.86065 4.89859 4.96446 5.11551 5.16823 5.21596 5.28618 5.30292 5.35928 5.42940 5.48177 5.59720 5.65221 5.80005 5.82002 5.93452 6.14027 6.23416 6.24344 6.27029 6.33054 6.37286 6.40531 6.50794 6.64859 6.81810 7.00366 7.09524 7.22198 7.27490 7.38226 7.66985 8.41934 8.90921 9.09384 9.49506 11.00425 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014866 B = 0.003153 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.073488 B = 8878.013417 C = 9871.686520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.196 4.196 3 C 0.120 3.880 4 N -0.489 5.489 5 C 0.211 3.789 6 C -0.020 4.020 7 C -0.004 4.004 8 C -0.522 4.522 9 H 0.076 0.924 10 C 0.072 3.928 11 N -0.899 5.899 12 Si 0.874 3.126 13 H -0.278 1.278 14 H -0.285 1.285 15 H -0.264 1.264 16 N -0.290 5.290 17 N -0.329 5.329 18 C 0.415 3.585 19 N -0.526 5.526 20 C 0.069 3.931 21 C 0.184 3.816 22 C -0.168 4.168 23 C -0.086 4.086 24 C -0.129 4.129 25 C -0.107 4.107 26 C -0.092 4.092 27 C -0.173 4.173 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.026 0.974 36 H 0.007 0.993 37 H 0.264 0.736 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.184 0.816 42 H 0.123 0.877 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.120 0.880 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.689 -15.492 -14.302 25.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.215 4.215 3 C -0.002 4.002 4 N -0.187 5.187 5 C -0.057 4.057 6 C -0.060 4.060 7 C -0.043 4.043 8 C -0.560 4.560 9 H 0.094 0.906 10 C -0.130 4.130 11 N -0.537 5.537 12 Si 0.702 3.298 13 H -0.204 1.204 14 H -0.211 1.211 15 H -0.189 1.189 16 N -0.125 5.125 17 N -0.173 5.173 18 C 0.060 3.940 19 N -0.237 5.237 20 C -0.074 4.074 21 C 0.088 3.912 22 C -0.190 4.190 23 C -0.104 4.104 24 C -0.131 4.131 25 C -0.164 4.164 26 C -0.111 4.111 27 C -0.195 4.195 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.044 0.956 36 H 0.025 0.975 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.200 0.800 42 H 0.141 0.859 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.138 0.862 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.425 -15.288 -13.158 25.393 hybrid contribution -0.396 0.701 -1.743 1.920 sum 15.029 -14.587 -14.901 25.704 Atomic orbital electron populations 1.24110 0.95463 1.03194 0.95294 1.23027 0.96535 0.97415 1.04495 1.21342 0.92547 0.98224 0.88068 1.46192 1.08444 1.52572 1.11499 1.25360 0.99911 1.00674 0.79764 1.20210 0.85432 0.98761 1.01570 1.19554 0.98722 0.89560 0.96422 1.21002 1.00160 0.93545 1.41309 0.90585 1.24959 0.95027 0.98283 0.94759 1.69900 1.22085 1.15186 1.46548 0.86854 0.82811 0.80907 0.79261 1.20409 1.21119 1.18878 1.74034 0.96444 1.17185 1.24849 1.74058 1.22450 1.23682 0.97149 1.20921 0.81882 1.00802 0.90372 1.42572 1.05018 1.67782 1.08359 1.22345 0.98801 1.01939 0.84287 1.17686 0.80508 0.98096 0.94959 1.22440 0.95645 1.01949 0.98943 1.20947 0.93339 0.98113 0.98039 1.19852 0.96127 1.03393 0.93727 1.20695 0.91931 1.01506 1.02260 1.20654 0.93455 1.00031 0.96919 1.20612 0.94366 1.07651 0.96839 0.87130 0.87564 0.86992 0.87144 0.87720 0.90700 0.88689 0.95577 0.97481 0.92588 0.91896 0.89326 0.89848 0.80010 0.85947 0.91703 0.91837 0.92065 0.86171 0.86059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 14.32 29.01 0.42 -0.91 16 2 C -0.20 -1.95 8.75 -36.03 -0.32 -2.27 16 3 C 0.12 1.41 5.41 -5.19 -0.03 1.38 16 4 N -0.49 -7.72 2.79 -115.34 -0.32 -8.04 16 5 C 0.21 3.98 7.32 -154.04 -1.13 2.85 16 6 C -0.02 -0.39 5.43 -27.88 -0.15 -0.54 16 7 C 0.00 -0.09 4.02 -27.88 -0.11 -0.21 16 8 C -0.52 -14.19 9.66 -34.44 -0.33 -14.52 16 9 H 0.08 2.18 7.99 -52.49 -0.42 1.76 16 10 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 11 N -0.90 -26.92 13.96 55.43 0.77 -26.14 16 12 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 16 N -0.29 -6.00 12.18 32.98 0.40 -5.60 16 17 N -0.33 -6.31 8.46 30.34 0.26 -6.05 16 18 C 0.41 6.83 8.23 -318.70 -2.62 4.21 16 19 N -0.53 -6.98 3.20 -122.19 -0.39 -7.37 16 20 C 0.07 0.60 8.44 59.84 0.51 1.10 16 21 C 0.18 2.48 6.51 -83.74 -0.55 1.93 16 22 C -0.17 -2.47 9.19 -39.38 -0.36 -2.83 16 23 C -0.09 -1.06 9.69 -39.61 -0.38 -1.44 16 24 C -0.13 -1.39 5.88 -104.58 -0.62 -2.00 16 25 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 26 C -0.09 -0.93 9.69 -39.62 -0.38 -1.31 16 27 C -0.17 -1.87 9.17 -39.38 -0.36 -2.23 16 28 H 0.11 1.07 7.84 -52.49 -0.41 0.66 16 29 H 0.11 0.82 8.06 -52.48 -0.42 0.40 16 30 H 0.11 1.07 7.40 -52.49 -0.39 0.68 16 31 H 0.11 1.36 7.68 -51.93 -0.40 0.97 16 32 H 0.10 0.97 4.86 -51.93 -0.25 0.71 16 33 H 0.07 1.31 7.97 -51.93 -0.41 0.90 16 34 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 35 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 36 H 0.01 0.16 7.57 -51.93 -0.39 -0.24 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.06 0.48 7.49 -51.93 -0.39 0.09 16 39 H 0.09 0.58 6.13 -51.93 -0.32 0.26 16 40 H 0.08 0.67 4.15 -51.93 -0.22 0.45 16 41 H 0.18 3.10 4.48 -68.15 -0.31 2.80 16 42 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 45 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 46 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 47 H 0.12 1.00 6.18 -52.49 -0.32 0.68 16 LS Contribution 377.89 15.07 5.69 5.69 Total: -1.00 -33.41 377.89 -11.14 -44.55 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.72 Total: 1.46 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -6.16 Total: -15.34 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.72 Total: -53.21 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.41 -11.14 -44.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340423004.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.060 kcal (2) G-P(sol) polarization free energy of solvation -33.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds