Wall clock time and date at job start Tue Mar 31 2020 14:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 119.99495 * 2 1 4 4 N 1.46503 * 109.46659 * 124.99721 * 3 2 1 5 5 C 1.36695 * 127.13748 * 273.80526 * 4 3 2 6 6 C 1.50698 * 126.34079 * 0.02862 * 5 4 3 7 7 C 1.53004 * 109.47129 * 269.99474 * 6 5 4 8 8 C 1.50698 * 109.47129 * 180.02562 * 7 6 5 9 9 H 1.07999 * 120.00114 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99575 * 179.97438 * 8 7 6 11 11 N 1.31521 * 119.99612 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00387 * 0.02562 * 10 8 7 13 13 H 1.48493 * 109.47286 * 89.99679 * 12 10 8 14 14 H 1.48501 * 109.47138 * 209.99544 * 12 10 8 15 15 H 1.48496 * 109.46822 * 329.99313 * 12 10 8 16 16 N 1.30312 * 107.31280 * 180.02562 * 5 4 3 17 17 N 1.28524 * 110.05440 * 359.97438 * 16 5 4 18 18 C 1.31220 * 109.85817 * 0.02562 * 17 16 5 19 19 N 1.38660 * 126.48327 * 180.02562 * 18 17 16 20 20 C 1.46495 * 120.00518 * 174.26283 * 19 18 17 21 21 C 1.39767 * 119.99673 * 354.27085 * 19 18 17 22 22 C 1.38915 * 120.07465 * 5.18326 * 21 19 18 23 23 C 1.38097 * 119.92530 * 179.75014 * 22 21 19 24 24 C 1.38298 * 120.07230 * 0.54895 * 23 22 21 25 25 C 1.50706 * 119.92187 * 179.72357 * 24 23 22 26 26 C 1.38289 * 120.14932 * 359.70242 * 24 23 22 27 27 C 1.38095 * 120.07691 * 0.02562 * 26 24 23 28 28 H 1.07999 * 120.00514 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99766 * 179.97438 * 1 2 3 30 30 H 1.07995 * 120.00174 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.46964 * 4.99714 * 3 2 1 32 32 H 1.08994 * 109.47009 * 244.99853 * 3 2 1 33 33 H 1.08995 * 109.47316 * 29.99540 * 6 5 4 34 34 H 1.09002 * 109.46865 * 150.00013 * 6 5 4 35 35 H 1.09000 * 109.47526 * 300.00361 * 7 6 5 36 36 H 1.08996 * 109.46853 * 60.00054 * 7 6 5 37 37 H 0.97002 * 119.99971 * 180.02562 * 11 10 8 38 38 H 1.09006 * 109.46883 * 84.46760 * 20 19 18 39 39 H 1.09001 * 109.47798 * 204.46691 * 20 19 18 40 40 H 1.08996 * 109.47517 * 324.47020 * 20 19 18 41 41 H 1.08002 * 120.03616 * 0.02562 * 22 21 19 42 42 H 1.08005 * 119.96665 * 180.29845 * 23 22 21 43 43 H 1.08996 * 109.46987 * 269.98154 * 25 24 23 44 44 H 1.08999 * 109.47031 * 29.98087 * 25 24 23 45 45 H 1.08996 * 109.46390 * 149.98215 * 25 24 23 46 46 H 1.07999 * 119.95734 * 179.97438 * 26 24 23 47 47 H 1.07992 * 120.04075 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3320 1.1315 5 6 2.7241 1.7264 2.4123 6 6 1.3997 2.2209 2.9344 7 6 1.3232 3.7405 2.7730 8 6 -0.0009 4.2351 3.2957 9 1 -0.7161 3.5356 3.7027 10 6 -0.2988 5.5806 3.2552 11 7 -1.4542 6.0124 3.7119 12 14 0.9385 6.7905 2.5519 13 1 0.7031 6.9482 1.0942 14 1 0.7818 8.1056 3.2236 15 1 2.3142 6.2797 2.7788 16 7 3.8244 1.5955 3.0980 17 7 4.7635 1.1480 2.3433 18 6 4.3092 0.9685 1.1254 19 7 5.0292 0.4976 0.0379 20 6 4.3485 0.2322 -1.2319 21 6 6.4043 0.2761 0.1533 22 6 7.0324 0.4235 1.3836 23 6 8.3904 0.1988 1.4952 24 6 9.1270 -0.1615 0.3815 25 6 10.6099 -0.3999 0.5059 26 6 8.5058 -0.3041 -0.8457 27 6 7.1472 -0.0864 -0.9632 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3584 2.1316 0.0895 32 1 2.6212 1.4027 -0.9313 33 1 0.5906 1.7546 2.3724 34 1 1.3056 1.9624 3.9891 35 1 2.1323 4.2069 3.3350 36 1 1.4173 3.9990 1.7183 37 1 -1.6639 6.9590 3.6831 38 1 4.2736 1.1569 -1.8041 39 1 4.9166 -0.5029 -1.8020 40 1 3.3489 -0.1549 -1.0344 41 1 6.4585 0.7092 2.2528 42 1 8.8785 0.3085 2.4524 43 1 11.1438 0.5342 0.3315 44 1 10.8362 -0.7662 1.5072 45 1 10.9218 -1.1399 -0.2310 46 1 9.0841 -0.5852 -1.7135 47 1 6.6628 -0.1974 -1.9220 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340423004.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:27 Heat of formation + Delta-G solvation = 135.848630 kcal Electronic energy + Delta-G solvation = -27418.540262 eV Core-core repulsion = 23796.608132 eV Total energy + Delta-G solvation = -3621.932130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.11876 -40.66638 -38.15959 -37.27437 -35.92176 -34.02650 -33.74268 -32.50843 -32.18714 -30.64904 -29.06767 -27.72253 -27.30126 -26.10500 -23.67572 -23.42540 -22.92286 -21.89890 -21.43397 -20.87829 -19.09159 -18.47514 -18.20145 -17.54382 -16.98189 -16.39752 -16.36534 -15.93486 -15.56455 -15.52486 -15.23799 -15.06602 -14.90022 -14.75033 -14.60732 -14.45789 -14.40379 -13.69023 -13.47838 -13.10405 -12.99436 -12.94929 -12.82470 -12.62764 -12.50800 -12.35271 -12.15581 -12.02913 -11.84975 -11.69334 -11.64708 -11.44548 -11.06058 -10.95344 -10.78834 -10.57469 -9.91587 -9.79172 -8.34835 -8.31298 -6.34876 0.32990 0.54267 0.71794 0.97888 1.28947 1.29306 1.35340 1.45748 1.83488 2.03900 2.32329 2.92340 3.03789 3.32330 3.55400 3.69632 3.73333 3.83834 3.99834 4.07002 4.10246 4.21219 4.25565 4.32380 4.43365 4.44925 4.51498 4.56753 4.60591 4.65049 4.74376 4.81431 4.90432 4.92109 4.92282 5.01385 5.21012 5.23586 5.27891 5.36187 5.39911 5.51404 5.53115 5.56127 5.60061 5.70784 5.83454 5.95827 6.23582 6.25686 6.31037 6.71961 7.29650 7.75193 8.84455 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014866 B = 0.003153 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.073488 B = 8878.013417 C = 9871.686520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.200 4.200 3 C 0.112 3.888 4 N -0.483 5.483 5 C 0.198 3.802 6 C -0.006 4.006 7 C 0.005 3.995 8 C -0.524 4.524 9 H 0.049 0.951 10 C 0.017 3.983 11 N -0.942 5.942 12 Si 0.936 3.064 13 H -0.260 1.260 14 H -0.283 1.283 15 H -0.265 1.265 16 N -0.326 5.326 17 N -0.361 5.361 18 C 0.424 3.576 19 N -0.524 5.524 20 C 0.057 3.943 21 C 0.159 3.841 22 C -0.200 4.200 23 C -0.101 4.101 24 C -0.130 4.130 25 C -0.106 4.106 26 C -0.091 4.091 27 C -0.163 4.163 28 H 0.105 0.895 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.103 0.897 32 H 0.133 0.867 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.007 0.993 36 H 0.018 0.982 37 H 0.267 0.733 38 H 0.079 0.921 39 H 0.116 0.884 40 H 0.090 0.910 41 H 0.154 0.846 42 H 0.125 0.875 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.154 0.846 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.557 -16.667 -18.044 29.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.219 4.219 3 C -0.009 4.009 4 N -0.181 5.181 5 C -0.072 4.072 6 C -0.046 4.046 7 C -0.033 4.033 8 C -0.562 4.562 9 H 0.067 0.933 10 C -0.181 4.181 11 N -0.582 5.582 12 Si 0.761 3.239 13 H -0.185 1.185 14 H -0.208 1.208 15 H -0.190 1.190 16 N -0.162 5.162 17 N -0.206 5.206 18 C 0.068 3.932 19 N -0.236 5.236 20 C -0.083 4.083 21 C 0.063 3.937 22 C -0.222 4.222 23 C -0.120 4.120 24 C -0.131 4.131 25 C -0.163 4.163 26 C -0.109 4.109 27 C -0.184 4.184 28 H 0.123 0.877 29 H 0.142 0.858 30 H 0.138 0.862 31 H 0.121 0.879 32 H 0.150 0.850 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.026 0.974 36 H 0.036 0.964 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.134 0.866 40 H 0.109 0.891 41 H 0.171 0.829 42 H 0.143 0.857 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.172 0.828 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 17.298 -16.486 -16.947 29.295 hybrid contribution -0.910 0.957 -0.617 1.458 sum 16.388 -15.529 -17.564 28.604 Atomic orbital electron populations 1.24266 0.95335 1.03846 0.94006 1.22949 0.96620 0.96783 1.05550 1.21706 0.92366 0.99022 0.87759 1.46283 1.08698 1.51809 1.11302 1.24990 0.99099 1.01886 0.81229 1.19908 0.86772 0.96324 1.01553 1.19378 0.95658 0.92040 0.96255 1.21270 1.01144 0.93265 1.40491 0.93273 1.25766 0.96722 1.00273 0.95343 1.70024 1.24050 1.15791 1.48339 0.85868 0.80122 0.78473 0.79458 1.18475 1.20820 1.18985 1.73938 0.97426 1.18144 1.26654 1.74116 1.22476 1.25447 0.98609 1.21192 0.82096 0.99242 0.90666 1.42922 1.05056 1.67057 1.08538 1.22705 0.99380 1.03615 0.82617 1.17940 0.80815 0.99461 0.95452 1.22338 0.96690 1.04174 0.99021 1.21082 0.92850 0.98798 0.99224 1.20225 0.97564 1.01944 0.93407 1.20748 0.89897 1.02472 1.03156 1.21115 0.93491 0.98645 0.97663 1.20972 0.94583 1.05823 0.97051 0.87693 0.85758 0.86214 0.87879 0.84961 0.88868 0.89653 0.97444 0.96355 0.92361 0.90302 0.86592 0.89129 0.82899 0.85696 0.90924 0.91591 0.90148 0.82795 0.82893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 14.32 67.78 0.97 -1.29 16 2 C -0.20 -3.58 8.75 25.65 0.22 -3.36 16 3 C 0.11 2.41 5.41 85.63 0.46 2.88 16 4 N -0.48 -14.99 2.79 -518.82 -1.45 -16.43 16 5 C 0.20 7.58 7.32 137.65 1.01 8.59 16 6 C -0.01 -0.23 5.43 29.85 0.16 -0.07 16 7 C 0.01 0.25 4.02 29.85 0.12 0.37 16 8 C -0.52 -29.05 9.66 25.60 0.25 -28.81 16 9 H 0.05 2.92 7.99 -2.91 -0.02 2.90 16 10 C 0.02 0.97 5.47 84.65 0.46 1.43 16 11 N -0.94 -57.46 13.96 21.45 0.30 -57.16 16 12 Si 0.94 44.49 27.47 68.60 1.88 46.37 16 13 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 14 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 15 H -0.27 -12.57 6.54 99.48 0.65 -11.92 16 16 N -0.33 -14.08 12.18 -49.56 -0.60 -14.68 16 17 N -0.36 -14.43 8.46 -57.93 -0.49 -14.92 16 18 C 0.42 13.91 8.23 260.05 2.14 16.05 16 19 N -0.52 -13.08 3.20 -540.51 -1.73 -14.80 16 20 C 0.06 0.79 8.44 127.77 1.08 1.87 16 21 C 0.16 4.09 6.51 38.20 0.25 4.33 16 22 C -0.20 -6.02 9.19 22.40 0.21 -5.81 16 23 C -0.10 -2.50 9.69 22.25 0.22 -2.29 16 24 C -0.13 -2.51 5.88 -19.84 -0.12 -2.62 16 25 C -0.11 -1.38 10.01 71.24 0.71 -0.67 16 26 C -0.09 -1.50 9.69 22.25 0.22 -1.29 16 27 C -0.16 -2.97 9.17 22.40 0.21 -2.76 16 28 H 0.10 1.87 7.84 -2.91 -0.02 1.85 16 29 H 0.12 1.61 8.06 -2.91 -0.02 1.59 16 30 H 0.12 1.99 7.40 -2.91 -0.02 1.97 16 31 H 0.10 2.40 7.68 -2.39 -0.02 2.38 16 32 H 0.13 2.06 4.86 -2.39 -0.01 2.05 16 33 H 0.09 3.26 7.97 -2.39 -0.02 3.24 16 34 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 35 H 0.01 0.37 7.20 -2.39 -0.02 0.35 16 36 H 0.02 0.81 7.57 -2.39 -0.02 0.80 16 37 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 38 H 0.08 0.88 7.49 -2.38 -0.02 0.86 16 39 H 0.12 0.98 6.13 -2.39 -0.01 0.96 16 40 H 0.09 1.14 4.15 -2.39 -0.01 1.13 16 41 H 0.15 5.59 4.48 -23.17 -0.10 5.49 16 42 H 0.13 2.83 8.06 -2.91 -0.02 2.80 16 43 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.07 0.83 8.08 -2.39 -0.02 0.81 16 45 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16 46 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 47 H 0.15 1.73 6.18 -2.91 -0.02 1.71 16 Total: -1.00 -75.71 377.89 7.31 -68.40 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.83 Total: 16.66 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 8.56 Total: -13.43 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -3.97 Total: -118.00 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.37 kcal Total: -75.71 7.31 -68.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340423004.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.249 kcal (2) G-P(sol) polarization free energy of solvation -75.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds