Wall clock time and date at job start Tue Mar 31 2020 15:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46896 * 109.47215 * 50.71022 * 3 2 1 5 5 C 1.46899 * 111.00556 * 73.93560 * 4 3 2 6 6 C 1.47196 * 109.46888 * 293.95480 * 5 4 3 7 7 C 3.01134 * 74.48752 * 89.73802 * 2 1 3 8 8 C 3.89929 * 54.87724 * 92.14554 * 2 1 3 9 9 C 1.38586 * 110.99821 * 197.88921 * 4 3 2 10 10 N 1.31215 * 126.47247 * 298.58592 * 9 4 3 11 11 N 1.28527 * 109.85645 * 180.02562 * 10 9 4 12 12 C 1.30290 * 110.05641 * 359.97438 * 11 10 9 13 13 C 1.50701 * 126.34615 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47244 * 90.02604 * 13 12 11 15 15 C 1.53001 * 109.46976 * 179.97438 * 14 13 12 16 16 C 1.50709 * 109.47111 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99733 * 359.97438 * 16 15 14 18 18 C 1.37869 * 120.00030 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00253 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00035 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46996 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47356 * 119.99606 * 20 18 16 23 23 H 1.48500 * 109.47297 * 240.00032 * 20 18 16 24 24 N 1.36459 * 126.47009 * 118.86953 * 9 4 3 25 25 C 1.46497 * 127.13870 * 0.02562 * 24 9 4 26 26 C 1.50706 * 109.46677 * 265.48199 * 25 24 9 27 27 C 1.30999 * 120.00088 * 118.34642 * 26 25 24 28 28 H 4.40883 * 5.52140 * 180.02562 * 4 1 2 29 29 H 1.08993 * 109.47391 * 290.69988 * 3 2 1 30 30 H 1.09003 * 109.46544 * 170.70379 * 3 2 1 31 31 H 1.09002 * 109.46911 * 53.95361 * 5 4 3 32 32 H 1.09001 * 109.47462 * 173.95321 * 5 4 3 33 33 H 1.09000 * 109.46944 * 220.28778 * 8 7 6 34 34 H 1.08998 * 109.46869 * 340.28905 * 8 7 6 35 35 H 1.09001 * 109.47049 * 100.28648 * 8 7 6 36 36 H 1.09000 * 109.47286 * 330.02304 * 13 12 11 37 37 H 1.08998 * 109.47075 * 210.02503 * 13 12 11 38 38 H 1.09004 * 109.47222 * 299.99552 * 14 13 12 39 39 H 1.08998 * 109.47130 * 60.00192 * 14 13 12 40 40 H 1.09001 * 109.47327 * 299.99304 * 15 14 13 41 41 H 1.09000 * 109.47391 * 59.99800 * 15 14 13 42 42 H 0.97003 * 120.00118 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.47169 * 25.47811 * 25 24 9 44 44 H 1.08996 * 109.47167 * 145.48757 * 25 24 9 45 45 H 1.07997 * 119.99923 * 298.33752 * 26 25 24 46 46 H 1.08000 * 120.00447 * 179.97438 * 27 26 25 47 47 H 1.08006 * 119.99901 * 359.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1361 -0.8761 -1.0719 5 6 2.9535 -0.2508 -2.3885 6 6 1.5155 -0.1189 -2.6739 7 6 0.3686 -0.0133 -2.9016 8 6 -1.0694 0.1194 -3.1871 9 6 4.4626 -1.2197 -0.8649 10 7 5.4823 -0.3957 -0.8098 11 7 6.5661 -1.0555 -0.6050 12 6 6.3044 -2.3288 -0.5175 13 6 7.3037 -3.4319 -0.2819 14 6 7.4559 -3.6697 1.2217 15 6 8.4700 -4.7901 1.4608 16 6 8.6204 -5.0239 2.9420 17 1 8.0501 -4.4323 3.6427 18 6 9.4869 -5.9924 3.4026 19 7 10.1818 -6.7126 2.5493 20 14 9.6738 -6.2817 5.2385 21 1 8.7878 -5.3484 5.9795 22 1 9.2966 -7.6816 5.5601 23 1 11.0851 -6.0456 5.6357 24 7 4.9557 -2.4793 -0.6853 25 6 4.1973 -3.7326 -0.6727 26 6 3.8459 -4.0927 0.7479 27 6 2.5900 -4.1778 1.1107 28 1 -1.0499 0.0000 -0.0003 29 1 3.0095 -0.3624 0.9612 30 1 3.0088 1.0151 -0.1660 31 1 3.4161 0.7362 -2.3892 32 1 3.4204 -0.8713 -3.1534 33 1 -1.6246 -0.6166 -2.6056 34 1 -1.4023 1.1217 -2.9175 35 1 -1.2459 -0.0486 -4.2495 36 1 8.2671 -3.1457 -0.7039 37 1 6.9547 -4.3467 -0.7609 38 1 7.8050 -2.7549 1.7008 39 1 6.4925 -3.9560 1.6436 40 1 8.1205 -5.7048 0.9820 41 1 9.4335 -4.5043 1.0388 42 1 10.7917 -7.3938 2.8734 43 1 3.2829 -3.6098 -1.2531 44 1 4.8014 -4.5274 -1.1101 45 1 4.6295 -4.2808 1.4669 46 1 2.3382 -4.4363 2.1286 47 1 1.8063 -3.9895 0.3917 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340662508.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:24 Heat of formation + Delta-G solvation = 208.037737 kcal Electronic energy + Delta-G solvation = -26849.542113 eV Core-core repulsion = 23230.740337 eV Total energy + Delta-G solvation = -3618.801776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.96712 -38.51113 -36.29505 -34.87670 -34.20870 -33.23305 -32.81401 -32.30878 -30.32365 -29.37943 -27.57483 -26.93405 -26.75294 -25.00028 -23.77792 -21.20624 -21.08739 -20.57826 -19.53169 -18.54791 -17.70955 -17.10707 -16.42898 -16.31721 -16.09568 -15.41729 -15.10585 -14.83270 -14.55225 -14.17072 -14.02510 -13.95744 -13.87676 -13.61096 -13.57100 -13.32385 -12.85488 -12.47725 -12.35877 -12.03136 -11.69311 -11.56410 -11.44543 -11.08715 -10.91199 -10.80611 -10.78786 -10.55894 -10.43335 -10.13446 -10.05578 -9.77590 -9.70725 -9.67938 -9.51015 -9.17686 -9.12704 -8.75442 -8.37988 -6.03108 -4.05277 1.60252 1.74329 2.05204 2.46794 2.65049 2.76197 2.79504 2.98366 3.29408 3.37355 3.41413 3.66901 4.01185 4.17412 4.42925 4.52060 4.56078 4.70279 4.80032 4.94380 5.04976 5.06655 5.17247 5.17665 5.25454 5.27161 5.30778 5.33337 5.36768 5.47846 5.56579 5.70787 5.71221 5.81273 5.88183 5.99558 6.06638 6.22714 6.41210 6.50191 6.57734 6.62707 6.74574 7.01306 7.12942 7.42613 7.44902 7.62650 7.75288 7.96164 8.38322 8.80256 9.01435 9.59130 11.08122 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020450 B = 0.002514 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.843971 B =11136.207097 C =11649.102423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.171 4.171 3 C 0.178 3.822 4 N -0.455 5.455 5 C 0.183 3.817 6 C -0.182 4.182 7 C -0.165 4.165 8 C -0.039 4.039 9 C 0.323 3.677 10 N -0.305 5.305 11 N -0.290 5.290 12 C 0.214 3.786 13 C -0.038 4.038 14 C -0.103 4.103 15 C 0.023 3.977 16 C -0.519 4.519 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.890 3.110 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 N -0.456 5.456 25 C 0.141 3.859 26 C -0.182 4.182 27 C -0.156 4.156 28 H 0.215 0.785 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.017 0.983 41 H 0.020 0.980 42 H 0.260 0.740 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.126 0.874 46 H 0.104 0.896 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.735 10.184 -11.264 27.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.172 4.172 3 C 0.053 3.947 4 N -0.179 5.179 5 C 0.058 3.942 6 C -0.182 4.182 7 C -0.166 4.166 8 C -0.095 4.095 9 C -0.033 4.033 10 N -0.149 5.149 11 N -0.130 5.130 12 C -0.053 4.053 13 C -0.077 4.077 14 C -0.142 4.142 15 C -0.014 4.014 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 N -0.147 5.147 25 C 0.018 3.982 26 C -0.200 4.200 27 C -0.194 4.194 28 H 0.231 0.769 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.035 0.965 41 H 0.039 0.961 42 H 0.070 0.930 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.144 0.856 46 H 0.122 0.878 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -22.068 10.892 -11.311 27.085 hybrid contribution -0.422 -0.878 1.078 1.453 sum -22.490 10.014 -10.234 26.661 Atomic orbital electron populations 1.24661 0.95595 1.00485 1.00018 1.22425 0.93664 1.00428 1.00668 1.18942 0.85444 0.96057 0.94299 1.58277 1.11190 1.45196 1.03251 1.18923 0.87044 0.99528 0.88732 1.21614 0.93476 1.01355 1.01796 1.22222 0.93621 1.01256 0.99529 1.18859 0.85580 1.02797 1.02225 1.21856 0.91087 0.82955 1.07410 1.74566 0.95145 1.26276 1.18946 1.74093 1.18810 1.01226 1.18875 1.25405 0.82331 0.96719 1.00868 1.20408 0.94938 0.91541 1.00855 1.21705 1.00869 1.01409 0.90192 1.19106 0.93433 0.92061 0.96850 1.21240 1.23902 1.18438 0.92171 0.92707 1.25007 0.95724 0.96004 0.97671 1.69966 1.26879 1.22781 1.33749 0.86562 0.77966 0.77938 0.85702 1.19782 1.21044 1.20952 1.46411 1.07968 1.07507 1.52857 1.20960 0.97142 0.83318 0.96732 1.23238 0.98737 1.01480 0.96591 1.23940 0.96037 0.97973 1.01432 0.76852 0.88212 0.90328 0.90367 0.88354 0.90125 0.90298 0.90311 0.88302 0.90267 0.92422 0.93366 0.96457 0.96141 0.93032 0.88004 0.87850 0.85598 0.87776 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.69 17.26 29.55 0.51 -1.18 16 2 C -0.17 -1.84 11.13 -37.12 -0.41 -2.25 16 3 C 0.18 2.02 5.39 -6.61 -0.04 1.98 16 4 N -0.45 -5.37 4.51 -181.18 -0.82 -6.18 16 5 C 0.18 1.96 5.37 -6.61 -0.04 1.93 16 6 C -0.18 -1.93 11.17 -37.12 -0.41 -2.35 16 7 C -0.16 -1.54 12.03 -37.12 -0.45 -1.99 16 8 C -0.04 -0.21 10.28 34.37 0.35 0.15 16 9 C 0.32 4.57 6.29 -318.86 -2.00 2.56 16 10 N -0.30 -5.09 12.19 30.32 0.37 -4.72 16 11 N -0.29 -5.27 12.18 32.99 0.40 -4.87 16 12 C 0.21 3.46 7.32 -154.02 -1.13 2.33 16 13 C -0.04 -0.61 5.59 -27.88 -0.16 -0.76 16 14 C -0.10 -2.02 5.14 -26.73 -0.14 -2.16 16 15 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 16 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 20 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 N -0.46 -6.35 2.79 -115.37 -0.32 -6.67 16 25 C 0.14 1.58 6.42 -5.19 -0.03 1.54 16 26 C -0.18 -2.15 9.85 -36.02 -0.35 -2.51 16 27 C -0.16 -1.60 14.32 29.01 0.42 -1.18 16 28 H 0.21 1.17 7.80 -54.10 -0.42 0.75 16 29 H 0.10 1.19 7.94 -51.93 -0.41 0.78 16 30 H 0.08 0.86 7.91 -51.93 -0.41 0.45 16 31 H 0.08 0.82 7.97 -51.93 -0.41 0.41 16 32 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 37 H 0.08 1.13 7.36 -51.93 -0.38 0.75 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 0.91 6.25 -51.93 -0.32 0.59 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.10 1.01 7.77 -51.93 -0.40 0.61 16 44 H 0.10 1.04 7.39 -51.93 -0.38 0.65 16 45 H 0.13 1.74 6.17 -52.49 -0.32 1.42 16 46 H 0.10 1.00 8.06 -52.49 -0.42 0.58 16 47 H 0.10 0.91 7.84 -52.48 -0.41 0.50 16 LS Contribution 406.46 15.07 6.13 6.13 Total: -1.00 -32.87 406.46 -10.19 -43.05 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -7.23 Total: -0.97 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -4.43 Total: -16.61 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.37 Total: -48.03 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.87 -10.19 -43.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340662508.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 251.092 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 218.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 208.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds