Wall clock time and date at job start Tue Mar 31 2020 15:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46896 * 109.47215 * 50.71022 * 3 2 1 5 5 C 1.46899 * 111.00556 * 73.93560 * 4 3 2 6 6 C 1.47196 * 109.46888 * 293.95480 * 5 4 3 7 7 C 3.01134 * 74.48752 * 89.73802 * 2 1 3 8 8 C 3.89929 * 54.87724 * 92.14554 * 2 1 3 9 9 C 1.38586 * 110.99821 * 197.88921 * 4 3 2 10 10 N 1.31215 * 126.47247 * 298.58592 * 9 4 3 11 11 N 1.28527 * 109.85645 * 180.02562 * 10 9 4 12 12 C 1.30290 * 110.05641 * 359.97438 * 11 10 9 13 13 C 1.50701 * 126.34615 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47244 * 90.02604 * 13 12 11 15 15 C 1.53001 * 109.46976 * 179.97438 * 14 13 12 16 16 C 1.50709 * 109.47111 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99733 * 359.97438 * 16 15 14 18 18 C 1.37869 * 120.00030 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00253 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00035 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46996 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47356 * 119.99606 * 20 18 16 23 23 H 1.48500 * 109.47297 * 240.00032 * 20 18 16 24 24 N 1.36459 * 126.47009 * 118.86953 * 9 4 3 25 25 C 1.46497 * 127.13870 * 0.02562 * 24 9 4 26 26 C 1.50706 * 109.46677 * 265.48199 * 25 24 9 27 27 C 1.30999 * 120.00088 * 118.34642 * 26 25 24 28 28 H 4.40883 * 5.52140 * 180.02562 * 4 1 2 29 29 H 1.08993 * 109.47391 * 290.69988 * 3 2 1 30 30 H 1.09003 * 109.46544 * 170.70379 * 3 2 1 31 31 H 1.09002 * 109.46911 * 53.95361 * 5 4 3 32 32 H 1.09001 * 109.47462 * 173.95321 * 5 4 3 33 33 H 1.09000 * 109.46944 * 220.28778 * 8 7 6 34 34 H 1.08998 * 109.46869 * 340.28905 * 8 7 6 35 35 H 1.09001 * 109.47049 * 100.28648 * 8 7 6 36 36 H 1.09000 * 109.47286 * 330.02304 * 13 12 11 37 37 H 1.08998 * 109.47075 * 210.02503 * 13 12 11 38 38 H 1.09004 * 109.47222 * 299.99552 * 14 13 12 39 39 H 1.08998 * 109.47130 * 60.00192 * 14 13 12 40 40 H 1.09001 * 109.47327 * 299.99304 * 15 14 13 41 41 H 1.09000 * 109.47391 * 59.99800 * 15 14 13 42 42 H 0.97003 * 120.00118 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.47169 * 25.47811 * 25 24 9 44 44 H 1.08996 * 109.47167 * 145.48757 * 25 24 9 45 45 H 1.07997 * 119.99923 * 298.33752 * 26 25 24 46 46 H 1.08000 * 120.00447 * 179.97438 * 27 26 25 47 47 H 1.08006 * 119.99901 * 359.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1361 -0.8761 -1.0719 5 6 2.9535 -0.2508 -2.3885 6 6 1.5155 -0.1189 -2.6739 7 6 0.3686 -0.0133 -2.9016 8 6 -1.0694 0.1194 -3.1871 9 6 4.4626 -1.2197 -0.8649 10 7 5.4823 -0.3957 -0.8098 11 7 6.5661 -1.0555 -0.6050 12 6 6.3044 -2.3288 -0.5175 13 6 7.3037 -3.4319 -0.2819 14 6 7.4559 -3.6697 1.2217 15 6 8.4700 -4.7901 1.4608 16 6 8.6204 -5.0239 2.9420 17 1 8.0501 -4.4323 3.6427 18 6 9.4869 -5.9924 3.4026 19 7 10.1818 -6.7126 2.5493 20 14 9.6738 -6.2817 5.2385 21 1 8.7878 -5.3484 5.9795 22 1 9.2966 -7.6816 5.5601 23 1 11.0851 -6.0456 5.6357 24 7 4.9557 -2.4793 -0.6853 25 6 4.1973 -3.7326 -0.6727 26 6 3.8459 -4.0927 0.7479 27 6 2.5900 -4.1778 1.1107 28 1 -1.0499 0.0000 -0.0003 29 1 3.0095 -0.3624 0.9612 30 1 3.0088 1.0151 -0.1660 31 1 3.4161 0.7362 -2.3892 32 1 3.4204 -0.8713 -3.1534 33 1 -1.6246 -0.6166 -2.6056 34 1 -1.4023 1.1217 -2.9175 35 1 -1.2459 -0.0486 -4.2495 36 1 8.2671 -3.1457 -0.7039 37 1 6.9547 -4.3467 -0.7609 38 1 7.8050 -2.7549 1.7008 39 1 6.4925 -3.9560 1.6436 40 1 8.1205 -5.7048 0.9820 41 1 9.4335 -4.5043 1.0388 42 1 10.7917 -7.3938 2.8734 43 1 3.2829 -3.6098 -1.2531 44 1 4.8014 -4.5274 -1.1101 45 1 4.6295 -4.2808 1.4669 46 1 2.3382 -4.4363 2.1286 47 1 1.8063 -3.9895 0.3917 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340662508.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:23 Heat of formation + Delta-G solvation = 192.907598 kcal Electronic energy + Delta-G solvation = -26850.198205 eV Core-core repulsion = 23230.740337 eV Total energy + Delta-G solvation = -3619.457868 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.16071 -39.43336 -37.38026 -36.46495 -35.00445 -34.42060 -33.99002 -33.61993 -31.53472 -30.34306 -28.86437 -27.96647 -27.75853 -25.92945 -25.55834 -22.61935 -22.17000 -22.02454 -20.64200 -19.30493 -18.71663 -18.41263 -17.94812 -17.47405 -17.06820 -16.56799 -16.32327 -15.96334 -15.85208 -15.54745 -15.27697 -14.72279 -14.58541 -14.35092 -14.24239 -14.20156 -14.11367 -13.85328 -13.63346 -13.38966 -13.28085 -12.81066 -12.71829 -12.63295 -12.47553 -12.42458 -11.93113 -11.73023 -11.52044 -11.43879 -11.30561 -11.22801 -11.14211 -10.80309 -10.60057 -10.53439 -10.39824 -10.09770 -10.04422 -8.18969 -6.28479 0.50299 0.75159 1.20948 1.39164 1.40686 1.52643 1.61072 1.74867 1.81704 1.96124 2.13493 2.41443 2.79385 3.14711 3.30035 3.32405 3.44391 3.59273 3.80747 3.86185 3.89949 4.10396 4.13662 4.20889 4.34026 4.36941 4.44238 4.48694 4.52889 4.67944 4.78095 4.83365 4.87995 4.89097 4.93343 5.03670 5.04892 5.08995 5.11956 5.19274 5.33082 5.42140 5.51677 5.60067 5.65843 5.76445 5.87601 6.05580 6.26877 6.72154 6.74364 6.87470 7.40107 7.57139 8.92557 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020450 B = 0.002514 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.843971 B =11136.207097 C =11649.102423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.213 4.213 3 C 0.182 3.818 4 N -0.448 5.448 5 C 0.187 3.813 6 C -0.223 4.223 7 C -0.150 4.150 8 C -0.044 4.044 9 C 0.340 3.660 10 N -0.333 5.333 11 N -0.322 5.322 12 C 0.208 3.792 13 C -0.026 4.026 14 C -0.085 4.085 15 C 0.028 3.972 16 C -0.540 4.540 17 H 0.053 0.947 18 C 0.003 3.997 19 N -0.928 5.928 20 Si 0.958 3.042 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.280 1.280 24 N -0.451 5.451 25 C 0.139 3.861 26 C -0.203 4.203 27 C -0.136 4.136 28 H 0.249 0.751 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.040 0.960 39 H 0.054 0.946 40 H 0.006 0.994 41 H -0.003 1.003 42 H 0.263 0.737 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.102 0.898 46 H 0.110 0.890 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.082 10.080 -11.280 30.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.214 4.214 3 C 0.056 3.944 4 N -0.173 5.173 5 C 0.061 3.939 6 C -0.224 4.224 7 C -0.151 4.151 8 C -0.100 4.100 9 C -0.017 4.017 10 N -0.177 5.177 11 N -0.163 5.163 12 C -0.060 4.060 13 C -0.066 4.066 14 C -0.124 4.124 15 C -0.009 4.009 16 C -0.578 4.578 17 H 0.072 0.928 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.783 3.217 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.205 1.205 24 N -0.142 5.142 25 C 0.018 3.982 26 C -0.222 4.222 27 C -0.173 4.173 28 H 0.265 0.735 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.024 0.976 41 H 0.016 0.984 42 H 0.072 0.928 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.120 0.880 46 H 0.129 0.871 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -25.430 10.791 -11.332 29.858 hybrid contribution 0.442 -0.818 1.056 1.407 sum -24.988 9.973 -10.275 28.800 Atomic orbital electron populations 1.25471 0.96274 0.98237 0.97833 1.22427 0.93804 1.02501 1.02677 1.18803 0.86573 0.95581 0.93428 1.58506 1.09206 1.45548 1.04023 1.18836 0.87911 0.99128 0.87976 1.21647 0.93806 1.03314 1.03616 1.23129 0.94552 0.99510 0.97933 1.19152 0.83063 1.04266 1.03486 1.22098 0.91605 0.82813 1.05189 1.74499 0.95528 1.27101 1.20576 1.74006 1.20058 1.02269 1.19933 1.25160 0.83275 0.96072 1.01529 1.20191 0.95338 0.92711 0.98327 1.21394 0.99525 0.98671 0.92813 1.18978 0.93564 0.93128 0.95240 1.21655 1.23933 1.18470 0.93733 0.92850 1.25869 0.95407 0.95790 1.02425 1.70076 1.27541 1.23398 1.35867 0.85505 0.78008 0.78143 0.80040 1.19088 1.20145 1.20535 1.46546 1.07325 1.08343 1.51993 1.21197 0.97769 0.82384 0.96809 1.23090 0.98786 1.03781 0.96570 1.24114 0.95685 0.95522 1.02012 0.73463 0.89485 0.90751 0.90915 0.88359 0.88372 0.88723 0.88931 0.88490 0.88055 0.94070 0.92690 0.97568 0.98448 0.92769 0.86271 0.86593 0.87991 0.87138 0.86703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 17.26 74.32 1.28 -1.09 16 2 C -0.21 -4.26 11.13 31.13 0.35 -3.91 16 3 C 0.18 4.12 5.39 84.50 0.46 4.58 16 4 N -0.45 -10.44 4.51 -727.14 -3.28 -13.72 16 5 C 0.19 3.98 5.37 84.50 0.45 4.44 16 6 C -0.22 -4.47 11.17 31.12 0.35 -4.13 16 7 C -0.15 -2.43 12.03 31.13 0.37 -2.05 16 8 C -0.04 -0.31 10.28 70.18 0.72 0.42 16 9 C 0.34 9.68 6.29 260.11 1.64 11.32 16 10 N -0.33 -11.45 12.19 -58.00 -0.71 -12.16 16 11 N -0.32 -12.07 12.18 -49.54 -0.60 -12.67 16 12 C 0.21 6.83 7.32 137.64 1.01 7.84 16 13 C -0.03 -0.85 5.59 29.85 0.17 -0.69 16 14 C -0.09 -3.44 5.14 30.59 0.16 -3.28 16 15 C 0.03 1.42 4.97 29.85 0.15 1.57 16 16 C -0.54 -30.34 9.11 25.60 0.23 -30.10 16 17 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 18 C 0.00 0.18 5.46 84.65 0.46 0.64 16 19 N -0.93 -55.40 13.29 21.44 0.28 -55.12 16 20 Si 0.96 44.17 29.54 68.60 2.03 46.19 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 N -0.45 -12.48 2.79 -518.91 -1.45 -13.93 16 25 C 0.14 2.96 6.42 85.64 0.55 3.51 16 26 C -0.20 -4.64 9.85 25.65 0.25 -4.39 16 27 C -0.14 -2.52 14.32 67.78 0.97 -1.55 16 28 H 0.25 1.53 7.80 -4.42 -0.03 1.50 16 29 H 0.09 2.13 7.94 -2.39 -0.02 2.11 16 30 H 0.07 1.69 7.91 -2.39 -0.02 1.67 16 31 H 0.07 1.59 7.97 -2.39 -0.02 1.57 16 32 H 0.10 2.02 8.05 -2.39 -0.02 2.00 16 33 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 37 H 0.10 2.84 7.36 -2.39 -0.02 2.83 16 38 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.05 2.13 6.25 -2.39 -0.01 2.11 16 40 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 42 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 43 H 0.12 2.12 7.77 -2.39 -0.02 2.11 16 44 H 0.12 2.16 7.39 -2.39 -0.02 2.14 16 45 H 0.10 2.84 6.17 -2.91 -0.02 2.83 16 46 H 0.11 1.91 8.06 -2.91 -0.02 1.89 16 47 H 0.11 1.78 7.84 -2.91 -0.02 1.76 16 Total: -1.00 -72.13 406.46 6.79 -65.34 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.95 Total: 12.95 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: 9.57 Total: -16.89 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -5.75 Total: -107.59 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -72.13 6.79 -65.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340662508.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 258.246 kcal (2) G-P(sol) polarization free energy of solvation -72.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 192.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds