Wall clock time and date at job start Tue Mar 31 2020 14:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00185 * 2 1 4 4 H 1.48498 * 109.47288 * 270.00011 * 3 2 1 5 5 H 1.48497 * 109.47211 * 30.00465 * 3 2 1 6 6 H 1.48497 * 109.47006 * 150.00245 * 3 2 1 7 7 C 1.37883 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00017 * 179.71925 * 7 2 1 9 9 C 1.50696 * 119.99859 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47212 * 179.72302 * 9 7 2 11 11 C 1.50699 * 109.47545 * 175.68009 * 10 9 7 12 12 N 1.30292 * 126.35171 * 93.09637 * 11 10 9 13 13 N 1.28527 * 110.05582 * 179.97438 * 12 11 10 14 14 C 1.31210 * 109.85982 * 0.02562 * 13 12 11 15 15 N 1.38584 * 126.47037 * 180.02562 * 14 13 12 16 16 C 1.48527 * 110.99979 * 265.17380 * 15 14 13 17 17 C 1.54939 * 103.22816 * 159.72068 * 16 15 14 18 18 C 1.54592 * 102.92105 * 322.59126 * 17 16 15 19 19 C 1.47900 * 111.00131 * 22.57442 * 15 14 13 20 20 N 1.36456 * 107.05569 * 359.75622 * 14 13 12 21 21 C 1.46493 * 127.13699 * 180.23678 * 20 14 13 22 22 C 1.50706 * 109.47024 * 82.14513 * 21 20 14 23 23 C 1.38238 * 119.99995 * 275.03832 * 22 21 20 24 24 C 1.38236 * 119.99773 * 179.76106 * 23 22 21 25 25 C 1.38239 * 119.99948 * 0.51291 * 24 23 22 26 26 C 1.38238 * 119.99858 * 359.73854 * 25 24 23 27 27 C 1.38231 * 120.00373 * 0.02562 * 26 25 24 28 28 H 0.96997 * 119.99658 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47062 * 299.72321 * 9 7 2 30 30 H 1.09004 * 109.47445 * 59.72346 * 9 7 2 31 31 H 1.08998 * 109.47312 * 295.67784 * 10 9 7 32 32 H 1.09002 * 109.47241 * 55.67662 * 10 9 7 33 33 H 1.09004 * 110.67465 * 278.15708 * 16 15 14 34 34 H 1.08999 * 110.66725 * 41.28894 * 16 15 14 35 35 H 1.09000 * 110.72774 * 204.23120 * 17 16 15 36 36 H 1.09010 * 110.72253 * 80.94362 * 17 16 15 37 37 H 1.09001 * 110.30678 * 263.03411 * 18 17 16 38 38 H 1.09004 * 110.31338 * 140.86738 * 18 17 16 39 39 H 1.08999 * 109.91819 * 333.50833 * 19 15 14 40 40 H 1.08998 * 109.91612 * 94.80114 * 19 15 14 41 41 H 1.08998 * 109.47530 * 202.14090 * 21 20 14 42 42 H 1.09006 * 109.47784 * 322.14686 * 21 20 14 43 43 H 1.07995 * 119.99810 * 359.97438 * 23 22 21 44 44 H 1.08000 * 119.99534 * 180.22548 * 24 23 22 45 45 H 1.08000 * 119.99534 * 179.72126 * 25 24 23 46 46 H 1.08000 * 119.99713 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.00416 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0051 9 6 1.2510 -2.4991 -0.0017 10 6 2.2451 -3.6621 -0.0091 11 6 1.4951 -4.9649 0.0968 12 7 1.0958 -5.7090 -0.8954 13 7 0.4874 -6.7495 -0.4491 14 6 0.4653 -6.7245 0.8625 15 7 -0.1022 -7.6760 1.6951 16 6 -1.4863 -7.2934 2.0748 17 6 -2.1161 -8.6373 2.5197 18 6 -1.5034 -9.6517 1.5270 19 6 -0.2186 -8.9803 1.0075 20 7 1.1120 -5.5878 1.2522 21 6 1.3449 -5.1288 2.6237 22 6 2.5517 -5.8314 3.1905 23 6 2.4160 -7.0785 3.7712 24 6 3.5238 -7.7251 4.2866 25 6 4.7654 -7.1199 4.2309 26 6 4.9002 -5.8706 3.6548 27 6 3.7933 -5.2261 3.1350 28 1 -0.4849 0.8401 -0.0004 29 1 0.6277 -2.5596 0.8905 30 1 0.6209 -2.5542 -0.8895 31 1 2.8162 -3.6461 -0.9374 32 1 2.9249 -3.5644 0.8374 33 1 -1.4760 -6.5815 2.9001 34 1 -2.0207 -6.8831 1.2180 35 1 -3.2011 -8.6067 2.4195 36 1 -1.8288 -8.8778 3.5434 37 1 -2.1924 -9.8383 0.7033 38 1 -1.2629 -10.5837 2.0386 39 1 -0.2889 -8.8273 -0.0694 40 1 0.6458 -9.6017 1.2414 41 1 1.5185 -4.0527 2.6222 42 1 0.4719 -5.3551 3.2359 43 1 1.4452 -7.5491 3.8190 44 1 3.4183 -8.7010 4.7370 45 1 5.6301 -7.6232 4.6377 46 1 5.8701 -5.3976 3.6117 47 1 3.8985 -4.2498 2.6853 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342072966.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:15 Heat of formation + Delta-G solvation = 104.326999 kcal Electronic energy + Delta-G solvation = -28003.341883 eV Core-core repulsion = 24380.042873 eV Total energy + Delta-G solvation = -3623.299011 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.62286 -39.25310 -38.90776 -35.17960 -34.11956 -32.56700 -31.56342 -30.96628 -30.86925 -29.12910 -28.08830 -26.57931 -25.21985 -23.01391 -22.59107 -22.06983 -21.54621 -21.14036 -20.17405 -19.80402 -17.51528 -16.86698 -16.47548 -16.14230 -15.88537 -15.68641 -15.13516 -14.99394 -14.53020 -14.07763 -13.73996 -13.52230 -13.36462 -13.29223 -13.09555 -12.74415 -12.64558 -12.52311 -12.37346 -12.08529 -11.62818 -11.46058 -11.45728 -11.31937 -11.09104 -11.04315 -10.96642 -10.75687 -10.66522 -10.36454 -10.03078 -9.89457 -9.74342 -9.26273 -9.07275 -8.95163 -8.90158 -8.43459 -8.09146 -6.07945 -4.12260 1.15553 1.37494 2.12105 2.61659 3.27175 3.28292 3.35056 3.37279 3.67708 3.96414 4.37557 4.39365 4.51419 4.60219 4.66201 4.79034 4.92886 4.99528 5.07339 5.08656 5.15620 5.26546 5.28214 5.32985 5.43193 5.44948 5.53334 5.54626 5.59967 5.62334 5.75427 5.81031 5.85195 5.90685 5.99963 6.07325 6.27493 6.30274 6.39839 6.43443 6.45709 6.54214 6.60112 6.66725 6.92465 6.96045 7.46444 7.52035 7.66213 7.89291 8.26752 8.93856 9.19907 9.52677 11.03088 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010682 B = 0.004022 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.552610 B = 6959.722254 C = 8693.844711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.032 4.032 11 C 0.218 3.782 12 N -0.298 5.298 13 N -0.321 5.321 14 C 0.326 3.674 15 N -0.438 5.438 16 C 0.038 3.962 17 C -0.119 4.119 18 C -0.129 4.129 19 C 0.045 3.955 20 N -0.463 5.463 21 C 0.153 3.847 22 C -0.110 4.110 23 C -0.086 4.086 24 C -0.129 4.129 25 C -0.114 4.114 26 C -0.125 4.125 27 C -0.096 4.096 28 H 0.262 0.738 29 H 0.013 0.987 30 H 0.025 0.975 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.113 0.887 42 H 0.097 0.903 43 H 0.131 0.869 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.123 0.877 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.641 -18.230 11.587 21.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.006 4.006 10 C -0.072 4.072 11 C -0.049 4.049 12 N -0.137 5.137 13 N -0.165 5.165 14 C -0.031 4.031 15 N -0.163 5.163 16 C -0.089 4.089 17 C -0.158 4.158 18 C -0.167 4.167 19 C -0.082 4.082 20 N -0.156 5.156 21 C 0.030 3.970 22 C -0.111 4.111 23 C -0.105 4.105 24 C -0.147 4.147 25 C -0.132 4.132 26 C -0.143 4.143 27 C -0.114 4.114 28 H 0.071 0.929 29 H 0.032 0.968 30 H 0.044 0.956 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.131 0.869 42 H 0.115 0.885 43 H 0.149 0.851 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.141 0.859 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.580 -18.623 10.620 21.497 hybrid contribution 0.193 1.450 0.707 1.625 sum 1.773 -17.173 11.327 20.648 Atomic orbital electron populations 1.69972 1.06124 1.26806 1.50132 1.25003 0.94816 0.99308 0.95022 0.86568 0.79775 0.83268 0.78262 1.20525 1.21230 1.19776 1.21135 0.93079 0.90504 1.51564 0.92278 1.19076 0.93553 0.90142 0.97870 1.20462 0.97731 0.86095 1.02915 1.25576 1.00584 0.98398 0.80391 1.74009 1.14166 1.00625 1.24878 1.74388 1.19588 1.17365 1.05181 1.22410 1.01296 0.89327 0.90091 1.61530 1.19049 1.00563 1.35200 1.23369 0.86466 0.98294 1.00777 1.22466 0.99993 0.93550 0.99760 1.22407 0.96388 0.98769 0.99152 1.22856 0.98471 0.87658 0.99253 1.46224 1.42781 1.18488 1.08084 1.20711 0.96799 1.00357 0.79100 1.19924 0.94603 0.96052 1.00527 1.21194 0.99470 0.93760 0.96057 1.21120 0.92816 0.99947 1.00801 1.21195 0.97437 0.95464 0.99131 1.21136 0.98659 0.95466 0.99053 1.21245 0.91971 1.00235 0.97974 0.92858 0.96821 0.95639 0.89318 0.91217 0.89668 0.92370 0.90463 0.90455 0.90978 0.90706 0.90330 0.90010 0.86913 0.88469 0.85064 0.86187 0.86270 0.85902 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.52 -14.11 9.11 -34.44 -0.31 -14.42 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.03 0.80 4.95 -27.89 -0.14 0.66 16 10 C -0.03 -0.66 5.25 -27.88 -0.15 -0.80 16 11 C 0.22 4.40 7.32 -154.02 -1.13 3.27 16 12 N -0.30 -6.57 12.18 32.99 0.40 -6.17 16 13 N -0.32 -6.48 10.78 30.31 0.33 -6.16 16 14 C 0.33 5.56 6.84 -318.87 -2.18 3.38 16 15 N -0.44 -5.72 4.81 -170.56 -0.82 -6.54 16 16 C 0.04 0.43 6.50 -1.90 -0.01 0.42 16 17 C -0.12 -0.97 7.06 -24.87 -0.18 -1.15 16 18 C -0.13 -1.08 6.93 -25.38 -0.18 -1.26 16 19 C 0.04 0.52 6.61 -2.76 -0.02 0.50 16 20 N -0.46 -7.99 2.79 -115.37 -0.32 -8.31 16 21 C 0.15 2.17 6.15 -5.19 -0.03 2.14 16 22 C -0.11 -1.45 5.46 -104.62 -0.57 -2.02 16 23 C -0.09 -1.02 9.72 -39.58 -0.38 -1.41 16 24 C -0.13 -1.37 10.05 -39.58 -0.40 -1.76 16 25 C -0.11 -1.19 10.05 -39.58 -0.40 -1.58 16 26 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 27 C -0.10 -1.24 9.68 -39.58 -0.38 -1.62 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 32 H 0.07 1.28 7.09 -51.93 -0.37 0.91 16 33 H 0.08 0.90 7.86 -51.93 -0.41 0.49 16 34 H 0.06 0.77 7.99 -51.93 -0.42 0.35 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 1.09 6.74 -51.93 -0.35 0.74 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.11 1.67 7.48 -51.93 -0.39 1.28 16 42 H 0.10 1.20 7.84 -51.93 -0.41 0.79 16 43 H 0.13 1.47 7.55 -52.49 -0.40 1.07 16 44 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 46 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 47 H 0.13 1.65 7.30 -52.49 -0.38 1.26 16 LS Contribution 387.10 15.07 5.83 5.83 Total: -1.00 -32.45 387.10 -13.12 -45.57 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.31 Total: 1.15 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -6.95 Total: -15.90 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.32 Total: -52.61 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.45 -13.12 -45.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342072966.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.901 kcal (2) G-P(sol) polarization free energy of solvation -32.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds