Wall clock time and date at job start Tue Mar 31 2020 14:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00185 * 2 1 4 4 H 1.48498 * 109.47288 * 270.00011 * 3 2 1 5 5 H 1.48497 * 109.47211 * 30.00465 * 3 2 1 6 6 H 1.48497 * 109.47006 * 150.00245 * 3 2 1 7 7 C 1.37883 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00017 * 179.71925 * 7 2 1 9 9 C 1.50696 * 119.99859 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47212 * 179.72302 * 9 7 2 11 11 C 1.50699 * 109.47545 * 175.68009 * 10 9 7 12 12 N 1.30292 * 126.35171 * 93.09637 * 11 10 9 13 13 N 1.28527 * 110.05582 * 179.97438 * 12 11 10 14 14 C 1.31210 * 109.85982 * 0.02562 * 13 12 11 15 15 N 1.38584 * 126.47037 * 180.02562 * 14 13 12 16 16 C 1.48527 * 110.99979 * 265.17380 * 15 14 13 17 17 C 1.54939 * 103.22816 * 159.72068 * 16 15 14 18 18 C 1.54592 * 102.92105 * 322.59126 * 17 16 15 19 19 C 1.47900 * 111.00131 * 22.57442 * 15 14 13 20 20 N 1.36456 * 107.05569 * 359.75622 * 14 13 12 21 21 C 1.46493 * 127.13699 * 180.23678 * 20 14 13 22 22 C 1.50706 * 109.47024 * 82.14513 * 21 20 14 23 23 C 1.38238 * 119.99995 * 275.03832 * 22 21 20 24 24 C 1.38236 * 119.99773 * 179.76106 * 23 22 21 25 25 C 1.38239 * 119.99948 * 0.51291 * 24 23 22 26 26 C 1.38238 * 119.99858 * 359.73854 * 25 24 23 27 27 C 1.38231 * 120.00373 * 0.02562 * 26 25 24 28 28 H 0.96997 * 119.99658 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47062 * 299.72321 * 9 7 2 30 30 H 1.09004 * 109.47445 * 59.72346 * 9 7 2 31 31 H 1.08998 * 109.47312 * 295.67784 * 10 9 7 32 32 H 1.09002 * 109.47241 * 55.67662 * 10 9 7 33 33 H 1.09004 * 110.67465 * 278.15708 * 16 15 14 34 34 H 1.08999 * 110.66725 * 41.28894 * 16 15 14 35 35 H 1.09000 * 110.72774 * 204.23120 * 17 16 15 36 36 H 1.09010 * 110.72253 * 80.94362 * 17 16 15 37 37 H 1.09001 * 110.30678 * 263.03411 * 18 17 16 38 38 H 1.09004 * 110.31338 * 140.86738 * 18 17 16 39 39 H 1.08999 * 109.91819 * 333.50833 * 19 15 14 40 40 H 1.08998 * 109.91612 * 94.80114 * 19 15 14 41 41 H 1.08998 * 109.47530 * 202.14090 * 21 20 14 42 42 H 1.09006 * 109.47784 * 322.14686 * 21 20 14 43 43 H 1.07995 * 119.99810 * 359.97438 * 23 22 21 44 44 H 1.08000 * 119.99534 * 180.22548 * 24 23 22 45 45 H 1.08000 * 119.99534 * 179.72126 * 25 24 23 46 46 H 1.08000 * 119.99713 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.00416 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0051 9 6 1.2510 -2.4991 -0.0017 10 6 2.2451 -3.6621 -0.0091 11 6 1.4951 -4.9649 0.0968 12 7 1.0958 -5.7090 -0.8954 13 7 0.4874 -6.7495 -0.4491 14 6 0.4653 -6.7245 0.8625 15 7 -0.1022 -7.6760 1.6951 16 6 -1.4863 -7.2934 2.0748 17 6 -2.1161 -8.6373 2.5197 18 6 -1.5034 -9.6517 1.5270 19 6 -0.2186 -8.9803 1.0075 20 7 1.1120 -5.5878 1.2522 21 6 1.3449 -5.1288 2.6237 22 6 2.5517 -5.8314 3.1905 23 6 2.4160 -7.0785 3.7712 24 6 3.5238 -7.7251 4.2866 25 6 4.7654 -7.1199 4.2309 26 6 4.9002 -5.8706 3.6548 27 6 3.7933 -5.2261 3.1350 28 1 -0.4849 0.8401 -0.0004 29 1 0.6277 -2.5596 0.8905 30 1 0.6209 -2.5542 -0.8895 31 1 2.8162 -3.6461 -0.9374 32 1 2.9249 -3.5644 0.8374 33 1 -1.4760 -6.5815 2.9001 34 1 -2.0207 -6.8831 1.2180 35 1 -3.2011 -8.6067 2.4195 36 1 -1.8288 -8.8778 3.5434 37 1 -2.1924 -9.8383 0.7033 38 1 -1.2629 -10.5837 2.0386 39 1 -0.2889 -8.8273 -0.0694 40 1 0.6458 -9.6017 1.2414 41 1 1.5185 -4.0527 2.6222 42 1 0.4719 -5.3551 3.2359 43 1 1.4452 -7.5491 3.8190 44 1 3.4183 -8.7010 4.7370 45 1 5.6301 -7.6232 4.6377 46 1 5.8701 -5.3976 3.6117 47 1 3.8985 -4.2498 2.6853 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342072966.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:14 Heat of formation + Delta-G solvation = 89.462622 kcal Electronic energy + Delta-G solvation = -28003.986451 eV Core-core repulsion = 24380.042873 eV Total energy + Delta-G solvation = -3623.943578 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.07615 -40.16530 -39.89345 -36.57303 -35.89325 -34.09871 -32.88612 -32.15508 -31.79923 -30.04193 -29.65585 -27.71451 -27.08478 -24.12663 -23.85391 -23.38292 -22.69973 -22.06958 -21.39795 -21.19542 -18.76419 -18.44118 -17.88048 -17.34064 -16.99437 -16.77521 -16.49273 -16.09915 -15.97906 -15.24487 -15.09454 -15.02567 -14.37658 -14.33192 -14.26075 -14.13508 -13.72137 -13.65211 -13.47552 -13.37229 -13.09049 -12.88225 -12.73917 -12.52210 -12.34524 -12.28073 -12.17895 -12.12187 -11.86459 -11.79928 -11.60913 -11.44872 -11.32006 -11.11560 -10.58399 -10.45324 -9.83589 -9.80633 -9.49844 -8.21266 -6.33682 0.21323 0.49721 0.71597 1.34548 1.42931 1.44340 1.54896 1.73040 2.41334 2.65906 2.94245 3.13229 3.38794 3.54469 3.57171 3.63641 3.73371 3.92829 4.03483 4.12175 4.16832 4.24518 4.26484 4.28681 4.35577 4.48536 4.57868 4.60008 4.63495 4.66776 4.77819 4.84957 4.87400 4.93717 4.97486 5.02271 5.06480 5.12439 5.17068 5.25324 5.41341 5.47791 5.53314 5.55729 5.58624 5.59938 5.63841 5.76678 6.07744 6.12791 6.17160 6.81581 7.36515 7.68238 8.90828 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010682 B = 0.004022 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.552610 B = 6959.722254 C = 8693.844711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.966 3.034 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.256 1.256 7 C -0.539 4.539 8 H 0.072 0.928 9 C 0.045 3.955 10 C -0.015 4.015 11 C 0.201 3.799 12 N -0.333 5.333 13 N -0.355 5.355 14 C 0.344 3.656 15 N -0.429 5.429 16 C 0.032 3.968 17 C -0.107 4.107 18 C -0.120 4.120 19 C 0.039 3.961 20 N -0.459 5.459 21 C 0.151 3.849 22 C -0.125 4.125 23 C -0.092 4.092 24 C -0.129 4.129 25 C -0.112 4.112 26 C -0.132 4.132 27 C -0.116 4.116 28 H 0.263 0.737 29 H -0.005 1.005 30 H -0.017 1.017 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.032 0.968 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.050 0.950 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.115 0.885 43 H 0.138 0.862 44 H 0.147 0.853 45 H 0.148 0.852 46 H 0.140 0.860 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.806 -19.814 14.107 24.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.194 4.194 3 Si 0.791 3.209 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.180 1.180 7 C -0.577 4.577 8 H 0.090 0.910 9 C 0.007 3.993 10 C -0.055 4.055 11 C -0.068 4.068 12 N -0.172 5.172 13 N -0.199 5.199 14 C -0.013 4.013 15 N -0.155 5.155 16 C -0.095 4.095 17 C -0.145 4.145 18 C -0.158 4.158 19 C -0.088 4.088 20 N -0.151 5.151 21 C 0.030 3.970 22 C -0.126 4.126 23 C -0.110 4.110 24 C -0.147 4.147 25 C -0.130 4.130 26 C -0.150 4.150 27 C -0.135 4.135 28 H 0.072 0.928 29 H 0.013 0.987 30 H 0.001 0.999 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.051 0.949 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.119 0.881 39 H 0.069 0.931 40 H 0.108 0.892 41 H 0.118 0.882 42 H 0.133 0.867 43 H 0.156 0.844 44 H 0.165 0.835 45 H 0.166 0.834 46 H 0.158 0.842 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.755 -20.223 13.157 24.283 hybrid contribution -0.197 1.838 -0.017 1.849 sum 2.559 -18.385 13.140 22.742 Atomic orbital electron populations 1.70121 1.08024 1.27851 1.51344 1.25961 0.95625 1.03385 0.94460 0.85424 0.78881 0.78236 0.78396 1.20183 1.20968 1.17990 1.21566 0.93881 0.91239 1.50976 0.90969 1.18827 0.93657 0.91981 0.94877 1.20151 0.96731 0.84778 1.03793 1.25333 1.01498 0.98524 0.81401 1.73895 1.15160 1.01705 1.26440 1.74318 1.21041 1.17510 1.07021 1.22866 0.99489 0.89199 0.89759 1.61771 1.19872 1.00124 1.33711 1.23511 0.85233 1.00712 1.00054 1.22484 1.00668 0.90825 1.00526 1.22407 0.94495 0.99471 0.99463 1.22981 1.00872 0.87160 0.97749 1.46373 1.42036 1.18194 1.08516 1.20891 0.98513 0.99882 0.77738 1.19850 0.94004 0.96942 1.01779 1.21322 1.00431 0.93235 0.96044 1.21474 0.92345 1.00872 0.99964 1.21578 0.98466 0.94944 0.98021 1.21403 0.98833 0.96033 0.98690 1.21330 0.92704 1.00380 0.99039 0.92786 0.98672 0.99861 0.89479 0.89012 0.88809 0.94934 0.88850 0.88459 0.90740 0.88106 0.93099 0.89157 0.88155 0.86700 0.84450 0.83482 0.83420 0.84238 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.40 13.29 21.45 0.28 -56.12 16 2 C 0.00 0.22 5.46 84.66 0.46 0.68 16 3 Si 0.97 43.14 29.54 68.60 2.03 45.17 16 4 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.54 -29.55 9.11 25.60 0.23 -29.32 16 8 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 9 C 0.04 2.37 4.95 29.85 0.15 2.51 16 10 C -0.01 -0.63 5.25 29.85 0.16 -0.48 16 11 C 0.20 8.53 7.32 137.64 1.01 9.54 16 12 N -0.33 -15.48 12.18 -49.54 -0.60 -16.08 16 13 N -0.36 -14.99 10.78 -58.00 -0.63 -15.61 16 14 C 0.34 12.02 6.84 260.11 1.78 13.80 16 15 N -0.43 -10.89 4.81 -693.52 -3.33 -14.22 16 16 C 0.03 0.68 6.50 86.65 0.56 1.25 16 17 C -0.11 -1.42 7.06 31.80 0.22 -1.20 16 18 C -0.12 -1.70 6.93 31.47 0.22 -1.48 16 19 C 0.04 0.87 6.61 86.45 0.57 1.45 16 20 N -0.46 -16.31 2.79 -518.91 -1.45 -17.76 16 21 C 0.15 4.34 6.15 85.64 0.53 4.87 16 22 C -0.12 -3.21 5.46 -19.86 -0.11 -3.31 16 23 C -0.09 -2.00 9.72 22.27 0.22 -1.78 16 24 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 25 C -0.11 -1.99 10.05 22.27 0.22 -1.77 16 26 C -0.13 -2.75 10.05 22.27 0.22 -2.52 16 27 C -0.12 -2.94 9.68 22.27 0.22 -2.72 16 28 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 29 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 30 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 31 H 0.09 3.70 8.14 -2.39 -0.02 3.68 16 32 H 0.09 3.45 7.09 -2.39 -0.02 3.43 16 33 H 0.09 1.85 7.86 -2.38 -0.02 1.83 16 34 H 0.03 0.87 7.99 -2.39 -0.02 0.86 16 35 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.05 1.44 6.74 -2.39 -0.02 1.42 16 40 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.10 3.11 7.48 -2.39 -0.02 3.09 16 42 H 0.11 2.80 7.84 -2.38 -0.02 2.79 16 43 H 0.14 2.75 7.55 -2.91 -0.02 2.73 16 44 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 45 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 46 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 47 H 0.12 3.12 7.30 -2.91 -0.02 3.10 16 Total: -1.00 -73.47 387.10 4.14 -69.33 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.95 Total: 17.91 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 6.89 Total: -12.62 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -5.73 Total: -119.79 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -73.47 4.14 -69.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342072966.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.792 kcal (2) G-P(sol) polarization free energy of solvation -73.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds