Wall clock time and date at job start Tue Mar 31 2020 15:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50712 * 120.00100 * 2 1 4 4 C 1.50698 * 120.00299 * 179.97438 * 2 1 3 5 5 N 1.46501 * 109.47270 * 95.53321 * 4 2 1 6 6 C 1.36694 * 127.13332 * 275.20848 * 5 4 2 7 7 C 1.50695 * 126.34585 * 359.94803 * 6 5 4 8 8 C 1.53000 * 109.47390 * 270.03233 * 7 6 5 9 9 C 1.50695 * 109.47390 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00330 * 359.97438 * 9 8 7 11 11 C 1.37883 * 120.00042 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99839 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99933 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47059 * 60.00493 * 13 11 9 15 15 H 1.48499 * 109.47099 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47291 * 300.00666 * 13 11 9 17 17 N 1.30322 * 107.31079 * 179.97438 * 6 5 4 18 18 N 1.28526 * 110.05061 * 359.97438 * 17 6 5 19 19 C 1.31221 * 109.85582 * 0.02562 * 18 17 6 20 20 N 1.38669 * 126.47379 * 179.73816 * 19 18 17 21 21 C 1.46501 * 120.00090 * 84.47642 * 20 19 18 22 22 C 1.39760 * 120.00099 * 264.47979 * 20 19 18 23 23 C 1.38919 * 120.07025 * 5.20645 * 22 20 19 24 24 C 1.38099 * 119.91944 * 179.79300 * 23 22 20 25 25 C 1.38292 * 120.07739 * 0.48439 * 24 23 22 26 26 C 1.38289 * 120.14948 * 359.74952 * 25 24 23 27 27 C 1.38101 * 120.07400 * 0.02562 * 26 25 24 28 28 H 1.08000 * 120.00103 * 180.02562 * 1 2 3 29 29 H 1.08007 * 119.99453 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.46656 * 264.97933 * 3 2 1 31 31 H 1.08996 * 109.46536 * 24.97475 * 3 2 1 32 32 H 1.08997 * 109.47296 * 144.97695 * 3 2 1 33 33 H 1.09007 * 109.46697 * 335.53619 * 4 2 1 34 34 H 1.08998 * 109.47295 * 215.53976 * 4 2 1 35 35 H 1.08997 * 109.47288 * 30.03612 * 7 6 5 36 36 H 1.09001 * 109.47391 * 150.03556 * 7 6 5 37 37 H 1.09004 * 109.47037 * 300.00110 * 8 7 6 38 38 H 1.09004 * 109.47061 * 59.99696 * 8 7 6 39 39 H 0.97005 * 119.99872 * 179.97438 * 12 11 9 40 40 H 1.08999 * 109.46764 * 95.38287 * 21 20 19 41 41 H 1.08999 * 109.47257 * 215.38137 * 21 20 19 42 42 H 1.08997 * 109.47231 * 335.38648 * 21 20 19 43 43 H 1.07996 * 120.04309 * 0.03168 * 23 22 20 44 44 H 1.08002 * 119.96275 * 180.23449 * 24 23 22 45 45 H 1.08004 * 119.92492 * 179.72420 * 25 24 23 46 46 H 1.08001 * 119.96350 * 179.97438 * 26 25 24 47 47 H 1.08002 * 120.03532 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 6 2.0635 -1.3050 0.0006 5 7 2.4231 -1.6620 -1.3740 6 6 1.6462 -2.3209 -2.2856 7 6 0.2431 -2.8244 -2.0651 8 6 0.2936 -4.2554 -1.5260 9 6 -1.1095 -4.7588 -1.3050 10 1 -1.9530 -4.1216 -1.5264 11 6 -1.3166 -6.0328 -0.8200 12 7 -0.2895 -6.8085 -0.5499 13 14 -3.0558 -6.6564 -0.5453 14 1 -3.7975 -6.6374 -1.8318 15 1 -3.0068 -8.0453 -0.0222 16 1 -3.7459 -5.7821 0.4367 17 7 2.3441 -2.4335 -3.3804 18 7 3.5000 -1.8939 -3.2236 19 6 3.6027 -1.4048 -2.0103 20 7 4.7038 -0.7544 -1.4742 21 6 4.8906 0.6804 -1.7037 22 6 5.6355 -1.4677 -0.7149 23 6 5.5195 -2.8460 -0.5862 24 6 6.4443 -3.5483 0.1613 25 6 7.4791 -2.8798 0.7895 26 6 7.5947 -1.5071 0.6674 27 6 6.6761 -0.7992 -0.0824 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5399 0.9354 0.0004 30 1 2.3231 1.5748 -1.0238 31 1 1.4384 2.0855 0.4339 32 1 2.9740 1.1991 0.5898 33 1 1.4351 -2.0872 0.4265 34 1 2.9694 -1.2013 0.5979 35 1 -0.2643 -2.1826 -1.3450 36 1 -0.3004 -2.8111 -3.0099 37 1 0.8010 -4.8973 -2.2462 38 1 0.8371 -4.2688 -0.5812 39 1 -0.4351 -7.7047 -0.2084 40 1 4.4840 1.2391 -0.8607 41 1 5.9542 0.8969 -1.8041 42 1 4.3725 0.9727 -2.6171 43 1 4.7093 -3.3683 -1.0732 44 1 6.3569 -4.6203 0.2588 45 1 8.1985 -3.4309 1.3771 46 1 8.4039 -0.9880 1.1596 47 1 6.7667 0.2728 -0.1770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342091314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:21 Heat of formation + Delta-G solvation = 114.123284 kcal Electronic energy + Delta-G solvation = -28109.044418 eV Core-core repulsion = 24486.170206 eV Total energy + Delta-G solvation = -3622.874212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.13418 -40.55709 -38.03896 -37.41552 -36.00468 -34.51651 -33.68973 -32.02874 -31.16874 -30.30095 -28.52152 -28.35416 -27.31713 -26.91464 -24.08924 -23.79672 -23.06077 -21.86022 -21.57010 -19.83092 -19.12659 -18.61521 -17.89764 -17.45573 -17.02392 -16.61729 -16.44667 -15.91085 -15.69798 -15.32952 -15.12951 -15.06238 -14.89358 -14.87801 -14.40316 -14.27150 -14.09979 -13.63454 -13.37716 -13.19426 -13.06063 -12.98481 -12.86561 -12.74002 -12.55326 -12.45462 -12.44041 -12.10132 -11.94823 -11.82453 -11.66461 -11.35570 -11.11719 -10.99035 -10.58691 -10.28068 -10.09851 -9.92504 -8.65799 -8.22056 -6.35207 0.42740 0.47568 0.58922 0.75087 1.33397 1.41936 1.45357 1.52865 1.67560 2.12501 2.40708 2.88381 3.12203 3.39336 3.46859 3.58628 3.75064 3.89583 3.97971 4.06933 4.11648 4.28555 4.30246 4.43790 4.49156 4.53580 4.53866 4.57884 4.61706 4.65141 4.71004 4.73282 4.76684 4.77890 4.90878 4.95797 5.04711 5.07946 5.23393 5.38980 5.47262 5.49911 5.53545 5.57295 5.65287 5.71258 5.75018 5.86692 6.12368 6.24618 6.33054 6.80032 7.35211 7.62489 8.89886 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012239 B = 0.003784 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.239024 B = 7398.361222 C = 8429.974149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.166 4.166 3 C -0.108 4.108 4 C 0.141 3.859 5 N -0.466 5.466 6 C 0.210 3.790 7 C -0.019 4.019 8 C 0.045 3.955 9 C -0.540 4.540 10 H 0.074 0.926 11 C 0.003 3.997 12 N -0.934 5.934 13 Si 0.968 3.032 14 H -0.267 1.267 15 H -0.287 1.287 16 H -0.260 1.260 17 N -0.331 5.331 18 N -0.324 5.324 19 C 0.402 3.598 20 N -0.542 5.542 21 C 0.093 3.907 22 C 0.192 3.808 23 C -0.204 4.204 24 C -0.090 4.090 25 C -0.164 4.164 26 C -0.071 4.071 27 C -0.170 4.170 28 H 0.095 0.905 29 H 0.131 0.869 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.090 0.910 37 H -0.018 1.018 38 H -0.010 1.010 39 H 0.263 0.737 40 H 0.081 0.919 41 H 0.102 0.898 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.119 0.881 45 H 0.145 0.855 46 H 0.163 0.837 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.418 20.351 7.464 24.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.167 4.167 3 C -0.164 4.164 4 C 0.019 3.981 5 N -0.159 5.159 6 C -0.059 4.059 7 C -0.059 4.059 8 C 0.007 3.993 9 C -0.578 4.578 10 H 0.092 0.908 11 C -0.195 4.195 12 N -0.574 5.574 13 Si 0.792 3.208 14 H -0.192 1.192 15 H -0.213 1.213 16 H -0.184 1.184 17 N -0.171 5.171 18 N -0.166 5.166 19 C 0.046 3.954 20 N -0.255 5.255 21 C -0.047 4.047 22 C 0.094 3.906 23 C -0.226 4.226 24 C -0.109 4.109 25 C -0.183 4.183 26 C -0.089 4.089 27 C -0.192 4.192 28 H 0.113 0.887 29 H 0.149 0.851 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.000 1.000 38 H 0.009 0.991 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.121 0.879 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.138 0.862 45 H 0.163 0.837 46 H 0.181 0.819 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 12.790 19.958 6.036 24.461 hybrid contribution -1.286 -1.173 0.969 1.992 sum 11.504 18.785 7.005 23.115 Atomic orbital electron populations 1.24222 0.95077 1.03539 0.96163 1.21858 0.95844 0.94851 1.04102 1.20894 1.00534 0.92951 1.02032 1.21022 1.01788 0.96813 0.78434 1.47033 1.12473 1.42689 1.13745 1.25275 0.97914 0.96530 0.86138 1.20265 0.84765 0.97560 1.03265 1.18812 0.96611 0.90066 0.93847 1.21528 0.92793 0.99770 1.43682 0.90788 1.25997 1.01565 0.97065 0.94911 1.70125 1.32671 1.09166 1.45431 0.85457 0.79064 0.77227 0.79068 1.19160 1.21316 1.18424 1.74087 1.00081 1.20228 1.22736 1.74424 1.12868 1.14003 1.15337 1.20596 0.84572 1.01153 0.89052 1.42579 1.18457 1.08880 1.55627 1.22150 1.04507 0.75774 1.02278 1.18011 0.90200 0.90327 0.92036 1.20639 1.02363 0.93593 1.06040 1.21077 0.94166 1.00017 0.95611 1.21316 0.99078 0.95550 1.02398 1.21370 0.97965 0.93664 0.95882 1.20986 0.95257 1.01396 1.01520 0.88673 0.85106 0.92056 0.89545 0.90788 0.89166 0.87727 0.88520 0.89203 0.99995 0.99142 0.92792 0.90095 0.87913 0.91715 0.91098 0.86249 0.83714 0.81946 0.82387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 13.37 67.78 0.91 -2.33 16 2 C -0.17 -3.63 5.64 -16.48 -0.09 -3.73 16 3 C -0.11 -1.66 9.18 71.24 0.65 -1.00 16 4 C 0.14 3.98 6.01 85.63 0.51 4.49 16 5 N -0.47 -16.31 2.79 -518.82 -1.45 -17.76 16 6 C 0.21 8.80 7.32 137.64 1.01 9.81 16 7 C -0.02 -0.80 5.46 29.85 0.16 -0.64 16 8 C 0.04 2.40 4.95 29.85 0.15 2.55 16 9 C -0.54 -29.79 9.11 25.60 0.23 -29.56 16 10 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 11 C 0.00 0.16 5.46 84.66 0.46 0.62 16 12 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 13 Si 0.97 43.33 29.54 68.60 2.03 45.35 16 14 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 15 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 16 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 17 N -0.33 -15.35 12.18 -49.55 -0.60 -15.95 16 18 N -0.32 -13.92 12.23 -57.93 -0.71 -14.63 16 19 C 0.40 14.12 5.90 260.05 1.54 15.65 16 20 N -0.54 -14.33 3.12 -540.52 -1.69 -16.01 16 21 C 0.09 1.57 9.63 127.77 1.23 2.80 16 22 C 0.19 5.03 6.51 38.20 0.25 5.28 16 23 C -0.20 -6.56 9.31 22.40 0.21 -6.36 16 24 C -0.09 -2.42 10.04 22.25 0.22 -2.19 16 25 C -0.16 -3.20 10.04 22.29 0.22 -2.97 16 26 C -0.07 -1.11 10.04 22.25 0.22 -0.88 16 27 C -0.17 -3.02 9.17 22.40 0.21 -2.82 16 28 H 0.10 2.36 6.24 -2.91 -0.02 2.34 16 29 H 0.13 2.09 7.99 -2.91 -0.02 2.06 16 30 H 0.06 1.00 7.52 -2.38 -0.02 0.98 16 31 H 0.09 1.01 7.99 -2.39 -0.02 0.99 16 32 H 0.07 0.98 7.39 -2.39 -0.02 0.96 16 33 H 0.09 2.85 7.90 -2.38 -0.02 2.83 16 34 H 0.10 2.70 8.11 -2.39 -0.02 2.68 16 35 H 0.10 3.54 5.57 -2.39 -0.01 3.53 16 36 H 0.09 3.76 8.14 -2.39 -0.02 3.74 16 37 H -0.02 -1.13 8.14 -2.38 -0.02 -1.15 16 38 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 39 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 40 H 0.08 0.96 5.99 -2.39 -0.01 0.95 16 41 H 0.10 1.19 6.77 -2.39 -0.02 1.17 16 42 H 0.06 1.22 8.00 -2.39 -0.02 1.20 16 43 H 0.07 2.91 7.00 -2.91 -0.02 2.89 16 44 H 0.12 3.11 8.06 -2.91 -0.02 3.09 16 45 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 46 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 47 H 0.16 1.71 6.43 -2.91 -0.02 1.69 16 Total: -1.00 -76.26 389.15 6.92 -69.33 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.96 Total: 17.82 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 8.09 Total: -11.28 kcal Atomic # 7 Polarization: -117.06 SS G_CDS: -4.16 Total: -121.22 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -76.26 6.92 -69.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342091314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.457 kcal (2) G-P(sol) polarization free energy of solvation -76.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds