Wall clock time and date at job start Tue Mar 31 2020 15:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99753 * 2 1 4 4 N 1.46504 * 109.46909 * 127.35698 * 3 2 1 5 5 C 1.37542 * 127.16663 * 263.52979 * 4 3 2 6 6 C 1.47879 * 126.47048 * 0.02562 * 5 4 3 7 7 C 1.39955 * 120.02267 * 19.21085 * 6 5 4 8 8 C 1.38331 * 120.35682 * 179.97438 * 7 6 5 9 9 C 1.37755 * 120.40078 * 359.96084 * 8 7 6 10 10 C 1.40781 * 120.03704 * 0.02562 * 9 8 7 11 11 C 1.41434 * 120.17570 * 180.02562 * 10 9 8 12 12 H 1.08007 * 119.99715 * 31.33997 * 11 10 9 13 13 C 1.39918 * 120.00304 * 211.33737 * 11 10 9 14 14 N 1.30835 * 119.99944 * 7.91712 * 13 11 10 15 15 Si 1.86796 * 119.99978 * 187.91131 * 13 11 10 16 16 H 1.48499 * 109.47104 * 60.00392 * 15 13 11 17 17 H 1.48508 * 109.46957 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47443 * 299.99864 * 15 13 11 19 19 C 1.38965 * 120.02615 * 198.93581 * 6 5 4 20 20 N 1.31247 * 107.06353 * 180.02562 * 5 4 3 21 21 N 1.28513 * 109.93420 * 359.73344 * 20 5 4 22 22 C 1.31387 * 110.07566 * 0.44945 * 21 20 5 23 23 N 1.38394 * 126.37260 * 179.81928 * 22 21 20 24 24 C 1.46897 * 111.00359 * 253.36951 * 23 22 21 25 25 C 1.46898 * 111.00208 * 17.32418 * 23 22 21 26 26 C 1.52996 * 109.47697 * 169.99693 * 25 23 22 27 27 C 1.53000 * 109.47441 * 179.97438 * 26 25 23 28 28 H 1.07998 * 120.00165 * 5.73117 * 1 2 3 29 29 H 1.08004 * 119.99683 * 185.74060 * 1 2 3 30 30 H 1.07999 * 120.00183 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47231 * 7.35704 * 3 2 1 32 32 H 1.09001 * 109.47238 * 247.35549 * 3 2 1 33 33 H 1.08008 * 119.82188 * 359.97438 * 7 6 5 34 34 H 1.07994 * 119.79560 * 179.97438 * 8 7 6 35 35 H 1.07999 * 119.97849 * 180.02562 * 9 8 7 36 36 H 0.96998 * 120.00308 * 180.02562 * 14 13 11 37 37 H 1.08000 * 120.19366 * 359.97438 * 19 6 5 38 38 H 1.09001 * 109.47339 * 189.27500 * 24 23 22 39 39 H 1.09003 * 109.46642 * 309.27296 * 24 23 22 40 40 H 1.08994 * 109.47050 * 69.27064 * 24 23 22 41 41 H 1.09008 * 109.47426 * 49.99487 * 25 23 22 42 42 H 1.09005 * 109.47250 * 290.00334 * 25 23 22 43 43 H 1.08997 * 109.47423 * 300.00345 * 26 25 23 44 44 H 1.09008 * 109.46823 * 59.99999 * 26 25 23 45 45 H 1.08994 * 109.47136 * 60.00358 * 27 26 25 46 46 H 1.09005 * 109.46764 * 180.02562 * 27 26 25 47 47 H 1.09000 * 109.46926 * 299.99859 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0334 1.3090 1.0979 5 6 2.8705 1.8573 2.3488 6 6 1.6713 2.5628 2.8498 7 6 0.4380 2.3873 2.2119 8 6 -0.6883 3.0434 2.6751 9 6 -0.6093 3.8761 3.7697 10 6 0.6228 4.0645 4.4243 11 6 0.7071 4.9184 5.5486 12 1 -0.1398 5.0252 6.2103 13 6 1.8877 5.6246 5.8038 14 7 2.8567 5.6185 4.9246 15 14 2.0804 6.5764 7.3995 16 1 1.9648 5.6437 8.5492 17 1 3.4120 7.2333 7.4263 18 1 1.0175 7.6094 7.4912 19 6 1.7669 3.3960 3.9579 20 7 3.9802 1.6363 3.0137 21 7 4.8119 0.9914 2.2762 22 6 4.2871 0.7699 1.0922 23 7 4.8910 0.1078 0.0376 24 6 5.2938 1.0506 -1.0145 25 6 6.0376 -0.6850 0.5010 26 6 6.5232 -1.5905 -0.6326 27 6 7.7177 -2.4158 -0.1501 28 1 -0.5400 0.9306 -0.0934 29 1 -0.5400 -0.9307 0.0936 30 1 1.8500 -0.9353 -0.0004 31 1 1.3625 2.1294 0.1316 32 1 2.5878 1.4220 -0.9484 33 1 0.3652 1.7361 1.3533 34 1 -1.6353 2.9017 2.1757 35 1 -1.4930 4.3846 4.1258 36 1 3.6753 6.1078 5.1016 37 1 2.7156 3.5304 4.4561 38 1 5.6132 0.4958 -1.8967 39 1 4.4490 1.6891 -1.2730 40 1 6.1179 1.6664 -0.6544 41 1 5.7362 -1.2972 1.3512 42 1 6.8437 -0.0162 0.8026 43 1 5.7171 -2.2593 -0.9342 44 1 6.8246 -0.9783 -1.4827 45 1 7.4168 -3.0279 0.7001 46 1 8.0639 -3.0605 -0.9580 47 1 8.5237 -1.7466 0.1510 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342283470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:12 Heat of formation + Delta-G solvation = 129.765625 kcal Electronic energy + Delta-G solvation = -27678.776715 eV Core-core repulsion = 24056.580806 eV Total energy + Delta-G solvation = -3622.195909 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.42333 -38.07562 -37.50677 -36.08610 -33.73218 -33.41253 -32.51987 -30.98230 -29.64236 -28.29305 -27.11345 -26.70338 -25.38332 -24.82150 -22.55157 -21.60166 -21.09378 -20.30090 -19.87995 -19.66194 -17.55250 -16.78494 -16.22230 -16.04467 -15.67737 -15.33908 -14.94330 -14.82555 -14.46696 -14.17477 -13.89572 -13.47027 -13.23617 -13.17999 -12.76804 -12.64543 -12.48206 -12.25565 -12.11434 -11.81168 -11.70080 -11.51092 -11.27913 -11.19021 -11.10314 -11.00385 -10.81272 -10.63708 -10.51376 -10.27312 -9.82239 -9.71068 -9.63697 -9.45574 -9.45369 -9.20905 -8.39072 -7.44982 -7.19499 -6.69836 -4.42660 1.77459 2.01984 2.61768 2.78849 2.90581 3.10642 3.12634 3.16462 3.61621 3.82304 3.96289 4.62553 4.67618 4.74052 4.84063 4.86580 4.87632 5.06381 5.13151 5.18560 5.23005 5.36751 5.44666 5.52485 5.56013 5.60834 5.65661 5.66549 5.75628 5.82251 5.88769 5.96705 6.12250 6.16637 6.26911 6.33404 6.48406 6.55609 6.64341 6.69421 6.94940 7.00526 7.09774 7.24678 7.42153 7.50744 7.68615 7.87003 7.97036 8.19385 8.51584 8.83843 8.85322 9.29005 10.24068 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014055 B = 0.003516 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.633936 B = 7962.783440 C = 9537.287432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.173 4.173 3 C 0.132 3.868 4 N -0.469 5.469 5 C 0.265 3.735 6 C -0.026 4.026 7 C -0.239 4.239 8 C -0.096 4.096 9 C -0.209 4.209 10 C 0.105 3.895 11 C -0.462 4.462 12 H 0.079 0.921 13 C 0.072 3.928 14 N -0.797 5.797 15 Si 0.913 3.087 16 H -0.264 1.264 17 H -0.278 1.278 18 H -0.266 1.266 19 C -0.094 4.094 20 N -0.282 5.282 21 N -0.319 5.319 22 C 0.327 3.673 23 N -0.457 5.457 24 C 0.023 3.977 25 C 0.072 3.928 26 C -0.121 4.121 27 C -0.150 4.150 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.283 0.717 37 H 0.135 0.865 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.041 0.959 41 H 0.083 0.917 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.997 -10.000 -13.417 17.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.192 4.192 3 C 0.010 3.990 4 N -0.163 5.163 5 C 0.001 3.999 6 C -0.029 4.029 7 C -0.259 4.259 8 C -0.115 4.115 9 C -0.229 4.229 10 C 0.103 3.897 11 C -0.492 4.492 12 H 0.097 0.903 13 C -0.145 4.145 14 N -0.423 5.423 15 Si 0.738 3.262 16 H -0.188 1.188 17 H -0.203 1.203 18 H -0.191 1.191 19 C -0.116 4.116 20 N -0.121 5.121 21 N -0.164 5.164 22 C -0.028 4.028 23 N -0.180 5.180 24 C -0.124 4.124 25 C -0.055 4.055 26 C -0.159 4.159 27 C -0.208 4.208 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.111 0.889 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.153 0.847 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.102 0.898 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.973 -10.230 -12.562 16.681 hybrid contribution -0.264 0.920 -0.221 0.982 sum 3.709 -9.310 -12.783 16.243 Atomic orbital electron populations 1.23959 0.95582 1.02638 0.97845 1.23019 0.96139 0.98003 1.02059 1.21117 0.91345 0.98193 0.88354 1.46176 1.12245 1.44702 1.13165 1.23359 0.97389 0.98307 0.80833 1.17362 0.87359 0.99417 0.98750 1.20829 0.92502 1.08197 1.04408 1.20387 0.96075 0.97811 0.97188 1.21193 0.98296 1.04773 0.98630 1.17563 0.90397 0.89934 0.91841 1.19508 0.98902 1.22155 1.08653 0.90263 1.25897 0.94907 0.96157 0.97550 1.69734 1.05386 1.33970 1.33186 0.86280 0.78153 0.79806 0.81952 1.18815 1.20313 1.19117 1.21578 1.00761 0.94194 0.95057 1.74418 0.99116 1.14464 1.24063 1.74554 1.24230 1.16750 1.00893 1.22273 0.85376 1.00603 0.94579 1.58622 1.29693 1.22314 1.07412 1.22567 1.00601 0.94990 0.94252 1.22114 0.89977 0.95494 0.97918 1.21566 0.98256 0.98317 0.97739 1.21711 0.97806 0.99921 1.01373 0.87684 0.87716 0.86633 0.86856 0.88915 0.87626 0.88862 0.88546 0.90628 0.84695 0.89698 0.91388 0.93997 0.89805 0.92822 0.91150 0.91869 0.92435 0.92483 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 12.95 29.01 0.38 -1.46 16 2 C -0.17 -2.19 9.58 -36.02 -0.34 -2.54 16 3 C 0.13 1.86 5.74 -5.19 -0.03 1.83 16 4 N -0.47 -8.55 2.81 -115.96 -0.33 -8.88 16 5 C 0.26 5.95 7.69 -153.79 -1.18 4.77 16 6 C -0.03 -0.61 5.86 -105.04 -0.62 -1.22 16 7 C -0.24 -4.96 8.63 -38.90 -0.34 -5.29 16 8 C -0.10 -2.00 10.01 -39.72 -0.40 -2.40 16 9 C -0.21 -4.86 9.78 -38.80 -0.38 -5.24 16 10 C 0.11 2.74 5.52 -106.87 -0.59 2.15 16 11 C -0.46 -12.08 9.05 -37.74 -0.34 -12.42 16 12 H 0.08 1.97 7.86 -52.48 -0.41 1.55 16 13 C 0.07 1.83 5.28 -17.35 -0.09 1.73 16 14 N -0.80 -21.07 10.89 55.55 0.60 -20.46 16 15 Si 0.91 18.99 29.57 -169.99 -5.03 13.96 16 16 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 17 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 18 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 19 C -0.09 -2.48 8.28 -38.47 -0.32 -2.80 16 20 N -0.28 -6.80 12.00 32.59 0.39 -6.41 16 21 N -0.32 -6.85 11.41 30.31 0.35 -6.50 16 22 C 0.33 5.86 6.84 -318.91 -2.18 3.68 16 23 N -0.46 -6.18 4.77 -182.39 -0.87 -7.05 16 24 C 0.02 0.26 9.11 60.06 0.55 0.80 16 25 C 0.07 0.88 4.36 -3.83 -0.02 0.86 16 26 C -0.12 -1.06 5.86 -26.73 -0.16 -1.22 16 27 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 28 H 0.11 1.14 7.05 -52.49 -0.37 0.77 16 29 H 0.10 1.02 8.06 -52.48 -0.42 0.60 16 30 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 31 H 0.11 1.66 5.37 -51.93 -0.28 1.38 16 32 H 0.09 1.08 6.28 -51.93 -0.33 0.75 16 33 H 0.11 1.84 2.11 -52.48 -0.11 1.73 16 34 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 36 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 37 H 0.14 3.84 6.24 -52.49 -0.33 3.52 16 38 H 0.08 0.69 6.73 -51.93 -0.35 0.34 16 39 H 0.07 0.74 6.20 -51.93 -0.32 0.42 16 40 H 0.04 0.49 8.07 -51.93 -0.42 0.07 16 41 H 0.08 1.15 8.01 -51.92 -0.42 0.73 16 42 H 0.05 0.70 8.07 -51.93 -0.42 0.28 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.49 6.67 -51.92 -0.35 0.15 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 378.99 15.07 5.71 5.71 Total: -1.00 -30.03 378.99 -11.48 -41.51 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.61 Total: 7.66 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -5.69 Total: -19.55 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.15 Total: -49.30 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.03 -11.48 -41.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342283470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.273 kcal (2) G-P(sol) polarization free energy of solvation -30.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds