Wall clock time and date at job start Tue Mar 31 2020 15:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99753 * 2 1 4 4 N 1.46504 * 109.46909 * 127.35698 * 3 2 1 5 5 C 1.37542 * 127.16663 * 263.52979 * 4 3 2 6 6 C 1.47879 * 126.47048 * 0.02562 * 5 4 3 7 7 C 1.39955 * 120.02267 * 19.21085 * 6 5 4 8 8 C 1.38331 * 120.35682 * 179.97438 * 7 6 5 9 9 C 1.37755 * 120.40078 * 359.96084 * 8 7 6 10 10 C 1.40781 * 120.03704 * 0.02562 * 9 8 7 11 11 C 1.41434 * 120.17570 * 180.02562 * 10 9 8 12 12 H 1.08007 * 119.99715 * 31.33997 * 11 10 9 13 13 C 1.39918 * 120.00304 * 211.33737 * 11 10 9 14 14 N 1.30835 * 119.99944 * 7.91712 * 13 11 10 15 15 Si 1.86796 * 119.99978 * 187.91131 * 13 11 10 16 16 H 1.48499 * 109.47104 * 60.00392 * 15 13 11 17 17 H 1.48508 * 109.46957 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47443 * 299.99864 * 15 13 11 19 19 C 1.38965 * 120.02615 * 198.93581 * 6 5 4 20 20 N 1.31247 * 107.06353 * 180.02562 * 5 4 3 21 21 N 1.28513 * 109.93420 * 359.73344 * 20 5 4 22 22 C 1.31387 * 110.07566 * 0.44945 * 21 20 5 23 23 N 1.38394 * 126.37260 * 179.81928 * 22 21 20 24 24 C 1.46897 * 111.00359 * 253.36951 * 23 22 21 25 25 C 1.46898 * 111.00208 * 17.32418 * 23 22 21 26 26 C 1.52996 * 109.47697 * 169.99693 * 25 23 22 27 27 C 1.53000 * 109.47441 * 179.97438 * 26 25 23 28 28 H 1.07998 * 120.00165 * 5.73117 * 1 2 3 29 29 H 1.08004 * 119.99683 * 185.74060 * 1 2 3 30 30 H 1.07999 * 120.00183 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47231 * 7.35704 * 3 2 1 32 32 H 1.09001 * 109.47238 * 247.35549 * 3 2 1 33 33 H 1.08008 * 119.82188 * 359.97438 * 7 6 5 34 34 H 1.07994 * 119.79560 * 179.97438 * 8 7 6 35 35 H 1.07999 * 119.97849 * 180.02562 * 9 8 7 36 36 H 0.96998 * 120.00308 * 180.02562 * 14 13 11 37 37 H 1.08000 * 120.19366 * 359.97438 * 19 6 5 38 38 H 1.09001 * 109.47339 * 189.27500 * 24 23 22 39 39 H 1.09003 * 109.46642 * 309.27296 * 24 23 22 40 40 H 1.08994 * 109.47050 * 69.27064 * 24 23 22 41 41 H 1.09008 * 109.47426 * 49.99487 * 25 23 22 42 42 H 1.09005 * 109.47250 * 290.00334 * 25 23 22 43 43 H 1.08997 * 109.47423 * 300.00345 * 26 25 23 44 44 H 1.09008 * 109.46823 * 59.99999 * 26 25 23 45 45 H 1.08994 * 109.47136 * 60.00358 * 27 26 25 46 46 H 1.09005 * 109.46764 * 180.02562 * 27 26 25 47 47 H 1.09000 * 109.46926 * 299.99859 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0334 1.3090 1.0979 5 6 2.8705 1.8573 2.3488 6 6 1.6713 2.5628 2.8498 7 6 0.4380 2.3873 2.2119 8 6 -0.6883 3.0434 2.6751 9 6 -0.6093 3.8761 3.7697 10 6 0.6228 4.0645 4.4243 11 6 0.7071 4.9184 5.5486 12 1 -0.1398 5.0252 6.2103 13 6 1.8877 5.6246 5.8038 14 7 2.8567 5.6185 4.9246 15 14 2.0804 6.5764 7.3995 16 1 1.9648 5.6437 8.5492 17 1 3.4120 7.2333 7.4263 18 1 1.0175 7.6094 7.4912 19 6 1.7669 3.3960 3.9579 20 7 3.9802 1.6363 3.0137 21 7 4.8119 0.9914 2.2762 22 6 4.2871 0.7699 1.0922 23 7 4.8910 0.1078 0.0376 24 6 5.2938 1.0506 -1.0145 25 6 6.0376 -0.6850 0.5010 26 6 6.5232 -1.5905 -0.6326 27 6 7.7177 -2.4158 -0.1501 28 1 -0.5400 0.9306 -0.0934 29 1 -0.5400 -0.9307 0.0936 30 1 1.8500 -0.9353 -0.0004 31 1 1.3625 2.1294 0.1316 32 1 2.5878 1.4220 -0.9484 33 1 0.3652 1.7361 1.3533 34 1 -1.6353 2.9017 2.1757 35 1 -1.4930 4.3846 4.1258 36 1 3.6753 6.1078 5.1016 37 1 2.7156 3.5304 4.4561 38 1 5.6132 0.4958 -1.8967 39 1 4.4490 1.6891 -1.2730 40 1 6.1179 1.6664 -0.6544 41 1 5.7362 -1.2972 1.3512 42 1 6.8437 -0.0162 0.8026 43 1 5.7171 -2.2593 -0.9342 44 1 6.8246 -0.9783 -1.4827 45 1 7.4168 -3.0279 0.7001 46 1 8.0639 -3.0605 -0.9580 47 1 8.5237 -1.7466 0.1510 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342283470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:11 Heat of formation + Delta-G solvation = 115.895145 kcal Electronic energy + Delta-G solvation = -27679.378185 eV Core-core repulsion = 24056.580806 eV Total energy + Delta-G solvation = -3622.797378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.95900 -39.51867 -38.95000 -37.36166 -35.50516 -34.36656 -33.78432 -32.58505 -31.46863 -29.77937 -28.19684 -27.83126 -27.24662 -25.90070 -24.21229 -23.03312 -22.30454 -21.75053 -21.20141 -20.93118 -19.27867 -18.19917 -17.53347 -17.41277 -17.07765 -16.79984 -16.30392 -16.19504 -15.64636 -15.58800 -15.08531 -14.82141 -14.54844 -14.47358 -14.19690 -14.00004 -13.74131 -13.48030 -13.23942 -12.98168 -12.90498 -12.81368 -12.69470 -12.67964 -12.50523 -12.37047 -12.12608 -12.05864 -11.82094 -11.57108 -11.50357 -11.33133 -11.16878 -11.12862 -10.88070 -10.45990 -9.83296 -9.30730 -8.92363 -8.55734 -6.38919 0.16793 0.86928 1.00474 1.15742 1.37902 1.48885 1.50164 1.55257 1.93073 2.22077 2.62323 2.79481 3.41049 3.58804 3.68713 3.78956 3.83909 3.90347 4.07478 4.07641 4.12107 4.35874 4.41982 4.44769 4.51988 4.54849 4.58077 4.61010 4.71570 4.80066 4.85935 4.88641 4.95506 5.02334 5.13104 5.16755 5.23370 5.26884 5.36407 5.38169 5.43683 5.56397 5.58898 5.63472 5.66092 5.87988 6.01794 6.09396 6.15594 6.32729 6.62304 6.92942 6.96857 7.69409 8.38745 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014055 B = 0.003516 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.633936 B = 7962.783440 C = 9537.287432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.190 4.190 3 C 0.124 3.876 4 N -0.462 5.462 5 C 0.241 3.759 6 C -0.032 4.032 7 C -0.221 4.221 8 C -0.091 4.091 9 C -0.214 4.214 10 C 0.073 3.927 11 C -0.498 4.498 12 H 0.082 0.918 13 C 0.028 3.972 14 N -0.837 5.837 15 Si 0.983 3.017 16 H -0.262 1.262 17 H -0.275 1.275 18 H -0.254 1.254 19 C -0.128 4.128 20 N -0.324 5.324 21 N -0.358 5.358 22 C 0.350 3.650 23 N -0.447 5.447 24 C 0.020 3.980 25 C 0.071 3.929 26 C -0.109 4.109 27 C -0.150 4.150 28 H 0.114 0.886 29 H 0.124 0.876 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.110 0.890 36 H 0.282 0.718 37 H 0.100 0.900 38 H 0.124 0.876 39 H 0.071 0.929 40 H 0.033 0.967 41 H 0.062 0.938 42 H 0.042 0.958 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.050 0.950 46 H 0.075 0.925 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.659 -11.367 -16.412 20.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.209 4.209 3 C 0.004 3.996 4 N -0.155 5.155 5 C -0.025 4.025 6 C -0.035 4.035 7 C -0.241 4.241 8 C -0.109 4.109 9 C -0.234 4.234 10 C 0.071 3.929 11 C -0.528 4.528 12 H 0.100 0.900 13 C -0.185 4.185 14 N -0.464 5.464 15 Si 0.804 3.196 16 H -0.186 1.186 17 H -0.199 1.199 18 H -0.178 1.178 19 C -0.150 4.150 20 N -0.163 5.163 21 N -0.203 5.203 22 C -0.007 4.007 23 N -0.171 5.171 24 C -0.126 4.126 25 C -0.056 4.056 26 C -0.147 4.147 27 C -0.208 4.208 28 H 0.132 0.868 29 H 0.142 0.858 30 H 0.132 0.868 31 H 0.127 0.873 32 H 0.139 0.861 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.128 0.872 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.142 0.858 39 H 0.090 0.910 40 H 0.052 0.948 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.069 0.931 46 H 0.094 0.906 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.614 -11.610 -15.590 19.613 hybrid contribution 0.122 1.154 0.466 1.251 sum 2.737 -10.456 -15.124 18.589 Atomic orbital electron populations 1.24232 0.95068 1.04038 0.95223 1.22914 0.96633 0.97021 1.04360 1.21458 0.91130 0.99024 0.87998 1.46327 1.12869 1.43637 1.12637 1.23161 0.96955 0.99714 0.82647 1.17583 0.89059 0.98686 0.98126 1.21305 0.91194 1.07254 1.04363 1.20874 0.97948 0.96024 0.96036 1.21476 0.97582 1.05132 0.99213 1.17905 0.91601 0.90551 0.92809 1.19788 0.99824 1.23492 1.09737 0.89956 1.26764 0.94254 0.96844 1.00643 1.69862 1.05937 1.35368 1.35186 0.85234 0.78377 0.78501 0.77492 1.18618 1.19939 1.17773 1.21336 0.99763 0.96817 0.97103 1.74304 1.00321 1.15622 1.26091 1.74457 1.24740 1.18456 1.02613 1.22786 0.85183 0.98127 0.94576 1.58923 1.30125 1.22032 1.06066 1.22747 1.00498 0.95085 0.94292 1.22205 0.89001 0.95339 0.99007 1.21516 0.98651 0.97878 0.96615 1.21719 0.97298 0.99923 1.01822 0.86791 0.85766 0.86759 0.87277 0.86121 0.83963 0.84083 0.87152 0.90730 0.88216 0.85773 0.91033 0.94836 0.91957 0.94007 0.90561 0.90043 0.93117 0.90607 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 12.95 67.78 0.88 -1.84 16 2 C -0.19 -4.22 9.58 25.65 0.25 -3.98 16 3 C 0.12 3.19 5.74 85.63 0.49 3.69 16 4 N -0.46 -16.60 2.81 -520.80 -1.47 -18.07 16 5 C 0.24 11.17 7.69 136.24 1.05 12.22 16 6 C -0.03 -1.53 5.86 -20.13 -0.12 -1.65 16 7 C -0.22 -8.80 8.63 22.71 0.20 -8.60 16 8 C -0.09 -3.54 10.01 22.18 0.22 -3.32 16 9 C -0.21 -9.88 9.78 22.78 0.22 -9.66 16 10 C 0.07 3.99 5.52 -21.32 -0.12 3.87 16 11 C -0.50 -27.28 9.05 23.46 0.21 -27.06 16 12 H 0.08 4.25 7.86 -2.91 -0.02 4.22 16 13 C 0.03 1.48 5.28 85.25 0.45 1.93 16 14 N -0.84 -47.17 10.89 21.82 0.24 -46.93 16 15 Si 0.98 40.50 29.57 68.60 2.03 42.53 16 16 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 17 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 18 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 19 C -0.13 -7.15 8.28 22.99 0.19 -6.96 16 20 N -0.32 -16.58 12.00 -50.80 -0.61 -17.18 16 21 N -0.36 -16.01 11.41 -58.02 -0.66 -16.67 16 22 C 0.35 12.52 6.84 260.13 1.78 14.30 16 23 N -0.45 -11.41 4.77 -730.96 -3.49 -14.89 16 24 C 0.02 0.39 9.11 127.69 1.16 1.55 16 25 C 0.07 1.68 4.36 86.30 0.38 2.06 16 26 C -0.11 -1.63 5.86 30.59 0.18 -1.45 16 27 C -0.15 -2.02 9.91 71.98 0.71 -1.31 16 28 H 0.11 1.91 7.05 -2.91 -0.02 1.89 16 29 H 0.12 1.85 8.06 -2.91 -0.02 1.82 16 30 H 0.11 2.60 8.06 -2.91 -0.02 2.58 16 31 H 0.11 2.89 5.37 -2.39 -0.01 2.88 16 32 H 0.12 2.40 6.28 -2.39 -0.01 2.39 16 33 H 0.14 4.51 2.11 -2.91 -0.01 4.50 16 34 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 35 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 36 H 0.28 14.85 8.30 -92.71 -0.77 14.08 16 37 H 0.10 6.20 6.24 -2.91 -0.02 6.18 16 38 H 0.12 1.46 6.73 -2.39 -0.02 1.45 16 39 H 0.07 1.35 6.20 -2.39 -0.01 1.33 16 40 H 0.03 0.72 8.07 -2.39 -0.02 0.70 16 41 H 0.06 1.73 8.01 -2.38 -0.02 1.72 16 42 H 0.04 1.09 8.07 -2.38 -0.02 1.07 16 43 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.08 0.95 6.67 -2.38 -0.02 0.94 16 45 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 47 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -72.00 378.99 5.15 -66.85 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.98 Total: 30.57 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 8.13 Total: -26.20 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -5.99 Total: -113.75 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -72.00 5.15 -66.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342283470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.745 kcal (2) G-P(sol) polarization free energy of solvation -72.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds