Wall clock time and date at job start Tue Mar 31 2020 15:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46900 * 109.47052 * 179.24117 * 3 2 1 5 5 C 1.46900 * 111.00009 * 199.72132 * 4 3 2 6 6 C 1.47202 * 109.46884 * 66.04519 * 5 4 3 7 7 C 4.65408 * 138.24601 * 103.08623 * 2 1 3 8 8 C 5.67649 * 128.54853 * 93.72436 * 2 1 3 9 9 C 1.38587 * 111.00086 * 75.76990 * 4 3 2 10 10 N 1.31211 * 126.47353 * 68.20487 * 9 4 3 11 11 N 1.28527 * 109.85965 * 179.69683 * 10 9 4 12 12 C 1.30293 * 110.05070 * 0.44896 * 11 10 9 13 13 C 1.50703 * 126.34594 * 179.82638 * 12 11 10 14 14 C 1.53004 * 109.46893 * 269.69160 * 13 12 11 15 15 C 1.50699 * 109.47148 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99967 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99809 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00269 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99900 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47194 * 59.99650 * 19 17 15 21 21 H 1.48490 * 109.47531 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47190 * 299.99976 * 19 17 15 23 23 N 1.36450 * 126.46884 * 248.16191 * 9 4 3 24 24 C 1.46496 * 127.13873 * 0.05922 * 23 9 4 25 25 C 1.53003 * 109.46912 * 265.37445 * 24 23 9 26 26 C 1.53005 * 117.50004 * 243.40034 * 25 24 23 27 27 C 1.53001 * 59.99955 * 252.50980 * 26 25 24 28 28 H 4.40878 * 5.52166 * 179.97438 * 4 1 2 29 29 H 1.08999 * 109.47595 * 59.23971 * 3 2 1 30 30 H 1.09004 * 109.47381 * 299.23781 * 3 2 1 31 31 H 1.08998 * 109.47080 * 186.04667 * 5 4 3 32 32 H 1.08995 * 109.47346 * 306.04828 * 5 4 3 33 33 H 1.09005 * 109.46973 * 249.05096 * 8 7 6 34 34 H 1.09004 * 109.47101 * 9.04720 * 8 7 6 35 35 H 1.08995 * 109.46877 * 129.05108 * 8 7 6 36 36 H 1.08997 * 109.47401 * 149.69201 * 13 12 11 37 37 H 1.09001 * 109.47142 * 29.68691 * 13 12 11 38 38 H 1.08997 * 109.47338 * 59.99359 * 14 13 12 39 39 H 1.09001 * 109.46843 * 299.99714 * 14 13 12 40 40 H 0.97000 * 119.99953 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.47793 * 25.37553 * 24 23 9 42 42 H 1.09001 * 109.47214 * 145.37871 * 24 23 9 43 43 H 1.08995 * 115.55191 * 29.11163 * 25 24 23 44 44 H 1.08991 * 117.49965 * 0.02562 * 26 25 24 45 45 H 1.08998 * 117.49717 * 145.02181 * 26 25 24 46 46 H 1.09000 * 117.50029 * 252.50747 * 27 26 25 47 47 H 1.09004 * 117.49539 * 107.49091 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 1.3857 -0.0183 5 6 4.5276 1.4463 -0.4820 6 6 4.5932 1.0329 -1.8932 7 6 4.6460 0.7017 -3.0188 8 6 4.7114 0.2884 -4.4301 9 6 3.0004 1.9765 1.2281 10 7 3.6658 1.6646 2.3150 11 7 3.2926 2.4183 3.2869 12 6 2.3678 3.2426 2.8833 13 6 1.6705 4.2826 3.7218 14 6 0.4170 3.6727 4.3525 15 6 -0.2807 4.7129 5.1905 16 1 0.1292 5.7092 5.2661 17 6 -1.4422 4.3926 5.8607 18 7 -1.9416 3.1795 5.7682 19 14 -2.3067 5.6818 6.9001 20 1 -2.6924 6.8315 6.0429 21 1 -3.5239 5.0903 7.5111 22 1 -1.3912 6.1488 7.9720 23 7 2.1514 2.9930 1.5564 24 6 1.2042 3.6751 0.6711 25 6 1.8547 4.9390 0.1050 26 6 1.2263 6.2838 0.4759 27 6 1.0679 5.7304 -0.9417 28 1 -1.0502 -0.0004 -0.0002 29 1 3.0096 -0.5248 -0.8831 30 1 3.0096 -0.5011 0.8968 31 1 4.8990 2.4664 -0.3844 32 1 5.1408 0.7771 0.1215 33 1 5.2344 -0.6650 -4.5055 34 1 3.7009 0.1806 -4.8244 35 1 5.2474 1.0433 -5.0053 36 1 1.3869 5.1263 3.0926 37 1 2.3427 4.6257 4.5083 38 1 0.7006 2.8290 4.9816 39 1 -0.2552 3.3296 3.5660 40 1 -2.7590 2.9543 6.2395 41 1 0.9287 3.0104 -0.1476 42 1 0.3116 3.9471 1.2345 43 1 2.9388 4.9022 -0.0021 44 1 0.3497 6.2682 1.1234 45 1 1.8970 7.1320 0.6130 46 1 1.6344 6.2145 -1.7372 47 1 0.0868 5.3506 -1.2270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349004735.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:20 Heat of formation + Delta-G solvation = 210.898186 kcal Electronic energy + Delta-G solvation = -27362.015439 eV Core-core repulsion = 23743.337702 eV Total energy + Delta-G solvation = -3618.677737 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.65235 -38.24306 -37.72038 -34.41505 -34.35157 -33.68638 -33.01437 -31.73009 -29.87018 -28.58671 -27.54033 -27.11965 -25.37967 -24.69358 -22.46113 -21.98891 -21.33482 -20.53926 -19.91100 -18.35976 -17.40831 -17.04152 -16.38524 -16.29674 -15.89073 -15.19643 -14.92681 -14.66108 -14.51252 -14.14818 -14.01453 -13.82928 -13.69782 -13.53771 -13.41668 -12.93182 -12.90608 -12.69083 -12.27429 -11.94528 -11.56248 -11.37405 -11.22046 -10.99310 -10.78116 -10.69700 -10.57957 -10.51774 -10.26808 -10.20953 -10.13557 -9.94798 -9.88069 -9.83749 -9.67543 -9.24767 -8.91099 -8.44272 -8.41336 -6.05896 -4.10186 1.97078 2.03299 2.49326 2.71253 2.86829 2.87747 3.24453 3.30042 3.35276 3.37396 3.67662 3.82165 4.06345 4.37160 4.40307 4.60345 4.74817 4.85879 4.88290 5.01181 5.10744 5.15964 5.22733 5.26126 5.27170 5.30074 5.32696 5.34360 5.36080 5.53613 5.57372 5.59404 5.61389 5.76757 5.85974 5.93119 6.04085 6.11579 6.31540 6.37359 6.42318 6.46548 6.67181 6.91670 7.38360 7.43958 7.54441 7.62399 7.68221 7.91303 8.28773 8.95664 9.12223 9.54386 11.05110 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014710 B = 0.003198 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.036893 B = 8752.463944 C = 9291.879674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.190 4.190 3 C 0.173 3.827 4 N -0.455 5.455 5 C 0.187 3.813 6 C -0.182 4.182 7 C -0.172 4.172 8 C -0.040 4.040 9 C 0.318 3.682 10 N -0.310 5.310 11 N -0.297 5.297 12 C 0.225 3.775 13 C -0.033 4.033 14 C 0.033 3.967 15 C -0.524 4.524 16 H 0.058 0.942 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.894 3.106 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.275 1.275 23 N -0.453 5.453 24 C 0.144 3.856 25 C -0.169 4.169 26 C -0.173 4.173 27 C -0.168 4.168 28 H 0.219 0.781 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.025 0.975 39 H 0.013 0.987 40 H 0.262 0.738 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.049 -2.028 -20.641 22.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.191 4.191 3 C 0.047 3.953 4 N -0.180 5.180 5 C 0.061 3.939 6 C -0.183 4.183 7 C -0.173 4.173 8 C -0.096 4.096 9 C -0.038 4.038 10 N -0.155 5.155 11 N -0.137 5.137 12 C -0.042 4.042 13 C -0.073 4.073 14 C -0.005 4.005 15 C -0.562 4.562 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.201 1.201 23 N -0.145 5.145 24 C 0.021 3.979 25 C -0.188 4.188 26 C -0.210 4.210 27 C -0.206 4.206 28 H 0.236 0.764 29 H 0.124 0.876 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.043 0.957 39 H 0.031 0.969 40 H 0.072 0.928 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.612 -2.577 -20.001 22.340 hybrid contribution -1.272 0.811 0.155 1.517 sum 8.340 -1.766 -19.845 21.599 Atomic orbital electron populations 1.24944 0.95882 0.98215 1.00766 1.22620 0.93955 1.01782 1.00699 1.19092 0.85769 0.87084 1.03361 1.58325 1.21648 1.18277 1.19721 1.18845 0.86543 1.02728 0.85763 1.21824 1.02218 1.00499 0.93725 1.22381 0.99453 1.01154 0.94329 1.18877 1.03152 1.01546 0.86045 1.21887 0.95926 0.94089 0.91943 1.74454 1.23403 1.21457 0.96155 1.74059 1.12666 1.05767 1.21203 1.25633 0.96830 1.00395 0.81378 1.20487 0.98494 0.92312 0.96034 1.19050 0.89260 0.96693 0.95470 1.21086 1.08397 0.97385 1.29312 0.92335 1.25004 0.97258 0.95355 0.96577 1.69962 1.21345 1.18878 1.42863 0.86631 0.78994 0.81567 0.80671 1.20207 1.21300 1.20066 1.46225 1.30813 1.27263 1.10197 1.21410 0.90571 0.92580 0.93346 1.22502 0.99360 0.92248 1.04717 1.23166 1.03493 0.96246 0.98097 1.22926 1.01606 1.03347 0.92703 0.76417 0.87619 0.90250 0.88078 0.90124 0.90209 0.89980 0.90171 0.90891 0.89298 0.95702 0.96885 0.92818 0.88206 0.88061 0.87695 0.87602 0.88599 0.88664 0.88460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 19.25 29.55 0.57 -1.86 16 2 C -0.19 -2.75 13.23 -37.12 -0.49 -3.24 16 3 C 0.17 2.28 5.32 -6.61 -0.04 2.24 16 4 N -0.46 -6.28 4.40 -181.18 -0.80 -7.07 16 5 C 0.19 2.19 5.31 -6.61 -0.04 2.16 16 6 C -0.18 -2.03 12.24 -37.12 -0.45 -2.49 16 7 C -0.17 -1.71 14.13 -37.12 -0.52 -2.23 16 8 C -0.04 -0.24 10.32 34.37 0.35 0.11 16 9 C 0.32 5.37 5.97 -318.88 -1.90 3.47 16 10 N -0.31 -6.06 12.02 30.31 0.36 -5.70 16 11 N -0.30 -6.40 12.18 32.99 0.40 -6.00 16 12 C 0.22 4.49 7.32 -154.02 -1.13 3.36 16 13 C -0.03 -0.68 5.45 -27.88 -0.15 -0.83 16 14 C 0.03 0.85 4.95 -27.88 -0.14 0.71 16 15 C -0.52 -14.18 9.11 -34.44 -0.31 -14.50 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 19 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 N -0.45 -7.81 2.81 -114.09 -0.32 -8.13 16 24 C 0.14 2.07 6.14 -4.04 -0.02 2.05 16 25 C -0.17 -2.07 6.01 -90.61 -0.54 -2.62 16 26 C -0.17 -1.98 10.03 -26.73 -0.27 -2.25 16 27 C -0.17 -1.69 10.25 -26.73 -0.27 -1.97 16 28 H 0.22 2.28 7.80 -54.08 -0.42 1.86 16 29 H 0.11 1.17 6.84 -51.93 -0.36 0.81 16 30 H 0.08 1.11 7.89 -51.93 -0.41 0.70 16 31 H 0.10 1.17 8.05 -51.93 -0.42 0.75 16 32 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 1.34 7.82 -51.93 -0.41 0.94 16 37 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 38 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.10 1.38 8.12 -51.93 -0.42 0.96 16 42 H 0.10 1.56 7.78 -51.93 -0.40 1.15 16 43 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 44 H 0.11 1.31 8.03 -51.93 -0.42 0.89 16 45 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 413.99 15.07 6.24 6.24 Total: -1.00 -32.97 413.99 -11.30 -44.28 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -7.45 Total: 2.26 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -5.46 Total: -16.31 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.38 Total: -52.55 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.97 -11.30 -44.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349004735.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 255.175 kcal (2) G-P(sol) polarization free energy of solvation -32.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 222.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 210.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds