Wall clock time and date at job start Tue Mar 31 2020 15:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46900 * 109.47052 * 179.24117 * 3 2 1 5 5 C 1.46900 * 111.00009 * 199.72132 * 4 3 2 6 6 C 1.47202 * 109.46884 * 66.04519 * 5 4 3 7 7 C 4.65408 * 138.24601 * 103.08623 * 2 1 3 8 8 C 5.67649 * 128.54853 * 93.72436 * 2 1 3 9 9 C 1.38587 * 111.00086 * 75.76990 * 4 3 2 10 10 N 1.31211 * 126.47353 * 68.20487 * 9 4 3 11 11 N 1.28527 * 109.85965 * 179.69683 * 10 9 4 12 12 C 1.30293 * 110.05070 * 0.44896 * 11 10 9 13 13 C 1.50703 * 126.34594 * 179.82638 * 12 11 10 14 14 C 1.53004 * 109.46893 * 269.69160 * 13 12 11 15 15 C 1.50699 * 109.47148 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99967 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99809 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00269 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99900 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47194 * 59.99650 * 19 17 15 21 21 H 1.48490 * 109.47531 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47190 * 299.99976 * 19 17 15 23 23 N 1.36450 * 126.46884 * 248.16191 * 9 4 3 24 24 C 1.46496 * 127.13873 * 0.05922 * 23 9 4 25 25 C 1.53003 * 109.46912 * 265.37445 * 24 23 9 26 26 C 1.53005 * 117.50004 * 243.40034 * 25 24 23 27 27 C 1.53001 * 59.99955 * 252.50980 * 26 25 24 28 28 H 4.40878 * 5.52166 * 179.97438 * 4 1 2 29 29 H 1.08999 * 109.47595 * 59.23971 * 3 2 1 30 30 H 1.09004 * 109.47381 * 299.23781 * 3 2 1 31 31 H 1.08998 * 109.47080 * 186.04667 * 5 4 3 32 32 H 1.08995 * 109.47346 * 306.04828 * 5 4 3 33 33 H 1.09005 * 109.46973 * 249.05096 * 8 7 6 34 34 H 1.09004 * 109.47101 * 9.04720 * 8 7 6 35 35 H 1.08995 * 109.46877 * 129.05108 * 8 7 6 36 36 H 1.08997 * 109.47401 * 149.69201 * 13 12 11 37 37 H 1.09001 * 109.47142 * 29.68691 * 13 12 11 38 38 H 1.08997 * 109.47338 * 59.99359 * 14 13 12 39 39 H 1.09001 * 109.46843 * 299.99714 * 14 13 12 40 40 H 0.97000 * 119.99953 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.47793 * 25.37553 * 24 23 9 42 42 H 1.09001 * 109.47214 * 145.37871 * 24 23 9 43 43 H 1.08995 * 115.55191 * 29.11163 * 25 24 23 44 44 H 1.08991 * 117.49965 * 0.02562 * 26 25 24 45 45 H 1.08998 * 117.49717 * 145.02181 * 26 25 24 46 46 H 1.09000 * 117.50029 * 252.50747 * 27 26 25 47 47 H 1.09004 * 117.49539 * 107.49091 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 1.3857 -0.0183 5 6 4.5276 1.4463 -0.4820 6 6 4.5932 1.0329 -1.8932 7 6 4.6460 0.7017 -3.0188 8 6 4.7114 0.2884 -4.4301 9 6 3.0004 1.9765 1.2281 10 7 3.6658 1.6646 2.3150 11 7 3.2926 2.4183 3.2869 12 6 2.3678 3.2426 2.8833 13 6 1.6705 4.2826 3.7218 14 6 0.4170 3.6727 4.3525 15 6 -0.2807 4.7129 5.1905 16 1 0.1292 5.7092 5.2661 17 6 -1.4422 4.3926 5.8607 18 7 -1.9416 3.1795 5.7682 19 14 -2.3067 5.6818 6.9001 20 1 -2.6924 6.8315 6.0429 21 1 -3.5239 5.0903 7.5111 22 1 -1.3912 6.1488 7.9720 23 7 2.1514 2.9930 1.5564 24 6 1.2042 3.6751 0.6711 25 6 1.8547 4.9390 0.1050 26 6 1.2263 6.2838 0.4759 27 6 1.0679 5.7304 -0.9417 28 1 -1.0502 -0.0004 -0.0002 29 1 3.0096 -0.5248 -0.8831 30 1 3.0096 -0.5011 0.8968 31 1 4.8990 2.4664 -0.3844 32 1 5.1408 0.7771 0.1215 33 1 5.2344 -0.6650 -4.5055 34 1 3.7009 0.1806 -4.8244 35 1 5.2474 1.0433 -5.0053 36 1 1.3869 5.1263 3.0926 37 1 2.3427 4.6257 4.5083 38 1 0.7006 2.8290 4.9816 39 1 -0.2552 3.3296 3.5660 40 1 -2.7590 2.9543 6.2395 41 1 0.9287 3.0104 -0.1476 42 1 0.3116 3.9471 1.2345 43 1 2.9388 4.9022 -0.0021 44 1 0.3497 6.2682 1.1234 45 1 1.8970 7.1320 0.6130 46 1 1.6344 6.2145 -1.7372 47 1 0.0868 5.3506 -1.2270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349004735.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:19 Heat of formation + Delta-G solvation = 196.108003 kcal Electronic energy + Delta-G solvation = -27362.656790 eV Core-core repulsion = 23743.337702 eV Total energy + Delta-G solvation = -3619.319088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.11215 -39.36429 -38.73357 -36.15579 -35.33179 -35.04704 -34.16708 -33.50990 -30.89488 -29.99280 -28.78411 -28.09266 -27.16013 -25.83476 -23.85079 -23.30095 -22.53930 -21.90168 -21.31471 -19.47998 -18.65231 -18.49150 -17.98835 -17.50377 -17.00239 -16.50480 -16.25532 -15.94625 -15.76317 -15.31017 -15.20410 -15.01645 -14.69731 -14.39313 -14.29791 -14.26829 -14.17561 -13.91208 -13.75663 -13.24253 -13.05352 -12.84621 -12.76409 -12.55382 -12.39518 -12.17045 -11.85090 -11.77128 -11.69912 -11.54248 -11.34897 -11.33158 -11.07482 -10.98933 -10.92832 -10.72689 -10.56281 -10.09363 -9.99166 -8.19891 -6.32289 0.60679 0.87506 1.43258 1.46471 1.53789 1.62343 1.63443 1.70660 1.78346 1.86053 2.42181 2.71689 2.81547 3.14343 3.20621 3.35352 3.40013 3.62305 3.68997 3.85246 3.90434 3.99614 4.11377 4.14114 4.19337 4.33135 4.33494 4.49765 4.54714 4.63583 4.71931 4.73426 4.78069 4.84781 4.85682 4.86583 4.91728 4.96841 5.04021 5.09471 5.14260 5.23982 5.35430 5.42573 5.46826 5.57335 5.77978 6.07842 6.16430 6.53573 6.63768 6.82958 7.37704 7.61270 8.92021 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014710 B = 0.003198 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.036893 B = 8752.463944 C = 9291.879674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.222 4.222 3 C 0.175 3.825 4 N -0.450 5.450 5 C 0.191 3.809 6 C -0.222 4.222 7 C -0.154 4.154 8 C -0.046 4.046 9 C 0.338 3.662 10 N -0.336 5.336 11 N -0.329 5.329 12 C 0.210 3.790 13 C -0.016 4.016 14 C 0.047 3.953 15 C -0.537 4.537 16 H 0.073 0.927 17 C 0.002 3.998 18 N -0.934 5.934 19 Si 0.966 3.034 20 H -0.260 1.260 21 H -0.288 1.288 22 H -0.268 1.268 23 N -0.450 5.450 24 C 0.145 3.855 25 C -0.180 4.180 26 C -0.178 4.178 27 C -0.144 4.144 28 H 0.243 0.757 29 H 0.129 0.871 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.090 0.910 38 H -0.018 1.018 39 H -0.009 1.009 40 H 0.263 0.737 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.106 0.894 46 H 0.115 0.885 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.914 -0.648 -22.988 24.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.223 4.223 3 C 0.049 3.951 4 N -0.176 5.176 5 C 0.067 3.933 6 C -0.222 4.222 7 C -0.155 4.155 8 C -0.101 4.101 9 C -0.019 4.019 10 N -0.180 5.180 11 N -0.169 5.169 12 C -0.059 4.059 13 C -0.056 4.056 14 C 0.008 3.992 15 C -0.575 4.575 16 H 0.091 0.909 17 C -0.196 4.196 18 N -0.574 5.574 19 Si 0.790 3.210 20 H -0.185 1.185 21 H -0.214 1.214 22 H -0.193 1.193 23 N -0.141 5.141 24 C 0.023 3.977 25 C -0.199 4.199 26 C -0.215 4.215 27 C -0.181 4.181 28 H 0.259 0.741 29 H 0.147 0.853 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.000 1.000 39 H 0.010 0.990 40 H 0.072 0.928 41 H 0.124 0.876 42 H 0.107 0.893 43 H 0.118 0.882 44 H 0.113 0.887 45 H 0.125 0.875 46 H 0.133 0.867 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.492 -1.182 -22.371 24.331 hybrid contribution -1.224 0.281 0.742 1.459 sum 8.268 -0.902 -21.629 23.173 Atomic orbital electron populations 1.25671 0.96748 0.97194 0.99831 1.23083 0.94783 1.02776 1.01647 1.19136 0.85441 0.86627 1.03873 1.58557 1.23104 1.18529 1.17394 1.18764 0.85135 1.02802 0.86639 1.21714 1.04261 1.02352 0.93914 1.23284 0.97532 0.99588 0.95136 1.19166 1.04409 1.02821 0.83696 1.22201 0.94301 0.92965 0.92397 1.74382 1.24826 1.22061 0.96729 1.73959 1.13732 1.06562 1.22605 1.25366 0.97310 1.00627 0.82571 1.20177 0.96281 0.92739 0.96370 1.18795 0.90901 0.95268 0.94196 1.21526 1.08579 0.98186 1.29222 0.90907 1.25975 0.98189 0.97483 0.97927 1.70117 1.21932 1.21211 1.44127 0.85482 0.77560 0.78945 0.78975 1.18475 1.21356 1.19253 1.46361 1.30878 1.27234 1.09632 1.21551 0.89819 0.93655 0.92702 1.22359 0.99117 0.91541 1.06894 1.23199 1.03151 0.95903 0.99216 1.23041 1.01618 1.01200 0.92283 0.74063 0.85320 0.91433 0.88248 0.90064 0.88471 0.88748 0.88529 0.88666 0.89192 1.00003 0.99016 0.92817 0.87593 0.89305 0.88198 0.88741 0.87541 0.86690 0.87652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.67 19.25 74.32 1.43 -3.24 16 2 C -0.22 -6.40 13.23 31.12 0.41 -5.99 16 3 C 0.17 4.61 5.32 84.50 0.45 5.06 16 4 N -0.45 -12.42 4.40 -727.14 -3.20 -15.62 16 5 C 0.19 4.48 5.31 84.50 0.45 4.93 16 6 C -0.22 -4.71 12.24 31.12 0.38 -4.33 16 7 C -0.15 -2.74 14.13 31.12 0.44 -2.30 16 8 C -0.05 -0.40 10.32 70.18 0.72 0.32 16 9 C 0.34 11.68 5.97 260.11 1.55 13.23 16 10 N -0.34 -13.59 12.02 -58.01 -0.70 -14.28 16 11 N -0.33 -14.73 12.18 -49.54 -0.60 -15.34 16 12 C 0.21 8.65 7.32 137.64 1.01 9.66 16 13 C -0.02 -0.67 5.45 29.85 0.16 -0.51 16 14 C 0.05 2.46 4.95 29.85 0.15 2.61 16 15 C -0.54 -29.40 9.11 25.60 0.23 -29.17 16 16 H 0.07 3.70 7.74 -2.91 -0.02 3.67 16 17 C 0.00 0.13 5.46 84.65 0.46 0.59 16 18 N -0.93 -56.57 13.29 21.45 0.28 -56.29 16 19 Si 0.97 43.10 29.54 68.60 2.03 45.13 16 20 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 21 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 N -0.45 -15.82 2.81 -514.86 -1.45 -17.26 16 24 C 0.14 4.15 6.14 86.38 0.53 4.68 16 25 C -0.18 -4.21 6.01 -10.79 -0.06 -4.27 16 26 C -0.18 -3.78 10.03 30.60 0.31 -3.47 16 27 C -0.14 -2.54 10.25 30.60 0.31 -2.23 16 28 H 0.24 4.77 7.80 -4.41 -0.03 4.73 16 29 H 0.13 2.75 6.84 -2.39 -0.02 2.73 16 30 H 0.07 1.94 7.89 -2.39 -0.02 1.93 16 31 H 0.10 2.31 8.05 -2.39 -0.02 2.29 16 32 H 0.08 1.86 8.12 -2.39 -0.02 1.84 16 33 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.09 3.51 7.82 -2.39 -0.02 3.49 16 37 H 0.09 3.72 8.14 -2.39 -0.02 3.70 16 38 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 39 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 40 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 41 H 0.11 2.88 8.12 -2.39 -0.02 2.86 16 42 H 0.09 2.77 7.78 -2.39 -0.02 2.75 16 43 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.09 2.24 8.03 -2.39 -0.02 2.22 16 45 H 0.11 2.03 8.14 -2.39 -0.02 2.02 16 46 H 0.11 1.62 8.14 -2.39 -0.02 1.61 16 47 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -73.00 413.99 6.25 -66.75 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.95 Total: 21.32 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: 8.94 Total: -14.42 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -5.66 Total: -118.79 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -73.00 6.25 -66.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349004735.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 262.859 kcal (2) G-P(sol) polarization free energy of solvation -73.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 196.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds