Wall clock time and date at job start Tue Mar 31 2020 14:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38309 * 120.08178 * 2 1 4 4 C 1.37827 * 120.23080 * 179.97438 * 3 2 1 5 5 C 1.39676 * 120.27688 * 359.97121 * 4 3 2 6 6 C 1.38600 * 119.03684 * 0.02852 * 5 4 3 7 7 C 1.38173 * 120.46677 * 359.97438 * 6 5 4 8 8 C 1.51219 * 108.54649 * 180.02562 * 6 5 4 9 9 C 1.53743 * 104.55227 * 359.97438 * 8 6 5 10 10 N 1.39667 * 129.32951 * 179.72535 * 5 4 3 11 11 C 1.38673 * 124.96353 * 359.96102 * 10 5 4 12 12 N 1.31220 * 126.47055 * 4.98025 * 11 10 5 13 13 N 1.28536 * 109.85154 * 179.85575 * 12 11 10 14 14 C 1.30315 * 110.04919 * 0.41287 * 13 12 11 15 15 C 1.50705 * 126.34285 * 179.70852 * 14 13 12 16 16 C 1.52997 * 109.47297 * 270.04896 * 15 14 13 17 17 C 1.52997 * 109.46842 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47308 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99725 * 359.97438 * 18 17 16 20 20 C 1.37869 * 120.00313 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00416 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00103 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47184 * 89.99498 * 22 20 18 24 24 H 1.48497 * 109.47199 * 210.00059 * 22 20 18 25 25 H 1.48504 * 109.47102 * 330.00263 * 22 20 18 26 26 N 1.36474 * 126.47597 * 185.28690 * 11 10 5 27 27 C 1.46501 * 127.13727 * 359.97438 * 26 11 10 28 28 H 1.08998 * 109.46897 * 90.00325 * 1 2 3 29 29 H 1.09003 * 109.46838 * 210.00013 * 1 2 3 30 30 H 1.08999 * 109.47224 * 330.00440 * 1 2 3 31 31 H 1.08001 * 119.88176 * 359.95089 * 3 2 1 32 32 H 1.08001 * 119.86019 * 180.02562 * 4 3 2 33 33 H 1.07999 * 119.92033 * 180.02562 * 7 6 5 34 34 H 1.08997 * 110.42146 * 118.77121 * 8 6 5 35 35 H 1.09005 * 110.41456 * 241.23009 * 8 6 5 36 36 H 1.08999 * 110.29936 * 118.93261 * 9 8 6 37 37 H 1.09000 * 110.29750 * 241.07393 * 9 8 6 38 38 H 1.09000 * 109.46765 * 30.05368 * 15 14 13 39 39 H 1.08994 * 109.46784 * 150.04753 * 15 14 13 40 40 H 1.08995 * 109.47217 * 299.99700 * 16 15 14 41 41 H 1.09001 * 109.46961 * 60.00062 * 16 15 14 42 42 H 1.08999 * 109.47813 * 299.99774 * 17 16 15 43 43 H 1.09001 * 109.47142 * 60.00356 * 17 16 15 44 44 H 0.96993 * 120.00299 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.46998 * 85.30564 * 27 26 11 46 46 H 1.08999 * 109.47628 * 205.30910 * 27 26 11 47 47 H 1.09002 * 109.46899 * 325.30846 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2003 1.1968 0.0000 4 6 3.5785 1.2004 0.0005 5 6 4.2859 -0.0040 0.0017 6 6 3.5817 -1.1978 0.0017 7 6 2.1999 -1.1961 0.0011 8 6 4.5721 -2.3405 0.0037 9 6 5.9496 -1.6578 0.0042 10 7 5.6657 -0.2202 -0.0028 11 6 6.6267 0.7796 -0.0103 12 7 6.4097 2.0707 0.0772 13 7 7.5273 2.7046 0.0416 14 6 8.5147 1.8627 -0.0786 15 6 9.9789 2.2096 -0.1621 16 6 10.3721 2.4135 -1.6266 17 6 11.8585 2.7662 -1.7111 18 6 12.2460 2.9665 -3.1537 19 1 11.5062 2.8531 -3.9323 20 6 13.5451 3.2935 -3.4795 21 7 14.4462 3.4311 -2.5315 22 14 14.0256 3.5410 -5.2677 23 1 13.8364 4.9665 -5.6383 24 1 15.4503 3.1659 -5.4539 25 1 13.1718 2.6874 -6.1324 26 7 7.9763 0.6068 -0.1160 27 6 8.6984 -0.6615 -0.2429 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6597 2.1318 -0.0008 32 1 4.1138 2.1384 0.0009 33 1 1.6601 -2.1315 0.0015 34 1 4.4486 -2.9493 0.8993 35 1 4.4506 -2.9505 -0.8915 36 1 6.5073 -1.9321 0.8996 37 1 6.5087 -1.9338 -0.8898 38 1 10.1674 3.1268 0.3959 39 1 10.5693 1.3980 0.2630 40 1 10.1837 1.4963 -2.1844 41 1 9.7817 3.2252 -2.0516 42 1 12.0466 3.6836 -1.1534 43 1 12.4492 1.9549 -1.2859 44 1 15.3602 3.6608 -2.7608 45 1 8.7325 -0.9568 -1.2916 46 1 9.7141 -0.5407 0.1338 47 1 8.1858 -1.4308 0.3347 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350633843.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:39 Heat of formation + Delta-G solvation = 105.508054 kcal Electronic energy + Delta-G solvation = -26702.412797 eV Core-core repulsion = 23079.165001 eV Total energy + Delta-G solvation = -3623.247796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.88949 -40.73956 -37.43220 -35.34140 -34.59270 -33.26320 -32.35600 -31.78349 -29.94943 -29.17014 -27.62908 -27.01287 -26.69307 -23.86555 -23.21579 -22.91471 -21.51037 -20.67830 -20.48329 -19.99933 -17.79128 -16.88375 -16.57376 -16.36384 -16.05963 -15.69276 -15.15591 -14.70629 -14.55481 -14.14638 -13.97485 -13.91888 -13.77227 -13.64556 -13.33440 -13.09488 -12.88500 -12.50006 -12.48381 -12.32059 -12.12835 -11.98506 -11.76680 -11.54116 -11.38215 -10.91837 -10.91592 -10.86220 -10.66284 -10.56904 -10.16321 -10.07051 -9.77217 -9.48564 -9.17641 -8.96324 -8.81740 -8.37504 -7.37230 -6.02730 -4.04982 1.11528 1.23841 1.82198 2.07620 2.79668 3.06446 3.30877 3.37140 3.40309 3.58196 4.00719 4.12509 4.36451 4.43640 4.54109 4.64053 4.71322 4.77194 4.79877 4.90261 4.94643 5.05412 5.09672 5.20868 5.24544 5.33065 5.33985 5.36500 5.39337 5.46088 5.64138 5.68246 5.78076 5.84716 5.95598 6.00023 6.09152 6.18323 6.24887 6.45157 6.54723 6.61228 6.69151 6.75348 6.96282 7.03182 7.29909 7.62677 7.75859 7.96476 8.39033 8.94742 9.01512 9.59284 11.08460 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.022382 B = 0.002195 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.679137 B =12751.508103 C =12969.002536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.123 4.123 3 C -0.084 4.084 4 C -0.137 4.137 5 C 0.181 3.819 6 C -0.151 4.151 7 C -0.073 4.073 8 C -0.080 4.080 9 C 0.112 3.888 10 N -0.528 5.528 11 C 0.424 3.576 12 N -0.324 5.324 13 N -0.281 5.281 14 C 0.201 3.799 15 C -0.033 4.033 16 C -0.102 4.102 17 C 0.023 3.977 18 C -0.520 4.520 19 H 0.054 0.946 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.892 3.108 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.275 1.275 26 N -0.496 5.496 27 C 0.067 3.933 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.126 0.874 32 H 0.144 0.856 33 H 0.122 0.878 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.021 0.979 43 H 0.016 0.984 44 H 0.261 0.739 45 H 0.082 0.918 46 H 0.100 0.900 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.601 -15.567 8.239 29.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.125 4.125 3 C -0.103 4.103 4 C -0.159 4.159 5 C 0.084 3.916 6 C -0.156 4.156 7 C -0.091 4.091 8 C -0.117 4.117 9 C -0.010 4.010 10 N -0.238 5.238 11 C 0.070 3.930 12 N -0.170 5.170 13 N -0.118 5.118 14 C -0.067 4.067 15 C -0.073 4.073 16 C -0.141 4.141 17 C -0.015 4.015 18 C -0.559 4.559 19 H 0.072 0.928 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.719 3.281 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.200 1.200 26 N -0.195 5.195 27 C -0.076 4.076 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.144 0.856 32 H 0.162 0.838 33 H 0.140 0.860 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.039 0.961 43 H 0.035 0.965 44 H 0.070 0.930 45 H 0.100 0.900 46 H 0.118 0.882 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -23.974 -14.235 8.401 29.120 hybrid contribution 1.271 -1.200 -1.151 2.093 sum -22.704 -15.435 7.250 28.395 Atomic orbital electron populations 1.20676 0.91066 1.02484 1.02037 1.19705 0.95958 0.92805 1.04027 1.20781 0.92974 0.97727 0.98797 1.20942 0.93854 0.97360 1.03703 1.18037 0.80769 0.94949 0.97894 1.19753 0.93692 0.93371 1.08745 1.20108 0.91253 0.97753 1.00015 1.21034 0.90452 0.96298 1.03891 1.22252 0.98735 0.77723 1.02336 1.42703 1.01273 1.03127 1.76730 1.20530 0.79345 0.89651 1.03460 1.74510 1.19024 0.98052 1.25382 1.74056 0.93716 1.25316 1.18717 1.25126 0.99162 0.78874 1.03544 1.20348 0.82529 1.02948 1.01447 1.21655 1.00851 1.00699 0.90928 1.19103 0.88153 0.97002 0.97192 1.21217 0.94691 1.47303 0.92667 0.92753 1.25009 0.96677 0.95452 0.97272 1.69952 1.02938 1.48496 1.32029 0.86603 0.77599 0.78568 0.85286 1.20575 1.21228 1.19965 1.46005 1.05165 1.09254 1.59028 1.22290 0.98626 0.82738 1.03911 0.91537 0.91880 0.91686 0.85566 0.83804 0.85992 0.89062 0.89026 0.90397 0.90296 0.88367 0.90488 0.93655 0.92400 0.96105 0.96522 0.92979 0.89969 0.88152 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.02 36.01 0.36 -0.31 16 2 C -0.12 -1.12 5.88 -104.60 -0.62 -1.74 16 3 C -0.08 -0.89 9.68 -39.71 -0.38 -1.27 16 4 C -0.14 -1.79 9.62 -39.20 -0.38 -2.17 16 5 C 0.18 2.30 6.65 -83.62 -0.56 1.74 16 6 C -0.15 -1.50 6.23 -104.26 -0.65 -2.15 16 7 C -0.07 -0.64 9.70 -39.61 -0.38 -1.03 16 8 C -0.08 -0.54 6.94 -27.24 -0.19 -0.73 16 9 C 0.11 0.90 5.54 -3.64 -0.02 0.88 16 10 N -0.53 -6.71 3.24 -114.26 -0.37 -7.08 16 11 C 0.42 6.64 8.55 -318.71 -2.73 3.92 16 12 N -0.32 -6.00 10.21 30.34 0.31 -5.69 16 13 N -0.28 -5.48 12.18 32.99 0.40 -5.07 16 14 C 0.20 3.43 7.32 -154.04 -1.13 2.30 16 15 C -0.03 -0.55 5.58 -27.88 -0.16 -0.71 16 16 C -0.10 -2.07 5.14 -26.73 -0.14 -2.21 16 17 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 18 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 19 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 22 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 26 N -0.50 -7.14 3.21 -121.43 -0.39 -7.53 16 27 C 0.07 0.64 9.93 59.85 0.59 1.23 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 30 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.14 2.15 6.44 -52.49 -0.34 1.82 16 33 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.51 7.02 -51.93 -0.36 0.14 16 37 H 0.08 0.54 7.46 -51.93 -0.39 0.16 16 38 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 39 H 0.08 1.11 7.19 -51.93 -0.37 0.74 16 40 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.10 0.87 7.12 -51.93 -0.37 0.50 16 47 H 0.08 0.57 5.30 -51.93 -0.27 0.30 16 LS Contribution 381.44 15.07 5.75 5.75 Total: -1.00 -34.68 381.44 -12.64 -47.32 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -7.14 Total: -3.34 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -6.92 Total: -15.19 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 0.69 Total: -51.13 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.68 -12.64 -47.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350633843.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.831 kcal (2) G-P(sol) polarization free energy of solvation -34.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds