Wall clock time and date at job start Tue Mar 31 2020 14:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38309 * 120.08178 * 2 1 4 4 C 1.37827 * 120.23080 * 179.97438 * 3 2 1 5 5 C 1.39676 * 120.27688 * 359.97121 * 4 3 2 6 6 C 1.38600 * 119.03684 * 0.02852 * 5 4 3 7 7 C 1.38173 * 120.46677 * 359.97438 * 6 5 4 8 8 C 1.51219 * 108.54649 * 180.02562 * 6 5 4 9 9 C 1.53743 * 104.55227 * 359.97438 * 8 6 5 10 10 N 1.39667 * 129.32951 * 179.72535 * 5 4 3 11 11 C 1.38673 * 124.96353 * 359.96102 * 10 5 4 12 12 N 1.31220 * 126.47055 * 4.98025 * 11 10 5 13 13 N 1.28536 * 109.85154 * 179.85575 * 12 11 10 14 14 C 1.30315 * 110.04919 * 0.41287 * 13 12 11 15 15 C 1.50705 * 126.34285 * 179.70852 * 14 13 12 16 16 C 1.52997 * 109.47297 * 270.04896 * 15 14 13 17 17 C 1.52997 * 109.46842 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47308 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99725 * 359.97438 * 18 17 16 20 20 C 1.37869 * 120.00313 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00416 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00103 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47184 * 89.99498 * 22 20 18 24 24 H 1.48497 * 109.47199 * 210.00059 * 22 20 18 25 25 H 1.48504 * 109.47102 * 330.00263 * 22 20 18 26 26 N 1.36474 * 126.47597 * 185.28690 * 11 10 5 27 27 C 1.46501 * 127.13727 * 359.97438 * 26 11 10 28 28 H 1.08998 * 109.46897 * 90.00325 * 1 2 3 29 29 H 1.09003 * 109.46838 * 210.00013 * 1 2 3 30 30 H 1.08999 * 109.47224 * 330.00440 * 1 2 3 31 31 H 1.08001 * 119.88176 * 359.95089 * 3 2 1 32 32 H 1.08001 * 119.86019 * 180.02562 * 4 3 2 33 33 H 1.07999 * 119.92033 * 180.02562 * 7 6 5 34 34 H 1.08997 * 110.42146 * 118.77121 * 8 6 5 35 35 H 1.09005 * 110.41456 * 241.23009 * 8 6 5 36 36 H 1.08999 * 110.29936 * 118.93261 * 9 8 6 37 37 H 1.09000 * 110.29750 * 241.07393 * 9 8 6 38 38 H 1.09000 * 109.46765 * 30.05368 * 15 14 13 39 39 H 1.08994 * 109.46784 * 150.04753 * 15 14 13 40 40 H 1.08995 * 109.47217 * 299.99700 * 16 15 14 41 41 H 1.09001 * 109.46961 * 60.00062 * 16 15 14 42 42 H 1.08999 * 109.47813 * 299.99774 * 17 16 15 43 43 H 1.09001 * 109.47142 * 60.00356 * 17 16 15 44 44 H 0.96993 * 120.00299 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.46998 * 85.30564 * 27 26 11 46 46 H 1.08999 * 109.47628 * 205.30910 * 27 26 11 47 47 H 1.09002 * 109.46899 * 325.30846 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2003 1.1968 0.0000 4 6 3.5785 1.2004 0.0005 5 6 4.2859 -0.0040 0.0017 6 6 3.5817 -1.1978 0.0017 7 6 2.1999 -1.1961 0.0011 8 6 4.5721 -2.3405 0.0037 9 6 5.9496 -1.6578 0.0042 10 7 5.6657 -0.2202 -0.0028 11 6 6.6267 0.7796 -0.0103 12 7 6.4097 2.0707 0.0772 13 7 7.5273 2.7046 0.0416 14 6 8.5147 1.8627 -0.0786 15 6 9.9789 2.2096 -0.1621 16 6 10.3721 2.4135 -1.6266 17 6 11.8585 2.7662 -1.7111 18 6 12.2460 2.9665 -3.1537 19 1 11.5062 2.8531 -3.9323 20 6 13.5451 3.2935 -3.4795 21 7 14.4462 3.4311 -2.5315 22 14 14.0256 3.5410 -5.2677 23 1 13.8364 4.9665 -5.6383 24 1 15.4503 3.1659 -5.4539 25 1 13.1718 2.6874 -6.1324 26 7 7.9763 0.6068 -0.1160 27 6 8.6984 -0.6615 -0.2429 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6597 2.1318 -0.0008 32 1 4.1138 2.1384 0.0009 33 1 1.6601 -2.1315 0.0015 34 1 4.4486 -2.9493 0.8993 35 1 4.4506 -2.9505 -0.8915 36 1 6.5073 -1.9321 0.8996 37 1 6.5087 -1.9338 -0.8898 38 1 10.1674 3.1268 0.3959 39 1 10.5693 1.3980 0.2630 40 1 10.1837 1.4963 -2.1844 41 1 9.7817 3.2252 -2.0516 42 1 12.0466 3.6836 -1.1534 43 1 12.4492 1.9549 -1.2859 44 1 15.3602 3.6608 -2.7608 45 1 8.7325 -0.9568 -1.2916 46 1 9.7141 -0.5407 0.1338 47 1 8.1858 -1.4308 0.3347 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350633843.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:38 Heat of formation + Delta-G solvation = 90.054780 kcal Electronic energy + Delta-G solvation = -26703.082901 eV Core-core repulsion = 23079.165001 eV Total energy + Delta-G solvation = -3623.917901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.07926 -41.51905 -38.20986 -36.82897 -35.89315 -34.62667 -33.74224 -32.61464 -31.17674 -30.18571 -28.57895 -28.44712 -27.43000 -25.64859 -23.99654 -23.82089 -22.71455 -21.99556 -21.57005 -21.12694 -18.77720 -18.41065 -17.85440 -17.55855 -16.98941 -16.58340 -16.43686 -15.90901 -15.81429 -15.40230 -15.29324 -14.62445 -14.53074 -14.41368 -14.38714 -14.08585 -13.95556 -13.78119 -13.39979 -13.27461 -13.09146 -13.01708 -12.82814 -12.69509 -12.66641 -12.59200 -12.44150 -12.31100 -11.75954 -11.64551 -11.60599 -11.44894 -11.30225 -11.25772 -11.01136 -10.54576 -9.95415 -9.72159 -8.30367 -8.19600 -6.29903 0.25814 0.44326 0.80814 0.96789 1.39386 1.40825 1.51135 1.80222 1.89792 2.40808 2.80752 3.13414 3.28829 3.39909 3.47374 3.63659 3.83700 3.97241 4.03389 4.09808 4.15487 4.18923 4.26980 4.34991 4.40987 4.45383 4.51682 4.53818 4.58207 4.71672 4.80128 4.88630 4.91796 4.94483 4.98183 5.03352 5.07207 5.13376 5.18503 5.22679 5.37032 5.44884 5.51032 5.61998 5.71277 5.74269 5.77413 5.85697 6.15953 6.25475 6.29819 6.85643 7.38670 7.70371 8.91328 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.022382 B = 0.002195 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.679137 B =12751.508103 C =12969.002536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.120 4.120 3 C -0.097 4.097 4 C -0.166 4.166 5 C 0.143 3.857 6 C -0.145 4.145 7 C -0.074 4.074 8 C -0.072 4.072 9 C 0.100 3.900 10 N -0.531 5.531 11 C 0.431 3.569 12 N -0.367 5.367 13 N -0.321 5.321 14 C 0.192 3.808 15 C -0.020 4.020 16 C -0.084 4.084 17 C 0.028 3.972 18 C -0.544 4.544 19 H 0.053 0.947 20 C 0.003 3.997 21 N -0.928 5.928 22 Si 0.960 3.040 23 H -0.276 1.276 24 H -0.279 1.279 25 H -0.266 1.266 26 N -0.491 5.491 27 C 0.055 3.945 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.134 0.866 32 H 0.112 0.888 33 H 0.156 0.844 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.052 0.948 41 H 0.037 0.963 42 H -0.004 1.004 43 H 0.009 0.991 44 H 0.264 0.736 45 H 0.091 0.909 46 H 0.110 0.890 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.990 -19.165 7.756 32.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.122 4.122 3 C -0.115 4.115 4 C -0.188 4.188 5 C 0.046 3.954 6 C -0.149 4.149 7 C -0.092 4.092 8 C -0.109 4.109 9 C -0.020 4.020 10 N -0.243 5.243 11 C 0.075 3.925 12 N -0.213 5.213 13 N -0.159 5.159 14 C -0.077 4.077 15 C -0.059 4.059 16 C -0.123 4.123 17 C -0.010 4.010 18 C -0.582 4.582 19 H 0.071 0.929 20 C -0.195 4.195 21 N -0.568 5.568 22 Si 0.784 3.216 23 H -0.202 1.202 24 H -0.204 1.204 25 H -0.190 1.190 26 N -0.189 5.189 27 C -0.085 4.085 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.152 0.848 32 H 0.130 0.870 33 H 0.173 0.827 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.123 0.877 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.015 0.985 43 H 0.027 0.973 44 H 0.073 0.927 45 H 0.110 0.890 46 H 0.129 0.871 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -25.388 -17.878 7.919 32.045 hybrid contribution 1.569 -0.136 -0.975 1.852 sum -23.819 -18.014 6.944 30.661 Atomic orbital electron populations 1.20737 0.88822 1.03634 1.02916 1.20105 0.97595 0.92311 1.02181 1.20954 0.92171 0.99188 0.99228 1.20918 0.95072 0.96792 1.06012 1.18376 0.81178 0.95864 0.99945 1.20195 0.94456 0.93443 1.06809 1.20543 0.91049 0.98907 0.98687 1.21169 0.88204 0.95295 1.06206 1.22679 1.00297 0.75094 1.03978 1.43095 1.00781 1.04093 1.76282 1.20753 0.80410 0.89715 1.01590 1.74416 1.19024 0.99996 1.27864 1.73940 0.94698 1.27186 1.20035 1.24951 0.98649 0.79989 1.04108 1.20128 0.83002 1.03911 0.98871 1.21343 0.97301 1.00111 0.93562 1.18984 0.91011 0.95517 0.95451 1.21642 0.95052 1.47417 0.94087 0.92905 1.25882 0.96694 0.95068 1.01841 1.70063 1.03351 1.49177 1.34204 0.85533 0.77555 0.78595 0.79876 1.20183 1.20386 1.19034 1.46129 1.04742 1.09807 1.58246 1.22721 0.99150 0.81350 1.05316 0.90654 0.90057 0.91291 0.84772 0.87024 0.82651 0.86499 0.86763 0.88506 0.88840 0.88906 0.87737 0.92884 0.94385 0.98511 0.97310 0.92716 0.89010 0.87140 0.86563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 10.02 71.24 0.71 -0.33 16 2 C -0.12 -1.99 5.88 -19.85 -0.12 -2.11 16 3 C -0.10 -2.10 9.68 22.19 0.21 -1.88 16 4 C -0.17 -4.65 9.62 22.52 0.22 -4.43 16 5 C 0.14 3.62 6.65 38.33 0.25 3.88 16 6 C -0.14 -2.53 6.23 -19.63 -0.12 -2.65 16 7 C -0.07 -1.08 9.70 22.25 0.22 -0.86 16 8 C -0.07 -0.68 6.94 30.26 0.21 -0.47 16 9 C 0.10 1.31 5.54 86.62 0.48 1.79 16 10 N -0.53 -13.13 3.24 -515.40 -1.67 -14.80 16 11 C 0.43 13.72 8.55 260.05 2.22 15.94 16 12 N -0.37 -14.46 10.21 -57.93 -0.59 -15.05 16 13 N -0.32 -13.24 12.18 -49.55 -0.60 -13.85 16 14 C 0.19 6.71 7.32 137.65 1.01 7.72 16 15 C -0.02 -0.66 5.58 29.85 0.17 -0.49 16 16 C -0.08 -3.47 5.14 30.59 0.16 -3.32 16 17 C 0.03 1.41 4.97 29.85 0.15 1.56 16 18 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 19 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 20 C 0.00 0.19 5.46 84.65 0.46 0.65 16 21 N -0.93 -55.50 13.29 21.44 0.28 -55.21 16 22 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 26 N -0.49 -13.89 3.21 -538.08 -1.73 -15.61 16 27 C 0.06 0.92 9.93 127.77 1.27 2.19 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.08 0.54 8.09 -2.39 -0.02 0.53 16 30 H 0.07 0.65 8.09 -2.39 -0.02 0.63 16 31 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.11 3.78 6.44 -2.91 -0.02 3.77 16 33 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 34 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.10 0.89 7.02 -2.39 -0.02 0.87 16 37 H 0.09 0.95 7.46 -2.39 -0.02 0.93 16 38 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 39 H 0.10 2.91 7.19 -2.39 -0.02 2.89 16 40 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 43 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 45 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.11 1.63 7.12 -2.39 -0.02 1.62 16 47 H 0.12 1.16 5.30 -2.39 -0.01 1.15 16 Total: -1.00 -79.39 381.44 6.42 -72.97 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 0.97 Total: 8.69 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 7.74 Total: -13.49 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -4.31 Total: -114.52 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -79.39 6.42 -72.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350633843.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.028 kcal (2) G-P(sol) polarization free energy of solvation -79.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds