Wall clock time and date at job start Tue Mar 31 2020 14:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38263 * 120.06361 * 2 1 4 4 C 1.38034 * 119.82988 * 180.11151 * 3 2 1 5 5 C 1.38672 * 120.34338 * 359.97278 * 4 3 2 6 6 C 1.37835 * 119.86053 * 359.85810 * 5 4 3 7 7 C 1.38019 * 120.06917 * 180.02562 * 2 1 3 8 8 C 1.50622 * 121.85301 * 180.30375 * 6 5 4 9 9 N 1.46626 * 110.50293 * 342.46130 * 8 6 5 10 10 C 1.38580 * 110.99852 * 175.90908 * 9 8 6 11 11 N 1.31217 * 126.47323 * 236.06485 * 10 9 8 12 12 N 1.28527 * 109.85848 * 179.97438 * 11 10 9 13 13 C 1.30292 * 110.05766 * 0.02562 * 12 11 10 14 14 C 1.50706 * 126.34831 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46953 * 90.02203 * 14 13 12 16 16 C 1.50706 * 109.46573 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00167 * 359.72054 * 16 15 14 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47405 * 60.00219 * 20 18 16 22 22 H 1.48503 * 109.46845 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47399 * 299.99813 * 20 18 16 24 24 N 1.36457 * 126.47178 * 56.35328 * 10 9 8 25 25 C 1.46500 * 127.13933 * 0.02562 * 24 10 9 26 26 C 1.47148 * 110.27580 * 52.47021 * 9 8 6 27 27 C 1.50722 * 118.48170 * 179.62376 * 5 4 3 28 28 H 1.08999 * 109.47087 * 90.00487 * 1 2 3 29 29 H 1.09004 * 109.46425 * 210.00094 * 1 2 3 30 30 H 1.08997 * 109.47328 * 330.00129 * 1 2 3 31 31 H 1.08001 * 120.08226 * 0.08147 * 3 2 1 32 32 H 1.07997 * 119.82923 * 180.02562 * 4 3 2 33 33 H 1.08003 * 119.80723 * 359.94849 * 7 2 1 34 34 H 1.09003 * 109.26731 * 222.19225 * 8 6 5 35 35 H 1.09005 * 109.26774 * 102.72356 * 8 6 5 36 36 H 1.09000 * 109.46974 * 330.01952 * 14 13 12 37 37 H 1.09001 * 109.46547 * 210.02042 * 14 13 12 38 38 H 1.09000 * 109.47486 * 60.00062 * 15 14 13 39 39 H 1.09001 * 109.47362 * 299.99339 * 15 14 13 40 40 H 0.96996 * 119.99730 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.47000 * 270.18051 * 25 24 10 42 42 H 1.08997 * 109.47282 * 30.18643 * 25 24 10 43 43 H 1.09002 * 109.46767 * 150.18113 * 25 24 10 44 44 H 1.09002 * 109.63145 * 48.46016 * 26 9 8 45 45 H 1.09005 * 109.63322 * 169.05361 * 26 9 8 46 46 H 1.09001 * 109.39248 * 283.37016 * 27 5 4 47 47 H 1.09001 * 109.39097 * 43.17884 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1996 1.1966 0.0000 4 6 3.5800 1.1910 -0.0023 5 6 4.2756 -0.0086 -0.0041 6 6 3.5858 -1.2019 -0.0006 7 6 2.1985 -1.1944 -0.0005 8 6 4.2957 -2.5304 0.0045 9 7 5.6930 -2.3676 -0.4089 10 6 6.3802 -3.5678 -0.3202 11 7 7.4784 -3.7892 0.3629 12 7 7.8410 -5.0141 0.2215 13 6 7.0030 -5.6416 -0.5541 14 6 7.0783 -7.0897 -0.9645 15 6 6.3138 -7.9467 0.0464 16 6 6.3887 -9.3947 -0.3645 17 1 6.9238 -9.6751 -1.2597 18 6 5.7695 -10.3610 0.3997 19 7 5.1132 -10.0190 1.4869 20 14 5.8630 -12.1559 -0.1091 21 1 7.2837 -12.5859 -0.1489 22 1 5.1208 -12.9878 0.8720 23 1 5.2580 -12.3210 -1.4552 24 7 6.0455 -4.7411 -0.9313 25 6 4.8970 -4.9860 -1.8072 26 6 6.3457 -1.3253 0.3991 27 6 5.7822 0.0342 -0.0153 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3632 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6620 2.1333 0.0013 32 1 4.1210 2.1257 -0.0019 33 1 1.6565 -2.1286 -0.0001 34 1 3.7933 -3.2093 -0.6847 35 1 4.2646 -2.9510 1.0096 36 1 8.1212 -7.4053 -0.9934 37 1 6.6346 -7.2107 -1.9527 38 1 5.2709 -7.6311 0.0752 39 1 6.7575 -7.8257 1.0346 40 1 4.6773 -10.6987 2.0243 41 1 4.0451 -5.3072 -1.2080 42 1 4.6428 -4.0687 -2.3381 43 1 5.1489 -5.7646 -2.5273 44 1 6.1416 -1.4995 1.4556 45 1 7.4212 -1.3451 0.2229 46 1 6.1298 0.2793 -1.0189 47 1 6.1278 0.7959 0.6836 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351094514.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:00 Heat of formation + Delta-G solvation = 98.830664 kcal Electronic energy + Delta-G solvation = -27138.249994 eV Core-core repulsion = 23514.712645 eV Total energy + Delta-G solvation = -3623.537350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.64622 -40.41517 -37.76199 -34.92996 -34.25319 -33.49785 -32.34859 -31.68601 -30.54201 -28.50916 -27.49349 -27.04893 -25.50381 -24.77700 -23.32189 -22.33672 -21.76323 -21.01551 -19.92317 -19.44262 -17.32215 -16.59186 -16.41746 -16.22961 -15.75692 -15.53039 -15.03521 -14.92281 -14.74337 -14.50566 -14.03339 -13.57411 -13.53527 -13.35529 -13.17347 -13.07519 -12.82236 -12.76516 -12.54737 -12.30103 -12.22223 -11.92141 -11.49345 -11.36905 -11.14593 -11.07294 -10.98613 -10.89609 -10.72452 -10.34526 -10.08768 -9.90256 -9.80651 -9.42186 -9.24496 -8.98112 -8.64072 -8.42503 -7.93313 -6.07019 -4.11288 1.07115 1.10949 2.07944 2.51300 3.22674 3.29705 3.34791 3.37109 3.42530 3.67931 4.28317 4.39768 4.41856 4.58787 4.69429 4.74430 4.78164 4.94395 5.04314 5.06572 5.10617 5.12558 5.17201 5.22332 5.28129 5.29011 5.31056 5.41136 5.43438 5.52798 5.54485 5.58772 5.73912 5.77912 5.81247 5.94262 6.06593 6.20941 6.32456 6.34206 6.38692 6.44578 6.61822 6.67058 6.74469 6.91895 7.39193 7.53459 7.67393 7.90298 8.27839 8.94672 9.19256 9.53379 11.04071 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016887 B = 0.002644 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.702460 B =10586.174663 C =11788.956649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.119 4.119 4 C -0.115 4.115 5 C -0.073 4.073 6 C -0.072 4.072 7 C -0.113 4.113 8 C 0.089 3.911 9 N -0.442 5.442 10 C 0.332 3.668 11 N -0.321 5.321 12 N -0.294 5.294 13 C 0.214 3.786 14 C -0.031 4.031 15 C 0.033 3.967 16 C -0.525 4.525 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.895 3.105 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.277 1.277 24 N -0.482 5.482 25 C 0.076 3.924 26 C 0.069 3.931 27 C -0.077 4.077 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.013 0.987 39 H 0.025 0.975 40 H 0.262 0.738 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.055 0.945 45 H 0.100 0.900 46 H 0.086 0.914 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.270 23.402 -5.748 25.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.137 4.137 4 C -0.133 4.133 5 C -0.073 4.073 6 C -0.072 4.072 7 C -0.131 4.131 8 C -0.038 4.038 9 N -0.166 5.166 10 C -0.024 4.024 11 N -0.166 5.166 12 N -0.133 5.133 13 C -0.054 4.054 14 C -0.071 4.071 15 C -0.006 4.006 16 C -0.563 4.563 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.531 5.531 20 Si 0.723 3.277 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.202 1.202 24 N -0.177 5.177 25 C -0.068 4.068 26 C -0.058 4.058 27 C -0.114 4.114 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.032 0.968 39 H 0.044 0.956 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.114 0.886 44 H 0.074 0.926 45 H 0.118 0.882 46 H 0.105 0.895 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.191 23.751 -5.206 25.356 hybrid contribution -1.333 -1.436 -0.347 1.990 sum -8.524 22.315 -5.553 24.525 Atomic orbital electron populations 1.20783 0.91089 1.02820 1.02352 1.19805 0.96070 0.92989 1.00037 1.20976 0.94133 0.97491 1.01138 1.21058 0.94175 0.97345 1.00730 1.19567 0.95675 0.92316 0.99730 1.19369 0.93390 0.93503 1.00964 1.20886 0.92943 0.98018 1.01253 1.21174 0.86492 0.95340 1.00827 1.58930 1.01983 1.01797 1.53841 1.22419 0.96806 0.85664 0.97530 1.74496 1.11549 1.10419 1.20106 1.73995 1.23758 0.98774 1.16730 1.25558 0.86742 0.95582 0.97502 1.20448 1.03792 0.82160 1.00659 1.19059 0.94499 0.93218 0.93788 1.21108 1.33860 0.91433 1.09904 0.92319 1.25011 0.95147 0.99202 0.94881 1.69960 1.34240 1.33844 1.15098 0.86613 0.78336 0.84571 0.78229 1.20045 1.21283 1.20213 1.46063 1.23715 1.08966 1.39001 1.22103 0.86819 1.03700 0.94135 1.22120 1.00074 0.88453 0.95190 1.20624 0.90864 0.96849 1.03080 0.91159 0.91463 0.91581 0.86098 0.85926 0.85907 0.88795 0.91996 0.89242 0.91223 0.96846 0.95639 0.92804 0.90199 0.89422 0.88583 0.92616 0.88158 0.89518 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.02 36.01 0.36 -0.37 16 2 C -0.09 -0.78 5.87 -104.69 -0.62 -1.39 16 3 C -0.12 -0.99 9.71 -39.65 -0.38 -1.38 16 4 C -0.12 -1.00 9.66 -39.50 -0.38 -1.38 16 5 C -0.07 -0.73 5.77 -104.60 -0.60 -1.34 16 6 C -0.07 -0.78 5.79 -104.62 -0.61 -1.39 16 7 C -0.11 -1.10 9.31 -39.48 -0.37 -1.47 16 8 C 0.09 1.07 4.97 -5.16 -0.03 1.04 16 9 N -0.44 -6.01 4.73 -176.01 -0.83 -6.84 16 10 C 0.33 5.67 7.18 -318.87 -2.29 3.39 16 11 N -0.32 -6.44 11.06 30.31 0.34 -6.11 16 12 N -0.29 -6.46 12.18 32.99 0.40 -6.06 16 13 C 0.21 4.28 7.32 -154.01 -1.13 3.15 16 14 C -0.03 -0.63 5.53 -27.88 -0.15 -0.78 16 15 C 0.03 0.82 4.96 -27.88 -0.14 0.69 16 16 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 20 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 24 N -0.48 -8.15 3.21 -121.46 -0.39 -8.54 16 25 C 0.08 0.94 9.37 59.85 0.56 1.50 16 26 C 0.07 0.82 5.12 -3.74 -0.02 0.81 16 27 C -0.08 -0.70 5.94 -27.93 -0.17 -0.87 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 30 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 31 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 34 H 0.09 1.03 5.56 -51.93 -0.29 0.75 16 35 H 0.06 0.83 8.11 -51.93 -0.42 0.41 16 36 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 37 H 0.07 1.25 7.26 -51.93 -0.38 0.87 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.08 0.95 7.92 -51.93 -0.41 0.53 16 42 H 0.09 0.89 7.54 -51.93 -0.39 0.50 16 43 H 0.10 1.11 7.25 -51.93 -0.38 0.73 16 44 H 0.06 0.71 8.05 -51.93 -0.42 0.29 16 45 H 0.10 1.28 7.57 -51.93 -0.39 0.88 16 46 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 380.90 15.07 5.74 5.74 Total: -1.00 -33.37 380.90 -12.66 -46.03 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -7.26 Total: -1.82 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -6.37 Total: -12.80 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.25 Total: -53.23 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.37 -12.66 -46.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351094514.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.865 kcal (2) G-P(sol) polarization free energy of solvation -33.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds