Wall clock time and date at job start Tue Mar 31 2020 14:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38263 * 120.06361 * 2 1 4 4 C 1.38034 * 119.82988 * 180.11151 * 3 2 1 5 5 C 1.38672 * 120.34338 * 359.97278 * 4 3 2 6 6 C 1.37835 * 119.86053 * 359.85810 * 5 4 3 7 7 C 1.38019 * 120.06917 * 180.02562 * 2 1 3 8 8 C 1.50622 * 121.85301 * 180.30375 * 6 5 4 9 9 N 1.46626 * 110.50293 * 342.46130 * 8 6 5 10 10 C 1.38580 * 110.99852 * 175.90908 * 9 8 6 11 11 N 1.31217 * 126.47323 * 236.06485 * 10 9 8 12 12 N 1.28527 * 109.85848 * 179.97438 * 11 10 9 13 13 C 1.30292 * 110.05766 * 0.02562 * 12 11 10 14 14 C 1.50706 * 126.34831 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46953 * 90.02203 * 14 13 12 16 16 C 1.50706 * 109.46573 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00167 * 359.72054 * 16 15 14 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47405 * 60.00219 * 20 18 16 22 22 H 1.48503 * 109.46845 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47399 * 299.99813 * 20 18 16 24 24 N 1.36457 * 126.47178 * 56.35328 * 10 9 8 25 25 C 1.46500 * 127.13933 * 0.02562 * 24 10 9 26 26 C 1.47148 * 110.27580 * 52.47021 * 9 8 6 27 27 C 1.50722 * 118.48170 * 179.62376 * 5 4 3 28 28 H 1.08999 * 109.47087 * 90.00487 * 1 2 3 29 29 H 1.09004 * 109.46425 * 210.00094 * 1 2 3 30 30 H 1.08997 * 109.47328 * 330.00129 * 1 2 3 31 31 H 1.08001 * 120.08226 * 0.08147 * 3 2 1 32 32 H 1.07997 * 119.82923 * 180.02562 * 4 3 2 33 33 H 1.08003 * 119.80723 * 359.94849 * 7 2 1 34 34 H 1.09003 * 109.26731 * 222.19225 * 8 6 5 35 35 H 1.09005 * 109.26774 * 102.72356 * 8 6 5 36 36 H 1.09000 * 109.46974 * 330.01952 * 14 13 12 37 37 H 1.09001 * 109.46547 * 210.02042 * 14 13 12 38 38 H 1.09000 * 109.47486 * 60.00062 * 15 14 13 39 39 H 1.09001 * 109.47362 * 299.99339 * 15 14 13 40 40 H 0.96996 * 119.99730 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.47000 * 270.18051 * 25 24 10 42 42 H 1.08997 * 109.47282 * 30.18643 * 25 24 10 43 43 H 1.09002 * 109.46767 * 150.18113 * 25 24 10 44 44 H 1.09002 * 109.63145 * 48.46016 * 26 9 8 45 45 H 1.09005 * 109.63322 * 169.05361 * 26 9 8 46 46 H 1.09001 * 109.39248 * 283.37016 * 27 5 4 47 47 H 1.09001 * 109.39097 * 43.17884 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1996 1.1966 0.0000 4 6 3.5800 1.1910 -0.0023 5 6 4.2756 -0.0086 -0.0041 6 6 3.5858 -1.2019 -0.0006 7 6 2.1985 -1.1944 -0.0005 8 6 4.2957 -2.5304 0.0045 9 7 5.6930 -2.3676 -0.4089 10 6 6.3802 -3.5678 -0.3202 11 7 7.4784 -3.7892 0.3629 12 7 7.8410 -5.0141 0.2215 13 6 7.0030 -5.6416 -0.5541 14 6 7.0783 -7.0897 -0.9645 15 6 6.3138 -7.9467 0.0464 16 6 6.3887 -9.3947 -0.3645 17 1 6.9238 -9.6751 -1.2597 18 6 5.7695 -10.3610 0.3997 19 7 5.1132 -10.0190 1.4869 20 14 5.8630 -12.1559 -0.1091 21 1 7.2837 -12.5859 -0.1489 22 1 5.1208 -12.9878 0.8720 23 1 5.2580 -12.3210 -1.4552 24 7 6.0455 -4.7411 -0.9313 25 6 4.8970 -4.9860 -1.8072 26 6 6.3457 -1.3253 0.3991 27 6 5.7822 0.0342 -0.0153 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3632 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6620 2.1333 0.0013 32 1 4.1210 2.1257 -0.0019 33 1 1.6565 -2.1286 -0.0001 34 1 3.7933 -3.2093 -0.6847 35 1 4.2646 -2.9510 1.0096 36 1 8.1212 -7.4053 -0.9934 37 1 6.6346 -7.2107 -1.9527 38 1 5.2709 -7.6311 0.0752 39 1 6.7575 -7.8257 1.0346 40 1 4.6773 -10.6987 2.0243 41 1 4.0451 -5.3072 -1.2080 42 1 4.6428 -4.0687 -2.3381 43 1 5.1489 -5.7646 -2.5273 44 1 6.1416 -1.4995 1.4556 45 1 7.4212 -1.3451 0.2229 46 1 6.1298 0.2793 -1.0189 47 1 6.1278 0.7959 0.6836 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351094514.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:58 Heat of formation + Delta-G solvation = 82.722299 kcal Electronic energy + Delta-G solvation = -27138.948505 eV Core-core repulsion = 23514.712645 eV Total energy + Delta-G solvation = -3624.235861 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 3.18 seconds Orbital eigenvalues (eV) -44.07761 -41.22833 -38.70013 -36.43696 -35.76435 -34.64266 -33.55445 -33.03816 -31.43226 -30.00072 -28.68265 -27.86526 -27.12984 -25.92027 -24.32081 -23.55289 -23.01734 -22.21304 -21.43110 -20.34140 -18.70115 -18.32010 -17.57165 -17.43404 -16.78832 -16.63083 -16.39412 -15.98933 -15.76321 -15.56567 -15.12481 -14.91143 -14.63160 -14.42565 -14.30699 -14.16794 -14.04056 -13.72616 -13.56971 -13.33939 -13.23593 -12.97230 -12.82387 -12.70875 -12.66141 -12.48853 -12.16180 -12.04904 -11.87597 -11.79646 -11.70806 -11.53154 -11.34273 -11.18520 -10.82254 -10.56564 -9.74671 -9.35460 -9.29619 -8.20503 -6.32897 0.35812 0.43063 0.69094 1.22018 1.43377 1.46646 1.54056 1.72595 2.41953 2.49293 2.74905 3.13869 3.37573 3.51585 3.61260 3.75050 3.85159 3.94712 4.01012 4.07612 4.10235 4.13161 4.20528 4.24244 4.34550 4.44115 4.49361 4.54406 4.60887 4.66697 4.74158 4.79044 4.84468 4.87495 4.89936 4.91895 4.98776 5.06398 5.13126 5.29641 5.36278 5.43856 5.47977 5.56173 5.59879 5.67526 5.68873 5.78075 6.05739 6.12012 6.16713 6.82977 7.37242 7.69721 8.91407 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016887 B = 0.002644 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.702460 B =10586.174663 C =11788.956649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.095 4.095 3 C -0.121 4.121 4 C -0.116 4.116 5 C -0.087 4.087 6 C -0.091 4.091 7 C -0.124 4.124 8 C 0.093 3.907 9 N -0.434 5.434 10 C 0.347 3.653 11 N -0.354 5.354 12 N -0.331 5.331 13 C 0.199 3.801 14 C -0.014 4.014 15 C 0.044 3.956 16 C -0.539 4.539 17 H 0.073 0.927 18 C 0.001 3.999 19 N -0.935 5.935 20 Si 0.968 3.032 21 H -0.268 1.268 22 H -0.288 1.288 23 H -0.260 1.260 24 N -0.480 5.480 25 C 0.067 3.933 26 C 0.066 3.934 27 C -0.067 4.067 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.128 0.872 34 H 0.103 0.897 35 H 0.041 0.959 36 H 0.089 0.911 37 H 0.099 0.901 38 H -0.005 1.005 39 H -0.019 1.019 40 H 0.263 0.737 41 H 0.084 0.916 42 H 0.114 0.886 43 H 0.109 0.891 44 H 0.043 0.957 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.632 24.709 -7.671 27.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 C -0.139 4.139 4 C -0.134 4.134 5 C -0.087 4.087 6 C -0.091 4.091 7 C -0.143 4.143 8 C -0.034 4.034 9 N -0.158 5.158 10 C -0.011 4.011 11 N -0.199 5.199 12 N -0.169 5.169 13 C -0.070 4.070 14 C -0.054 4.054 15 C 0.006 3.994 16 C -0.577 4.577 17 H 0.092 0.908 18 C -0.197 4.197 19 N -0.575 5.575 20 Si 0.792 3.208 21 H -0.193 1.193 22 H -0.214 1.214 23 H -0.185 1.185 24 N -0.174 5.174 25 C -0.075 4.075 26 C -0.060 4.060 27 C -0.104 4.104 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.163 0.837 32 H 0.164 0.836 33 H 0.146 0.854 34 H 0.121 0.879 35 H 0.059 0.941 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.013 0.987 39 H -0.001 1.001 40 H 0.072 0.928 41 H 0.103 0.897 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.062 0.938 45 H 0.109 0.891 46 H 0.113 0.887 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.564 25.076 -7.154 27.447 hybrid contribution -0.989 -1.702 0.276 1.988 sum -9.553 23.375 -6.879 26.172 Atomic orbital electron populations 1.20823 0.89503 1.03517 1.03089 1.20128 0.97358 0.92787 0.99272 1.21335 0.94257 0.98330 0.99935 1.21333 0.94574 0.97636 0.99819 1.19734 0.96030 0.92684 1.00266 1.19342 0.93920 0.92949 1.02901 1.21036 0.92633 0.98972 1.01618 1.21162 0.85520 0.96823 0.99846 1.59119 1.02594 1.00298 1.53802 1.22806 0.95946 0.86563 0.95754 1.74396 1.13565 1.09989 1.21924 1.73883 1.25431 0.99870 1.17760 1.25338 0.87774 0.95768 0.98097 1.20166 1.03148 0.81667 1.00427 1.18825 0.93663 0.93950 0.93009 1.21574 1.33523 0.92316 1.10311 0.90843 1.25995 0.94670 1.04298 0.94748 1.70115 1.35442 1.35444 1.16522 0.85458 0.78602 0.78390 0.78357 1.19280 1.21360 1.18466 1.46221 1.23983 1.08182 1.39037 1.22465 0.85416 1.05627 0.93948 1.22210 0.99718 0.89656 0.94447 1.20606 0.90482 0.95208 1.04070 0.90309 0.91425 0.90290 0.83699 0.83562 0.85402 0.87880 0.94074 0.89293 0.88276 0.98650 1.00051 0.92812 0.89698 0.86796 0.87272 0.93814 0.89137 0.88746 0.87163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.02 71.24 0.71 -0.47 16 2 C -0.10 -1.47 5.87 -19.91 -0.12 -1.59 16 3 C -0.12 -1.66 9.71 22.23 0.22 -1.45 16 4 C -0.12 -1.69 9.66 22.32 0.22 -1.47 16 5 C -0.09 -1.61 5.77 -19.85 -0.11 -1.72 16 6 C -0.09 -1.90 5.79 -19.87 -0.12 -2.01 16 7 C -0.12 -2.29 9.31 22.34 0.21 -2.08 16 8 C 0.09 2.25 4.97 85.58 0.43 2.67 16 9 N -0.43 -11.78 4.73 -710.76 -3.36 -15.14 16 10 C 0.35 12.05 7.18 260.11 1.87 13.91 16 11 N -0.35 -14.76 11.06 -58.00 -0.64 -15.41 16 12 N -0.33 -15.13 12.18 -49.53 -0.60 -15.74 16 13 C 0.20 8.17 7.32 137.64 1.01 9.18 16 14 C -0.01 -0.59 5.53 29.85 0.17 -0.43 16 15 C 0.04 2.29 4.96 29.85 0.15 2.44 16 16 C -0.54 -29.45 9.11 25.60 0.23 -29.22 16 17 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 18 C 0.00 0.05 5.46 84.66 0.46 0.51 16 19 N -0.94 -56.64 13.29 21.45 0.28 -56.35 16 20 Si 0.97 43.08 29.54 68.60 2.03 45.10 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 22 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 24 N -0.48 -16.27 3.21 -538.17 -1.73 -17.99 16 25 C 0.07 1.57 9.37 127.77 1.20 2.77 16 26 C 0.07 1.60 5.12 86.22 0.44 2.04 16 27 C -0.07 -1.12 5.94 29.82 0.18 -0.94 16 28 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.70 8.09 -2.38 -0.02 0.69 16 30 H 0.08 0.63 8.09 -2.39 -0.02 0.61 16 31 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 32 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 33 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 34 H 0.10 2.22 5.56 -2.39 -0.01 2.21 16 35 H 0.04 1.15 8.11 -2.38 -0.02 1.14 16 36 H 0.09 3.63 8.14 -2.39 -0.02 3.62 16 37 H 0.10 3.43 7.26 -2.39 -0.02 3.42 16 38 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 40 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 41 H 0.08 1.94 7.92 -2.39 -0.02 1.92 16 42 H 0.11 2.08 7.54 -2.39 -0.02 2.06 16 43 H 0.11 2.31 7.25 -2.39 -0.02 2.29 16 44 H 0.04 1.15 8.05 -2.39 -0.02 1.13 16 45 H 0.09 2.36 7.57 -2.38 -0.02 2.34 16 46 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -74.43 380.90 4.07 -70.36 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.96 Total: 13.02 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: 7.13 Total: -7.85 kcal Atomic # 7 Polarization: -114.58 SS G_CDS: -6.05 Total: -120.63 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -74.43 4.07 -70.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351094514.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.079 kcal (2) G-P(sol) polarization free energy of solvation -74.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.18 seconds