Wall clock time and date at job start Tue Mar 31 2020 14:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38290 * 119.91943 * 2 1 4 4 C 1.38270 * 119.83251 * 179.97438 * 3 2 1 5 5 C 1.37868 * 120.22870 * 359.51626 * 4 3 2 6 6 C 1.39634 * 120.28004 * 0.02562 * 5 4 3 7 7 C 1.38126 * 119.92840 * 179.19622 * 2 1 3 8 8 C 1.51216 * 130.98850 * 359.97438 * 7 2 1 9 9 C 1.53748 * 104.55513 * 179.97438 * 8 7 2 10 10 N 1.39664 * 129.33691 * 180.02562 * 6 5 4 11 11 C 1.38671 * 124.95747 * 359.97017 * 10 6 5 12 12 N 1.31223 * 126.47836 * 359.70201 * 11 10 6 13 13 N 1.28530 * 109.85273 * 179.75292 * 12 11 10 14 14 C 1.30321 * 110.05081 * 0.44264 * 13 12 11 15 15 C 1.50698 * 126.33831 * 179.82304 * 14 13 12 16 16 H 1.09001 * 109.47122 * 179.69637 * 15 14 13 17 17 C 1.53006 * 109.47184 * 59.69751 * 15 14 13 18 18 C 1.52997 * 109.47342 * 299.69527 * 15 14 13 19 19 C 1.50706 * 109.47267 * 185.00359 * 18 15 14 20 20 H 1.08007 * 119.99917 * 359.97438 * 19 18 15 21 21 C 1.37873 * 119.99976 * 179.97438 * 19 18 15 22 22 N 1.31509 * 120.00138 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99638 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47024 * 60.00318 * 23 21 19 25 25 H 1.48503 * 109.46994 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47732 * 300.00016 * 23 21 19 27 27 N 1.36483 * 126.46989 * 179.72012 * 11 10 6 28 28 C 1.46502 * 127.13777 * 359.96431 * 27 11 10 29 29 H 1.09001 * 109.47028 * 270.80336 * 1 2 3 30 30 H 1.08995 * 109.47373 * 30.80387 * 1 2 3 31 31 H 1.09002 * 109.46913 * 150.80431 * 1 2 3 32 32 H 1.07996 * 120.08210 * 359.43107 * 3 2 1 33 33 H 1.08004 * 119.88199 * 179.49084 * 4 3 2 34 34 H 1.08007 * 119.85877 * 180.02562 * 5 4 3 35 35 H 1.08999 * 110.42162 * 61.22669 * 8 7 2 36 36 H 1.08995 * 110.42213 * 298.76400 * 8 7 2 37 37 H 1.09001 * 110.29691 * 241.07282 * 9 8 7 38 38 H 1.08994 * 110.30011 * 118.92910 * 9 8 7 39 39 H 1.09001 * 109.47002 * 299.99404 * 17 15 14 40 40 H 1.08993 * 109.46955 * 59.99842 * 17 15 14 41 41 H 1.09000 * 109.47050 * 179.97438 * 17 15 14 42 42 H 1.09000 * 109.47278 * 304.99798 * 18 15 14 43 43 H 1.08994 * 109.47510 * 65.00307 * 18 15 14 44 44 H 0.97005 * 119.99650 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.46621 * 270.01967 * 28 27 11 46 46 H 1.08997 * 109.47082 * 30.01829 * 28 27 11 47 47 H 1.09002 * 109.46806 * 150.02318 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1967 1.1986 0.0000 4 6 3.5794 1.1965 0.0005 5 6 4.2717 0.0043 0.0111 6 6 3.5824 -1.2100 0.0209 7 6 2.1961 -1.1970 0.0168 8 6 1.7017 -2.6259 0.0374 9 6 2.9817 -3.4775 0.0483 10 7 4.0849 -2.5131 0.0327 11 6 5.4311 -2.8456 0.0366 12 7 6.4415 -2.0084 0.0243 13 7 7.5490 -2.6606 0.0380 14 6 7.3127 -3.9421 0.0501 15 6 8.3446 -5.0403 0.0642 16 1 7.8444 -6.0087 0.0778 17 6 9.2205 -4.9011 1.3110 18 6 9.2184 -4.9352 -1.1873 19 6 10.1693 -6.1034 -1.2356 20 1 10.1523 -6.8464 -0.4518 21 6 11.0608 -6.2239 -2.2804 22 7 11.0812 -5.3196 -3.2350 23 14 12.2398 -7.6716 -2.3399 24 1 11.4663 -8.9386 -2.3805 25 1 13.0871 -7.5703 -3.5553 26 1 13.1030 -7.6571 -1.1316 27 7 5.9556 -4.1055 0.0534 28 6 5.2172 -5.3707 0.0717 29 1 -0.3633 0.0144 1.0276 30 1 -0.3634 0.8826 -0.5262 31 1 -0.3633 -0.8971 -0.5013 32 1 1.6568 2.1339 -0.0093 33 1 4.1189 2.1321 -0.0078 34 1 5.3517 0.0096 0.0119 35 1 1.1123 -2.8373 -0.8549 36 1 1.1132 -2.8118 0.9357 37 1 3.0219 -4.1112 -0.8376 38 1 3.0233 -4.0860 0.9516 39 1 9.7207 -3.9328 1.2974 40 1 8.5980 -4.9760 2.2025 41 1 9.9666 -5.6957 1.3214 42 1 8.5853 -4.9453 -2.0744 43 1 9.7865 -4.0055 -1.1568 44 1 11.7082 -5.4046 -3.9703 45 1 5.0349 -5.6701 1.1039 46 1 4.2650 -5.2432 -0.4432 47 1 5.8024 -6.1402 -0.4318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351184250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:14 Heat of formation + Delta-G solvation = 111.616985 kcal Electronic energy + Delta-G solvation = -27392.622099 eV Core-core repulsion = 23769.639206 eV Total energy + Delta-G solvation = -3622.982893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.65191 -40.66337 -37.15487 -35.42529 -34.54328 -33.54866 -32.29954 -31.26124 -29.54880 -28.26239 -27.52424 -26.92664 -26.64747 -24.17743 -23.11232 -23.01479 -21.93433 -21.22171 -20.06317 -19.08043 -17.20466 -16.75545 -16.66183 -16.15190 -15.91046 -15.58375 -15.55042 -14.69218 -14.53003 -14.04437 -13.83872 -13.54943 -13.42761 -13.24956 -13.15206 -12.95189 -12.77431 -12.45232 -12.31243 -12.27806 -12.09310 -11.76546 -11.63149 -11.29530 -11.10887 -10.93042 -10.81466 -10.75466 -10.70529 -10.48361 -10.15267 -9.90889 -9.77013 -9.54177 -9.13178 -8.72735 -8.64025 -8.36897 -7.24137 -6.00584 -4.04628 1.26856 1.33314 2.00894 2.32233 2.98384 3.31590 3.34842 3.37261 3.38719 3.71263 4.12317 4.25044 4.43033 4.47657 4.66223 4.77119 4.82797 4.86696 4.98197 5.01073 5.14021 5.17835 5.27831 5.33744 5.34710 5.36701 5.37825 5.47715 5.50935 5.57330 5.65090 5.81457 5.86736 6.04309 6.10692 6.21377 6.24533 6.35414 6.44282 6.55306 6.68197 6.70392 6.83557 6.92382 7.05368 7.13235 7.48917 7.61921 7.78458 7.98639 8.34167 9.00845 9.23359 9.58879 11.10378 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.025123 B = 0.002581 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.269706 B =10845.570444 C =11229.643455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.042 4.042 3 C -0.158 4.158 4 C -0.081 4.081 5 C -0.147 4.147 6 C 0.192 3.808 7 C -0.158 4.158 8 C -0.077 4.077 9 C 0.112 3.888 10 N -0.527 5.527 11 C 0.415 3.585 12 N -0.324 5.324 13 N -0.276 5.276 14 C 0.213 3.787 15 C 0.001 3.999 16 H 0.071 0.929 17 C -0.125 4.125 18 C 0.038 3.962 19 C -0.522 4.522 20 H 0.058 0.942 21 C 0.059 3.941 22 N -0.890 5.890 23 Si 0.892 3.108 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.276 1.276 27 N -0.500 5.500 28 C 0.067 3.933 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.145 0.855 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.031 0.969 41 H 0.075 0.925 42 H 0.013 0.987 43 H 0.033 0.967 44 H 0.262 0.738 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.830 5.211 8.288 25.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.043 4.043 3 C -0.178 4.178 4 C -0.099 4.099 5 C -0.169 4.169 6 C 0.094 3.906 7 C -0.162 4.162 8 C -0.114 4.114 9 C -0.010 4.010 10 N -0.238 5.238 11 C 0.061 3.939 12 N -0.169 5.169 13 N -0.112 5.112 14 C -0.055 4.055 15 C -0.021 4.021 16 H 0.090 0.910 17 C -0.184 4.184 18 C 0.000 4.000 19 C -0.560 4.560 20 H 0.076 0.924 21 C -0.143 4.143 22 N -0.529 5.529 23 Si 0.720 3.280 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.201 1.201 27 N -0.198 5.198 28 C -0.076 4.076 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.162 0.838 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.050 0.950 41 H 0.093 0.907 42 H 0.032 0.968 43 H 0.051 0.949 44 H 0.072 0.928 45 H 0.095 0.905 46 H 0.104 0.896 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -22.892 6.401 8.102 25.113 hybrid contribution -0.061 -2.155 -0.226 2.168 sum -22.953 4.246 7.877 24.636 Atomic orbital electron populations 1.20746 0.91274 1.02639 1.02182 1.19047 0.95454 0.91042 0.98713 1.20826 0.94188 0.96921 1.05866 1.20874 0.93973 0.97307 0.97780 1.20968 1.01855 0.89542 1.04493 1.18028 0.91763 0.83924 0.96856 1.19551 0.92032 0.94457 1.10166 1.20994 0.96098 0.90739 1.03607 1.22241 0.84661 0.91927 1.02191 1.42672 0.99292 1.05057 1.76738 1.20539 0.86235 0.82645 1.04472 1.74518 0.93049 1.24297 1.25004 1.74052 1.16968 1.01490 1.18676 1.25450 0.80942 0.96717 1.02368 1.19981 0.91266 0.90182 1.00631 0.91036 1.21676 0.99090 1.03522 0.94066 1.19112 0.93398 0.98404 0.89073 1.21100 1.18463 1.08520 1.07910 0.92389 1.25006 0.97376 0.96229 0.95662 1.69973 1.37028 1.34458 1.11404 0.86662 0.81056 0.82802 0.77483 1.20339 1.21319 1.20126 1.46080 1.07733 1.06103 1.59921 1.22266 0.97628 0.84128 1.03617 0.91226 0.91490 0.91731 0.85980 0.85558 0.83772 0.89226 0.89251 0.90371 0.90494 0.91991 0.95023 0.90652 0.96837 0.94902 0.92842 0.90511 0.89631 0.88190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 9.88 36.00 0.36 -0.38 16 2 C -0.04 -0.42 5.88 -104.65 -0.62 -1.03 16 3 C -0.16 -1.60 9.71 -39.55 -0.38 -1.98 16 4 C -0.08 -0.94 10.02 -39.71 -0.40 -1.34 16 5 C -0.15 -2.14 9.62 -39.20 -0.38 -2.51 16 6 C 0.19 2.72 6.65 -83.62 -0.56 2.17 16 7 C -0.16 -1.75 6.07 -104.26 -0.63 -2.39 16 8 C -0.08 -0.61 6.33 -27.24 -0.17 -0.78 16 9 C 0.11 1.05 5.56 -3.64 -0.02 1.03 16 10 N -0.53 -7.55 3.24 -114.25 -0.37 -7.92 16 11 C 0.41 7.37 8.57 -318.69 -2.73 4.64 16 12 N -0.32 -6.77 10.19 30.34 0.31 -6.47 16 13 N -0.28 -6.22 12.18 32.99 0.40 -5.82 16 14 C 0.21 4.31 6.57 -154.04 -1.01 3.29 16 15 C 0.00 0.01 2.70 -91.77 -0.25 -0.24 16 16 H 0.07 1.32 6.94 -51.93 -0.36 0.96 16 17 C -0.13 -2.38 8.99 37.16 0.33 -2.04 16 18 C 0.04 0.98 4.43 -27.88 -0.12 0.86 16 19 C -0.52 -14.12 8.41 -34.44 -0.29 -14.41 16 20 H 0.06 1.48 7.06 -52.48 -0.37 1.11 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 23 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 N -0.50 -8.37 3.21 -121.43 -0.39 -8.76 16 28 C 0.07 0.74 9.97 59.85 0.60 1.34 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 31 H 0.06 0.37 7.71 -51.93 -0.40 -0.03 16 32 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 34 H 0.14 2.41 6.42 -52.48 -0.34 2.07 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.64 6.65 -51.93 -0.35 0.30 16 38 H 0.08 0.60 7.76 -51.93 -0.40 0.19 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 1.43 6.95 -51.93 -0.36 1.07 16 42 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.09 0.74 4.99 -51.93 -0.26 0.48 16 47 H 0.10 1.11 7.23 -51.93 -0.38 0.73 16 LS Contribution 377.12 15.07 5.68 5.68 Total: -1.00 -34.67 377.12 -12.01 -46.69 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -6.99 Total: -1.34 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -6.37 Total: -12.21 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.69 Total: -54.99 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.67 -12.01 -46.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351184250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.303 kcal (2) G-P(sol) polarization free energy of solvation -34.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds