Wall clock time and date at job start Tue Mar 31 2020 14:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38290 * 119.91943 * 2 1 4 4 C 1.38270 * 119.83251 * 179.97438 * 3 2 1 5 5 C 1.37868 * 120.22870 * 359.51626 * 4 3 2 6 6 C 1.39634 * 120.28004 * 0.02562 * 5 4 3 7 7 C 1.38126 * 119.92840 * 179.19622 * 2 1 3 8 8 C 1.51216 * 130.98850 * 359.97438 * 7 2 1 9 9 C 1.53748 * 104.55513 * 179.97438 * 8 7 2 10 10 N 1.39664 * 129.33691 * 180.02562 * 6 5 4 11 11 C 1.38671 * 124.95747 * 359.97017 * 10 6 5 12 12 N 1.31223 * 126.47836 * 359.70201 * 11 10 6 13 13 N 1.28530 * 109.85273 * 179.75292 * 12 11 10 14 14 C 1.30321 * 110.05081 * 0.44264 * 13 12 11 15 15 C 1.50698 * 126.33831 * 179.82304 * 14 13 12 16 16 H 1.09001 * 109.47122 * 179.69637 * 15 14 13 17 17 C 1.53006 * 109.47184 * 59.69751 * 15 14 13 18 18 C 1.52997 * 109.47342 * 299.69527 * 15 14 13 19 19 C 1.50706 * 109.47267 * 185.00359 * 18 15 14 20 20 H 1.08007 * 119.99917 * 359.97438 * 19 18 15 21 21 C 1.37873 * 119.99976 * 179.97438 * 19 18 15 22 22 N 1.31509 * 120.00138 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99638 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47024 * 60.00318 * 23 21 19 25 25 H 1.48503 * 109.46994 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47732 * 300.00016 * 23 21 19 27 27 N 1.36483 * 126.46989 * 179.72012 * 11 10 6 28 28 C 1.46502 * 127.13777 * 359.96431 * 27 11 10 29 29 H 1.09001 * 109.47028 * 270.80336 * 1 2 3 30 30 H 1.08995 * 109.47373 * 30.80387 * 1 2 3 31 31 H 1.09002 * 109.46913 * 150.80431 * 1 2 3 32 32 H 1.07996 * 120.08210 * 359.43107 * 3 2 1 33 33 H 1.08004 * 119.88199 * 179.49084 * 4 3 2 34 34 H 1.08007 * 119.85877 * 180.02562 * 5 4 3 35 35 H 1.08999 * 110.42162 * 61.22669 * 8 7 2 36 36 H 1.08995 * 110.42213 * 298.76400 * 8 7 2 37 37 H 1.09001 * 110.29691 * 241.07282 * 9 8 7 38 38 H 1.08994 * 110.30011 * 118.92910 * 9 8 7 39 39 H 1.09001 * 109.47002 * 299.99404 * 17 15 14 40 40 H 1.08993 * 109.46955 * 59.99842 * 17 15 14 41 41 H 1.09000 * 109.47050 * 179.97438 * 17 15 14 42 42 H 1.09000 * 109.47278 * 304.99798 * 18 15 14 43 43 H 1.08994 * 109.47510 * 65.00307 * 18 15 14 44 44 H 0.97005 * 119.99650 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.46621 * 270.01967 * 28 27 11 46 46 H 1.08997 * 109.47082 * 30.01829 * 28 27 11 47 47 H 1.09002 * 109.46806 * 150.02318 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1967 1.1986 0.0000 4 6 3.5794 1.1965 0.0005 5 6 4.2717 0.0043 0.0111 6 6 3.5824 -1.2100 0.0209 7 6 2.1961 -1.1970 0.0168 8 6 1.7017 -2.6259 0.0374 9 6 2.9817 -3.4775 0.0483 10 7 4.0849 -2.5131 0.0327 11 6 5.4311 -2.8456 0.0366 12 7 6.4415 -2.0084 0.0243 13 7 7.5490 -2.6606 0.0380 14 6 7.3127 -3.9421 0.0501 15 6 8.3446 -5.0403 0.0642 16 1 7.8444 -6.0087 0.0778 17 6 9.2205 -4.9011 1.3110 18 6 9.2184 -4.9352 -1.1873 19 6 10.1693 -6.1034 -1.2356 20 1 10.1523 -6.8464 -0.4518 21 6 11.0608 -6.2239 -2.2804 22 7 11.0812 -5.3196 -3.2350 23 14 12.2398 -7.6716 -2.3399 24 1 11.4663 -8.9386 -2.3805 25 1 13.0871 -7.5703 -3.5553 26 1 13.1030 -7.6571 -1.1316 27 7 5.9556 -4.1055 0.0534 28 6 5.2172 -5.3707 0.0717 29 1 -0.3633 0.0144 1.0276 30 1 -0.3634 0.8826 -0.5262 31 1 -0.3633 -0.8971 -0.5013 32 1 1.6568 2.1339 -0.0093 33 1 4.1189 2.1321 -0.0078 34 1 5.3517 0.0096 0.0119 35 1 1.1123 -2.8373 -0.8549 36 1 1.1132 -2.8118 0.9357 37 1 3.0219 -4.1112 -0.8376 38 1 3.0233 -4.0860 0.9516 39 1 9.7207 -3.9328 1.2974 40 1 8.5980 -4.9760 2.2025 41 1 9.9666 -5.6957 1.3214 42 1 8.5853 -4.9453 -2.0744 43 1 9.7865 -4.0055 -1.1568 44 1 11.7082 -5.4046 -3.9703 45 1 5.0349 -5.6701 1.1039 46 1 4.2650 -5.2432 -0.4432 47 1 5.8024 -6.1402 -0.4318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351184250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:13 Heat of formation + Delta-G solvation = 94.904069 kcal Electronic energy + Delta-G solvation = -27393.346826 eV Core-core repulsion = 23769.639206 eV Total energy + Delta-G solvation = -3623.707620 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.04064 -41.55853 -38.08098 -37.12509 -35.85369 -34.54221 -34.12991 -32.29581 -30.39110 -29.72119 -28.77774 -28.53634 -27.36679 -25.94690 -24.23701 -24.01713 -23.41516 -22.21404 -21.16794 -20.55845 -18.63807 -18.24200 -17.84743 -17.45663 -16.94641 -16.60374 -16.45083 -16.40186 -15.68162 -15.48733 -14.96676 -14.57381 -14.39121 -14.34303 -14.28346 -14.12814 -13.74850 -13.70146 -13.43767 -13.13270 -12.97895 -12.91298 -12.84885 -12.76802 -12.63097 -12.45986 -12.29658 -12.24583 -11.96448 -11.76488 -11.70916 -11.47303 -11.30002 -11.15583 -10.99671 -10.54456 -10.00045 -9.49681 -8.35644 -8.16053 -6.28725 0.30164 0.43229 0.83466 1.02309 1.43494 1.47277 1.54599 1.87912 1.92762 2.43751 2.82745 3.17433 3.32712 3.43462 3.52509 3.61563 3.89178 3.98609 4.03822 4.04720 4.18155 4.22532 4.33519 4.40999 4.42473 4.51356 4.52480 4.56522 4.68266 4.69311 4.77632 4.87106 4.89285 4.98242 5.04320 5.05250 5.08822 5.16082 5.27240 5.37244 5.39362 5.44753 5.58272 5.63240 5.69935 5.70244 5.77532 5.83152 6.18168 6.19996 6.31931 6.87230 7.40667 7.78171 8.96003 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.025123 B = 0.002581 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.269706 B =10845.570444 C =11229.643455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.043 4.043 3 C -0.154 4.154 4 C -0.090 4.090 5 C -0.181 4.181 6 C 0.153 3.847 7 C -0.152 4.152 8 C -0.069 4.069 9 C 0.100 3.900 10 N -0.530 5.530 11 C 0.426 3.574 12 N -0.370 5.370 13 N -0.322 5.322 14 C 0.198 3.802 15 C 0.013 3.987 16 H 0.099 0.901 17 C -0.118 4.118 18 C 0.050 3.950 19 C -0.528 4.528 20 H 0.079 0.921 21 C -0.004 4.004 22 N -0.939 5.939 23 Si 0.969 3.031 24 H -0.260 1.260 25 H -0.291 1.291 26 H -0.264 1.264 27 N -0.495 5.495 28 C 0.054 3.946 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.151 0.849 33 H 0.137 0.863 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.037 0.963 40 H 0.062 0.938 41 H 0.076 0.924 42 H -0.022 1.022 43 H -0.013 1.013 44 H 0.261 0.739 45 H 0.106 0.894 46 H 0.113 0.887 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.664 2.955 9.621 29.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.044 4.044 3 C -0.173 4.173 4 C -0.109 4.109 5 C -0.203 4.203 6 C 0.056 3.944 7 C -0.156 4.156 8 C -0.106 4.106 9 C -0.021 4.021 10 N -0.242 5.242 11 C 0.071 3.929 12 N -0.215 5.215 13 N -0.158 5.158 14 C -0.071 4.071 15 C -0.008 4.008 16 H 0.117 0.883 17 C -0.176 4.176 18 C 0.012 3.988 19 C -0.566 4.566 20 H 0.097 0.903 21 C -0.202 4.202 22 N -0.579 5.579 23 Si 0.793 3.207 24 H -0.185 1.185 25 H -0.217 1.217 26 H -0.189 1.189 27 N -0.193 5.193 28 C -0.087 4.087 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.169 0.831 33 H 0.155 0.845 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.095 0.905 42 H -0.004 1.004 43 H 0.006 0.994 44 H 0.070 0.930 45 H 0.125 0.875 46 H 0.131 0.869 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -26.791 4.126 9.458 28.710 hybrid contribution 0.952 -1.303 -0.653 1.741 sum -25.839 2.823 8.805 27.444 Atomic orbital electron populations 1.20821 0.88242 1.04018 1.03441 1.19547 0.97557 0.90345 0.96903 1.21223 0.93367 0.98613 1.04122 1.21066 0.95185 0.96759 0.97872 1.20937 1.00495 0.91593 1.07300 1.18399 0.93399 0.83654 0.98918 1.19992 0.90561 0.96716 1.08370 1.21138 0.95571 0.87814 1.06069 1.22697 0.83604 0.91819 1.03932 1.43094 0.98415 1.06388 1.76279 1.20772 0.87459 0.82615 1.02079 1.74411 0.93679 1.25619 1.27793 1.73926 1.18792 1.03097 1.20032 1.25208 0.82608 0.95942 1.03387 1.19743 0.91004 0.91669 0.98409 0.88251 1.21589 0.99185 1.02168 0.94623 1.18856 0.93233 0.96209 0.90530 1.21549 1.18143 1.08775 1.08112 0.90312 1.26055 0.99537 0.99324 0.95244 1.70160 1.38287 1.37043 1.12407 0.85449 0.78522 0.79246 0.77513 1.18482 1.21723 1.18899 1.46194 1.06615 1.07411 1.59069 1.22751 0.98189 0.81628 1.06093 0.89817 0.90282 0.90309 0.83101 0.84507 0.87412 0.86848 0.86473 0.88990 0.88325 0.94340 0.91932 0.90520 1.00401 0.99435 0.92993 0.87517 0.86856 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.88 71.23 0.70 -0.24 16 2 C -0.04 -0.73 5.88 -19.88 -0.12 -0.84 16 3 C -0.15 -2.84 9.71 22.29 0.22 -2.62 16 4 C -0.09 -2.17 10.02 22.19 0.22 -1.95 16 5 C -0.18 -5.69 9.62 22.52 0.22 -5.47 16 6 C 0.15 4.38 6.65 38.33 0.25 4.63 16 7 C -0.15 -3.04 6.07 -19.63 -0.12 -3.16 16 8 C -0.07 -0.81 6.33 30.26 0.19 -0.61 16 9 C 0.10 1.56 5.56 86.62 0.48 2.04 16 10 N -0.53 -14.98 3.24 -515.39 -1.67 -16.65 16 11 C 0.43 15.62 8.57 260.05 2.23 17.85 16 12 N -0.37 -16.73 10.19 -57.92 -0.59 -17.32 16 13 N -0.32 -15.69 12.18 -49.55 -0.60 -16.30 16 14 C 0.20 8.35 6.57 137.65 0.90 9.25 16 15 C 0.01 0.53 2.70 -11.54 -0.03 0.50 16 16 H 0.10 3.54 6.94 -2.39 -0.02 3.53 16 17 C -0.12 -4.49 8.99 71.98 0.65 -3.84 16 18 C 0.05 2.71 4.43 29.85 0.13 2.85 16 19 C -0.53 -28.99 8.41 25.60 0.22 -28.77 16 20 H 0.08 3.92 7.06 -2.91 -0.02 3.90 16 21 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 22 N -0.94 -58.78 13.29 21.44 0.28 -58.49 16 23 Si 0.97 43.59 29.54 68.60 2.03 45.62 16 24 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 26 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 27 N -0.49 -16.56 3.21 -538.08 -1.73 -18.28 16 28 C 0.05 1.06 9.97 127.77 1.27 2.34 16 29 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 0.54 8.09 -2.39 -0.02 0.52 16 31 H 0.08 0.50 7.71 -2.39 -0.02 0.48 16 32 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 34 H 0.11 4.11 6.42 -2.91 -0.02 4.10 16 35 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.09 1.17 6.65 -2.39 -0.02 1.16 16 38 H 0.10 1.12 7.76 -2.39 -0.02 1.10 16 39 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.08 2.86 6.95 -2.39 -0.02 2.85 16 42 H -0.02 -1.35 8.14 -2.39 -0.02 -1.37 16 43 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 44 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 45 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.11 1.58 4.99 -2.39 -0.01 1.57 16 47 H 0.10 2.01 7.23 -2.39 -0.02 1.99 16 Total: -1.00 -83.73 377.12 6.58 -77.15 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.97 Total: 12.11 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 7.88 Total: -7.84 kcal Atomic # 7 Polarization: -122.74 SS G_CDS: -4.31 Total: -127.05 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -83.73 6.58 -77.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351184250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.057 kcal (2) G-P(sol) polarization free energy of solvation -83.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds