Wall clock time and date at job start Tue Mar 31 2020 14:47:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 C 1.38290 * 119.91943 * 2 1
4 4 C 1.38270 * 119.83251 * 179.97438 * 3 2 1
5 5 C 1.37868 * 120.22870 * 359.51626 * 4 3 2
6 6 C 1.39634 * 120.28004 * 0.02562 * 5 4 3
7 7 C 1.38126 * 119.92840 * 179.19622 * 2 1 3
8 8 C 1.51216 * 130.98850 * 359.97438 * 7 2 1
9 9 C 1.53748 * 104.55513 * 179.97438 * 8 7 2
10 10 N 1.39664 * 129.33691 * 180.02562 * 6 5 4
11 11 C 1.38671 * 124.95747 * 359.97017 * 10 6 5
12 12 N 1.31223 * 126.47836 * 359.70201 * 11 10 6
13 13 N 1.28530 * 109.85273 * 179.75292 * 12 11 10
14 14 C 1.30321 * 110.05081 * 0.44264 * 13 12 11
15 15 C 1.50698 * 126.33831 * 179.82304 * 14 13 12
16 16 H 1.09001 * 109.47122 * 179.69637 * 15 14 13
17 17 C 1.53006 * 109.47184 * 59.69751 * 15 14 13
18 18 C 1.52997 * 109.47342 * 299.69527 * 15 14 13
19 19 C 1.50706 * 109.47267 * 185.00359 * 18 15 14
20 20 H 1.08007 * 119.99917 * 359.97438 * 19 18 15
21 21 C 1.37873 * 119.99976 * 179.97438 * 19 18 15
22 22 N 1.31509 * 120.00138 * 359.97438 * 21 19 18
23 23 Si 1.86802 * 119.99638 * 179.97438 * 21 19 18
24 24 H 1.48504 * 109.47024 * 60.00318 * 23 21 19
25 25 H 1.48503 * 109.46994 * 179.97438 * 23 21 19
26 26 H 1.48496 * 109.47732 * 300.00016 * 23 21 19
27 27 N 1.36483 * 126.46989 * 179.72012 * 11 10 6
28 28 C 1.46502 * 127.13777 * 359.96431 * 27 11 10
29 29 H 1.09001 * 109.47028 * 270.80336 * 1 2 3
30 30 H 1.08995 * 109.47373 * 30.80387 * 1 2 3
31 31 H 1.09002 * 109.46913 * 150.80431 * 1 2 3
32 32 H 1.07996 * 120.08210 * 359.43107 * 3 2 1
33 33 H 1.08004 * 119.88199 * 179.49084 * 4 3 2
34 34 H 1.08007 * 119.85877 * 180.02562 * 5 4 3
35 35 H 1.08999 * 110.42162 * 61.22669 * 8 7 2
36 36 H 1.08995 * 110.42213 * 298.76400 * 8 7 2
37 37 H 1.09001 * 110.29691 * 241.07282 * 9 8 7
38 38 H 1.08994 * 110.30011 * 118.92910 * 9 8 7
39 39 H 1.09001 * 109.47002 * 299.99404 * 17 15 14
40 40 H 1.08993 * 109.46955 * 59.99842 * 17 15 14
41 41 H 1.09000 * 109.47050 * 179.97438 * 17 15 14
42 42 H 1.09000 * 109.47278 * 304.99798 * 18 15 14
43 43 H 1.08994 * 109.47510 * 65.00307 * 18 15 14
44 44 H 0.97005 * 119.99650 * 180.02562 * 22 21 19
45 45 H 1.09002 * 109.46621 * 270.01967 * 28 27 11
46 46 H 1.08997 * 109.47082 * 30.01829 * 28 27 11
47 47 H 1.09002 * 109.46806 * 150.02318 * 28 27 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1967 1.1986 0.0000
4 6 3.5794 1.1965 0.0005
5 6 4.2717 0.0043 0.0111
6 6 3.5824 -1.2100 0.0209
7 6 2.1961 -1.1970 0.0168
8 6 1.7017 -2.6259 0.0374
9 6 2.9817 -3.4775 0.0483
10 7 4.0849 -2.5131 0.0327
11 6 5.4311 -2.8456 0.0366
12 7 6.4415 -2.0084 0.0243
13 7 7.5490 -2.6606 0.0380
14 6 7.3127 -3.9421 0.0501
15 6 8.3446 -5.0403 0.0642
16 1 7.8444 -6.0087 0.0778
17 6 9.2205 -4.9011 1.3110
18 6 9.2184 -4.9352 -1.1873
19 6 10.1693 -6.1034 -1.2356
20 1 10.1523 -6.8464 -0.4518
21 6 11.0608 -6.2239 -2.2804
22 7 11.0812 -5.3196 -3.2350
23 14 12.2398 -7.6716 -2.3399
24 1 11.4663 -8.9386 -2.3805
25 1 13.0871 -7.5703 -3.5553
26 1 13.1030 -7.6571 -1.1316
27 7 5.9556 -4.1055 0.0534
28 6 5.2172 -5.3707 0.0717
29 1 -0.3633 0.0144 1.0276
30 1 -0.3634 0.8826 -0.5262
31 1 -0.3633 -0.8971 -0.5013
32 1 1.6568 2.1339 -0.0093
33 1 4.1189 2.1321 -0.0078
34 1 5.3517 0.0096 0.0119
35 1 1.1123 -2.8373 -0.8549
36 1 1.1132 -2.8118 0.9357
37 1 3.0219 -4.1112 -0.8376
38 1 3.0233 -4.0860 0.9516
39 1 9.7207 -3.9328 1.2974
40 1 8.5980 -4.9760 2.2025
41 1 9.9666 -5.6957 1.3214
42 1 8.5853 -4.9453 -2.0744
43 1 9.7865 -4.0055 -1.1568
44 1 11.7082 -5.4046 -3.9703
45 1 5.0349 -5.6701 1.1039
46 1 4.2650 -5.2432 -0.4432
47 1 5.8024 -6.1402 -0.4318
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001351184250.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:47:13
Heat of formation + Delta-G solvation = 94.904069 kcal
Electronic energy + Delta-G solvation = -27393.346826 eV
Core-core repulsion = 23769.639206 eV
Total energy + Delta-G solvation = -3623.707620 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 326.180 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-44.04064 -41.55853 -38.08098 -37.12509 -35.85369 -34.54221 -34.12991 -32.29581
-30.39110 -29.72119 -28.77774 -28.53634 -27.36679 -25.94690 -24.23701 -24.01713
-23.41516 -22.21404 -21.16794 -20.55845 -18.63807 -18.24200 -17.84743 -17.45663
-16.94641 -16.60374 -16.45083 -16.40186 -15.68162 -15.48733 -14.96676 -14.57381
-14.39121 -14.34303 -14.28346 -14.12814 -13.74850 -13.70146 -13.43767 -13.13270
-12.97895 -12.91298 -12.84885 -12.76802 -12.63097 -12.45986 -12.29658 -12.24583
-11.96448 -11.76488 -11.70916 -11.47303 -11.30002 -11.15583 -10.99671 -10.54456
-10.00045 -9.49681 -8.35644 -8.16053 -6.28725 0.30164 0.43229 0.83466
1.02309 1.43494 1.47277 1.54599 1.87912 1.92762 2.43751 2.82745
3.17433 3.32712 3.43462 3.52509 3.61563 3.89178 3.98609 4.03822
4.04720 4.18155 4.22532 4.33519 4.40999 4.42473 4.51356 4.52480
4.56522 4.68266 4.69311 4.77632 4.87106 4.89285 4.98242 5.04320
5.05250 5.08822 5.16082 5.27240 5.37244 5.39362 5.44753 5.58272
5.63240 5.69935 5.70244 5.77532 5.83152 6.18168 6.19996 6.31931
6.87230 7.40667 7.78171 8.96003
Molecular weight = 326.18amu
Principal moments of inertia in cm(-1)
A = 0.025123 B = 0.002581 C = 0.002493
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1114.269706 B =10845.570444 C =11229.643455
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 C -0.043 4.043
3 C -0.154 4.154
4 C -0.090 4.090
5 C -0.181 4.181
6 C 0.153 3.847
7 C -0.152 4.152
8 C -0.069 4.069
9 C 0.100 3.900
10 N -0.530 5.530
11 C 0.426 3.574
12 N -0.370 5.370
13 N -0.322 5.322
14 C 0.198 3.802
15 C 0.013 3.987
16 H 0.099 0.901
17 C -0.118 4.118
18 C 0.050 3.950
19 C -0.528 4.528
20 H 0.079 0.921
21 C -0.004 4.004
22 N -0.939 5.939
23 Si 0.969 3.031
24 H -0.260 1.260
25 H -0.291 1.291
26 H -0.264 1.264
27 N -0.495 5.495
28 C 0.054 3.946
29 H 0.083 0.917
30 H 0.078 0.922
31 H 0.078 0.922
32 H 0.151 0.849
33 H 0.137 0.863
34 H 0.108 0.892
35 H 0.113 0.887
36 H 0.117 0.883
37 H 0.092 0.908
38 H 0.099 0.901
39 H 0.037 0.963
40 H 0.062 0.938
41 H 0.076 0.924
42 H -0.022 1.022
43 H -0.013 1.013
44 H 0.261 0.739
45 H 0.106 0.894
46 H 0.113 0.887
47 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.664 2.955 9.621 29.438
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C -0.044 4.044
3 C -0.173 4.173
4 C -0.109 4.109
5 C -0.203 4.203
6 C 0.056 3.944
7 C -0.156 4.156
8 C -0.106 4.106
9 C -0.021 4.021
10 N -0.242 5.242
11 C 0.071 3.929
12 N -0.215 5.215
13 N -0.158 5.158
14 C -0.071 4.071
15 C -0.008 4.008
16 H 0.117 0.883
17 C -0.176 4.176
18 C 0.012 3.988
19 C -0.566 4.566
20 H 0.097 0.903
21 C -0.202 4.202
22 N -0.579 5.579
23 Si 0.793 3.207
24 H -0.185 1.185
25 H -0.217 1.217
26 H -0.189 1.189
27 N -0.193 5.193
28 C -0.087 4.087
29 H 0.102 0.898
30 H 0.097 0.903
31 H 0.097 0.903
32 H 0.169 0.831
33 H 0.155 0.845
34 H 0.126 0.874
35 H 0.132 0.868
36 H 0.135 0.865
37 H 0.110 0.890
38 H 0.117 0.883
39 H 0.057 0.943
40 H 0.081 0.919
41 H 0.095 0.905
42 H -0.004 1.004
43 H 0.006 0.994
44 H 0.070 0.930
45 H 0.125 0.875
46 H 0.131 0.869
47 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -26.791 4.126 9.458 28.710
hybrid contribution 0.952 -1.303 -0.653 1.741
sum -25.839 2.823 8.805 27.444
Atomic orbital electron populations
1.20821 0.88242 1.04018 1.03441 1.19547 0.97557 0.90345 0.96903
1.21223 0.93367 0.98613 1.04122 1.21066 0.95185 0.96759 0.97872
1.20937 1.00495 0.91593 1.07300 1.18399 0.93399 0.83654 0.98918
1.19992 0.90561 0.96716 1.08370 1.21138 0.95571 0.87814 1.06069
1.22697 0.83604 0.91819 1.03932 1.43094 0.98415 1.06388 1.76279
1.20772 0.87459 0.82615 1.02079 1.74411 0.93679 1.25619 1.27793
1.73926 1.18792 1.03097 1.20032 1.25208 0.82608 0.95942 1.03387
1.19743 0.91004 0.91669 0.98409 0.88251 1.21589 0.99185 1.02168
0.94623 1.18856 0.93233 0.96209 0.90530 1.21549 1.18143 1.08775
1.08112 0.90312 1.26055 0.99537 0.99324 0.95244 1.70160 1.38287
1.37043 1.12407 0.85449 0.78522 0.79246 0.77513 1.18482 1.21723
1.18899 1.46194 1.06615 1.07411 1.59069 1.22751 0.98189 0.81628
1.06093 0.89817 0.90282 0.90309 0.83101 0.84507 0.87412 0.86848
0.86473 0.88990 0.88325 0.94340 0.91932 0.90520 1.00401 0.99435
0.92993 0.87517 0.86856 0.88085
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.95 9.88 71.23 0.70 -0.24 16
2 C -0.04 -0.73 5.88 -19.88 -0.12 -0.84 16
3 C -0.15 -2.84 9.71 22.29 0.22 -2.62 16
4 C -0.09 -2.17 10.02 22.19 0.22 -1.95 16
5 C -0.18 -5.69 9.62 22.52 0.22 -5.47 16
6 C 0.15 4.38 6.65 38.33 0.25 4.63 16
7 C -0.15 -3.04 6.07 -19.63 -0.12 -3.16 16
8 C -0.07 -0.81 6.33 30.26 0.19 -0.61 16
9 C 0.10 1.56 5.56 86.62 0.48 2.04 16
10 N -0.53 -14.98 3.24 -515.39 -1.67 -16.65 16
11 C 0.43 15.62 8.57 260.05 2.23 17.85 16
12 N -0.37 -16.73 10.19 -57.92 -0.59 -17.32 16
13 N -0.32 -15.69 12.18 -49.55 -0.60 -16.30 16
14 C 0.20 8.35 6.57 137.65 0.90 9.25 16
15 C 0.01 0.53 2.70 -11.54 -0.03 0.50 16
16 H 0.10 3.54 6.94 -2.39 -0.02 3.53 16
17 C -0.12 -4.49 8.99 71.98 0.65 -3.84 16
18 C 0.05 2.71 4.43 29.85 0.13 2.85 16
19 C -0.53 -28.99 8.41 25.60 0.22 -28.77 16
20 H 0.08 3.92 7.06 -2.91 -0.02 3.90 16
21 C 0.00 -0.24 5.46 84.65 0.46 0.22 16
22 N -0.94 -58.78 13.29 21.44 0.28 -58.49 16
23 Si 0.97 43.59 29.54 68.60 2.03 45.62 16
24 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16
25 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16
26 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16
27 N -0.49 -16.56 3.21 -538.08 -1.73 -18.28 16
28 C 0.05 1.06 9.97 127.77 1.27 2.34 16
29 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16
30 H 0.08 0.54 8.09 -2.39 -0.02 0.52 16
31 H 0.08 0.50 7.71 -2.39 -0.02 0.48 16
32 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16
33 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16
34 H 0.11 4.11 6.42 -2.91 -0.02 4.10 16
35 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16
36 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16
37 H 0.09 1.17 6.65 -2.39 -0.02 1.16 16
38 H 0.10 1.12 7.76 -2.39 -0.02 1.10 16
39 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16
40 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16
41 H 0.08 2.86 6.95 -2.39 -0.02 2.85 16
42 H -0.02 -1.35 8.14 -2.39 -0.02 -1.37 16
43 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16
44 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16
45 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16
46 H 0.11 1.58 4.99 -2.39 -0.01 1.57 16
47 H 0.10 2.01 7.23 -2.39 -0.02 1.99 16
Total: -1.00 -83.73 377.12 6.58 -77.15
By element:
Atomic # 1 Polarization: 11.13 SS G_CDS: 0.97 Total: 12.11 kcal
Atomic # 6 Polarization: -15.72 SS G_CDS: 7.88 Total: -7.84 kcal
Atomic # 7 Polarization: -122.74 SS G_CDS: -4.31 Total: -127.05 kcal
Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal
Total: -83.73 6.58 -77.15 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001351184250.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 172.057 kcal
(2) G-P(sol) polarization free energy of solvation -83.731 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.326 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.578 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.153 kcal
(6) G-S(sol) free energy of system = (1) + (5) 94.904 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds