Wall clock time and date at job start Tue Mar 31 2020 15:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46897 * 109.46998 * 256.98998 * 3 2 1 5 5 C 1.46900 * 111.00212 * 286.03181 * 4 3 2 6 6 C 1.47197 * 109.47113 * 66.04825 * 5 4 3 7 7 C 3.01171 * 74.51098 * 217.93425 * 2 1 3 8 8 C 3.89961 * 54.90347 * 215.52181 * 2 1 3 9 9 C 1.38590 * 110.99899 * 162.08494 * 4 3 2 10 10 N 1.31213 * 126.47818 * 68.88761 * 9 4 3 11 11 N 1.28518 * 109.86061 * 180.02562 * 10 9 4 12 12 C 1.30296 * 110.05991 * 0.02562 * 11 10 9 13 13 C 1.50695 * 126.34996 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.46928 * 245.91490 * 13 12 11 15 15 C 1.53005 * 109.47036 * 125.91711 * 13 12 11 16 16 C 1.50699 * 109.47408 * 5.91991 * 13 12 11 17 17 H 1.08000 * 119.99452 * 359.97438 * 16 13 12 18 18 C 1.37875 * 120.00239 * 180.02562 * 16 13 12 19 19 N 1.31521 * 119.99714 * 359.71227 * 18 16 13 20 20 Si 1.86799 * 120.00236 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47052 * 59.99370 * 20 18 16 22 22 H 1.48493 * 109.47136 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46895 * 299.99915 * 20 18 16 24 24 N 1.36461 * 126.46775 * 249.20776 * 9 4 3 25 25 C 1.46493 * 127.13938 * 359.97438 * 24 9 4 26 26 C 1.50701 * 109.47126 * 275.94617 * 25 24 9 27 27 C 1.31002 * 120.00337 * 125.00144 * 26 25 24 28 28 H 4.40885 * 5.52200 * 179.97438 * 4 1 2 29 29 H 1.09002 * 109.46708 * 136.99228 * 3 2 1 30 30 H 1.08999 * 109.47305 * 16.99549 * 3 2 1 31 31 H 1.09000 * 109.47465 * 186.04597 * 5 4 3 32 32 H 1.09005 * 109.47261 * 306.05041 * 5 4 3 33 33 H 1.09003 * 109.47342 * 49.97380 * 8 7 6 34 34 H 1.09005 * 109.47011 * 169.96771 * 8 7 6 35 35 H 1.08994 * 109.47681 * 289.96904 * 8 7 6 36 36 H 1.09002 * 109.47000 * 184.40440 * 14 13 12 37 37 H 1.09004 * 109.47345 * 304.40401 * 14 13 12 38 38 H 1.09001 * 109.47047 * 64.40557 * 14 13 12 39 39 H 1.09003 * 109.46987 * 299.99853 * 15 13 12 40 40 H 1.09001 * 109.46934 * 59.99479 * 15 13 12 41 41 H 1.08993 * 109.47066 * 179.97438 * 15 13 12 42 42 H 0.96995 * 119.99675 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.47221 * 35.94411 * 25 24 9 44 44 H 1.08996 * 109.47389 * 155.94537 * 25 24 9 45 45 H 1.07998 * 119.99941 * 305.00018 * 26 25 24 46 46 H 1.08001 * 120.00249 * 179.97438 * 27 26 25 47 47 H 1.07998 * 119.99722 * 359.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1355 0.3127 1.3494 5 6 2.9533 1.7370 1.6593 6 6 1.5154 2.0439 1.7288 7 6 0.3697 2.2891 1.7842 8 6 -1.0681 2.5968 1.8538 9 6 4.4620 -0.0615 1.4954 10 7 5.4976 0.4919 0.9099 11 7 6.5755 -0.1070 1.2718 12 6 6.2940 -1.0706 2.1025 13 6 7.2805 -2.0059 2.7528 14 6 7.0476 -3.4289 2.2411 15 6 7.0907 -1.9724 4.2707 16 6 8.6831 -1.5728 2.4123 17 1 8.8441 -0.7070 1.7871 18 6 9.7609 -2.2824 2.8981 19 7 9.5648 -3.3339 3.6632 20 14 11.4995 -1.7459 2.4754 21 1 11.7259 -0.3648 2.9720 22 1 12.4715 -2.6675 3.1164 23 1 11.6832 -1.7784 1.0022 24 7 4.9370 -1.0791 2.2707 25 6 4.1557 -1.9898 3.1109 26 6 3.8961 -1.3426 4.4469 27 6 2.6687 -1.2205 4.8882 28 1 -1.0501 0.0002 -0.0001 29 1 3.0090 0.7523 -0.7010 30 1 3.0098 -0.9819 -0.3004 31 1 3.4197 1.9628 2.6183 32 1 3.4164 2.3408 0.8789 33 1 -1.3211 3.3269 1.0849 34 1 -1.6430 1.6849 1.6921 35 1 -1.3050 3.0064 2.8357 36 1 7.7079 -4.1173 2.7686 37 1 6.0103 -3.7133 2.4176 38 1 7.2589 -3.4698 1.1725 39 1 7.2566 -0.9586 4.6352 40 1 6.0761 -2.2856 4.5170 41 1 7.8039 -2.6492 4.7410 42 1 10.3230 -3.8329 4.0053 43 1 3.2061 -2.2096 2.6231 44 1 4.7116 -2.9158 3.2577 45 1 4.7219 -0.9794 5.0405 46 1 2.4827 -0.7570 5.8458 47 1 1.8428 -1.5833 4.2943 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351839929.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:30 Heat of formation + Delta-G solvation = 228.329336 kcal Electronic energy + Delta-G solvation = -28152.403291 eV Core-core repulsion = 24534.481425 eV Total energy + Delta-G solvation = -3617.921866 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.40496 -38.20157 -36.27467 -35.19955 -34.02174 -33.01620 -32.37389 -31.25055 -29.77654 -28.41033 -27.04431 -26.55087 -25.93674 -25.22537 -24.54389 -21.97719 -20.60195 -20.15948 -19.02214 -18.35521 -17.40994 -16.77301 -16.14970 -15.70518 -15.55881 -15.10129 -14.83703 -14.68195 -14.45863 -13.89425 -13.72944 -13.52072 -13.44818 -13.39986 -13.09769 -12.78921 -12.59830 -12.23389 -11.87439 -11.48145 -11.35565 -11.08719 -10.98958 -10.90278 -10.66939 -10.63980 -10.57146 -10.21980 -10.14375 -9.98500 -9.91441 -9.76242 -9.59305 -9.48281 -9.39968 -8.95965 -8.60523 -8.42606 -8.18106 -6.03996 -4.09495 2.00481 2.19945 2.32492 2.67332 2.85671 3.02192 3.14152 3.36524 3.38874 3.45770 3.61289 3.98557 4.24627 4.38365 4.43904 4.88754 4.96810 5.07222 5.19366 5.25700 5.28588 5.32694 5.34218 5.40085 5.45772 5.50959 5.53008 5.62369 5.75723 5.82310 5.89730 5.97934 6.06325 6.46622 6.52404 6.56319 6.57581 6.60474 6.66417 6.73101 6.80112 7.11511 7.16013 7.35303 7.55748 7.59737 7.65080 7.75809 7.80876 8.07851 8.28860 8.96817 9.46974 9.58506 10.99888 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020320 B = 0.003360 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.620625 B = 8330.365566 C = 8816.274311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.166 4.166 3 C 0.174 3.826 4 N -0.450 5.450 5 C 0.185 3.815 6 C -0.172 4.172 7 C -0.176 4.176 8 C -0.036 4.036 9 C 0.299 3.701 10 N -0.313 5.313 11 N -0.286 5.286 12 C 0.250 3.750 13 C 0.146 3.854 14 C -0.131 4.131 15 C -0.140 4.140 16 C -0.494 4.494 17 H 0.077 0.923 18 C 0.064 3.936 19 N -0.895 5.895 20 Si 0.901 3.099 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.276 1.276 24 N -0.462 5.462 25 C 0.139 3.861 26 C -0.167 4.167 27 C -0.167 4.167 28 H 0.214 0.786 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.008 0.992 38 H 0.035 0.965 39 H 0.030 0.970 40 H 0.019 0.981 41 H 0.098 0.902 42 H 0.261 0.739 43 H 0.091 0.909 44 H 0.111 0.889 45 H 0.119 0.881 46 H 0.099 0.901 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.716 4.176 -0.498 20.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.167 4.167 3 C 0.047 3.953 4 N -0.174 5.174 5 C 0.059 3.941 6 C -0.173 4.173 7 C -0.177 4.177 8 C -0.092 4.092 9 C -0.056 4.056 10 N -0.158 5.158 11 N -0.124 5.124 12 C -0.017 4.017 13 C 0.143 3.857 14 C -0.189 4.189 15 C -0.198 4.198 16 C -0.532 4.532 17 H 0.095 0.905 18 C -0.137 4.137 19 N -0.534 5.534 20 Si 0.729 3.271 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.201 1.201 24 N -0.155 5.155 25 C 0.017 3.983 26 C -0.186 4.186 27 C -0.205 4.205 28 H 0.231 0.769 29 H 0.094 0.906 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.027 0.973 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.038 0.962 41 H 0.116 0.884 42 H 0.071 0.929 43 H 0.109 0.891 44 H 0.129 0.871 45 H 0.137 0.863 46 H 0.117 0.883 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.036 4.698 -0.958 19.630 hybrid contribution 0.271 -0.161 0.175 0.360 sum -18.765 4.537 -0.782 19.322 Atomic orbital electron populations 1.24620 0.95555 1.01645 0.99694 1.22541 0.93761 0.99853 1.00541 1.18994 0.85257 1.02909 0.88102 1.58226 1.12046 1.19570 1.27541 1.18883 0.86613 0.85662 1.02929 1.21722 0.93557 1.01064 1.00916 1.22111 0.93621 0.99993 1.01977 1.18816 0.85743 1.01964 1.02647 1.21804 0.90746 0.93904 0.99179 1.74548 0.95333 1.24031 1.21868 1.74146 1.17571 1.07252 1.13468 1.26292 0.80501 0.98142 0.96728 1.16949 0.89819 0.87914 0.91034 1.21940 0.97520 0.98908 1.00578 1.22085 0.99205 1.01312 0.97195 1.21030 0.87919 1.13282 1.31015 0.90509 1.24859 0.99212 0.94805 0.94789 1.69774 1.30871 1.18432 1.34322 0.86498 0.83445 0.78411 0.78778 1.20209 1.21477 1.20139 1.46395 1.08122 1.25934 1.35023 1.20997 0.96426 0.92461 0.88458 1.23206 0.98533 1.00410 0.96448 1.23805 0.96213 0.99563 1.00884 0.76949 0.90564 0.88464 0.88338 0.90517 0.90530 0.90318 0.90494 0.88485 0.97267 0.94572 0.95098 0.96224 0.88378 0.92859 0.89118 0.87096 0.86314 0.88252 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.07 17.26 29.55 0.51 -1.56 16 2 C -0.17 -2.09 11.13 -37.12 -0.41 -2.50 16 3 C 0.17 2.35 5.41 -6.61 -0.04 2.32 16 4 N -0.45 -6.71 4.52 -181.18 -0.82 -7.53 16 5 C 0.18 2.59 5.29 -6.61 -0.03 2.56 16 6 C -0.17 -2.26 11.17 -37.14 -0.41 -2.68 16 7 C -0.18 -2.01 12.03 -37.14 -0.45 -2.46 16 8 C -0.04 -0.25 10.29 34.37 0.35 0.10 16 9 C 0.30 5.43 6.34 -318.85 -2.02 3.40 16 10 N -0.31 -6.64 12.11 30.32 0.37 -6.27 16 11 N -0.29 -6.86 11.00 32.99 0.36 -6.50 16 12 C 0.25 5.56 6.34 -154.02 -0.98 4.58 16 13 C 0.15 3.40 0.47 -156.81 -0.07 3.32 16 14 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 15 C -0.14 -3.06 7.74 37.16 0.29 -2.77 16 16 C -0.49 -13.12 7.91 -34.44 -0.27 -13.39 16 17 H 0.08 2.16 6.95 -52.49 -0.36 1.80 16 18 C 0.06 1.67 5.15 -17.82 -0.09 1.58 16 19 N -0.89 -23.28 9.40 55.43 0.52 -22.76 16 20 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 N -0.46 -8.56 2.79 -115.37 -0.32 -8.89 16 25 C 0.14 2.11 5.62 -5.20 -0.03 2.08 16 26 C -0.17 -2.34 8.83 -36.03 -0.32 -2.66 16 27 C -0.17 -1.96 14.32 29.01 0.42 -1.54 16 28 H 0.21 1.46 7.80 -54.09 -0.42 1.04 16 29 H 0.08 1.01 7.91 -51.93 -0.41 0.60 16 30 H 0.10 1.33 7.94 -51.93 -0.41 0.92 16 31 H 0.10 1.42 8.05 -51.93 -0.42 1.01 16 32 H 0.08 1.07 7.97 -51.93 -0.41 0.65 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.10 2.31 6.21 -51.93 -0.32 1.99 16 37 H 0.01 0.17 5.72 -51.93 -0.30 -0.13 16 38 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.02 0.36 3.98 -51.93 -0.21 0.15 16 41 H 0.10 2.34 6.06 -51.93 -0.31 2.03 16 42 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 43 H 0.09 1.23 7.79 -51.93 -0.40 0.83 16 44 H 0.11 1.71 4.57 -51.93 -0.24 1.48 16 45 H 0.12 1.82 6.93 -52.49 -0.36 1.46 16 46 H 0.10 1.03 8.06 -52.49 -0.42 0.61 16 47 H 0.10 1.07 7.84 -52.49 -0.41 0.65 16 LS Contribution 386.88 15.07 5.83 5.83 Total: -1.00 -29.66 386.88 -9.01 -38.68 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -6.67 Total: 3.57 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -3.26 Total: -12.22 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.11 Total: -51.94 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.66 -9.01 -38.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351839929.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 267.007 kcal (2) G-P(sol) polarization free energy of solvation -29.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 237.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 228.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds