Wall clock time and date at job start Tue Mar 31 2020 15:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46897 * 109.46998 * 256.98998 * 3 2 1 5 5 C 1.46900 * 111.00212 * 286.03181 * 4 3 2 6 6 C 1.47197 * 109.47113 * 66.04825 * 5 4 3 7 7 C 3.01171 * 74.51098 * 217.93425 * 2 1 3 8 8 C 3.89961 * 54.90347 * 215.52181 * 2 1 3 9 9 C 1.38590 * 110.99899 * 162.08494 * 4 3 2 10 10 N 1.31213 * 126.47818 * 68.88761 * 9 4 3 11 11 N 1.28518 * 109.86061 * 180.02562 * 10 9 4 12 12 C 1.30296 * 110.05991 * 0.02562 * 11 10 9 13 13 C 1.50695 * 126.34996 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.46928 * 245.91490 * 13 12 11 15 15 C 1.53005 * 109.47036 * 125.91711 * 13 12 11 16 16 C 1.50699 * 109.47408 * 5.91991 * 13 12 11 17 17 H 1.08000 * 119.99452 * 359.97438 * 16 13 12 18 18 C 1.37875 * 120.00239 * 180.02562 * 16 13 12 19 19 N 1.31521 * 119.99714 * 359.71227 * 18 16 13 20 20 Si 1.86799 * 120.00236 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47052 * 59.99370 * 20 18 16 22 22 H 1.48493 * 109.47136 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46895 * 299.99915 * 20 18 16 24 24 N 1.36461 * 126.46775 * 249.20776 * 9 4 3 25 25 C 1.46493 * 127.13938 * 359.97438 * 24 9 4 26 26 C 1.50701 * 109.47126 * 275.94617 * 25 24 9 27 27 C 1.31002 * 120.00337 * 125.00144 * 26 25 24 28 28 H 4.40885 * 5.52200 * 179.97438 * 4 1 2 29 29 H 1.09002 * 109.46708 * 136.99228 * 3 2 1 30 30 H 1.08999 * 109.47305 * 16.99549 * 3 2 1 31 31 H 1.09000 * 109.47465 * 186.04597 * 5 4 3 32 32 H 1.09005 * 109.47261 * 306.05041 * 5 4 3 33 33 H 1.09003 * 109.47342 * 49.97380 * 8 7 6 34 34 H 1.09005 * 109.47011 * 169.96771 * 8 7 6 35 35 H 1.08994 * 109.47681 * 289.96904 * 8 7 6 36 36 H 1.09002 * 109.47000 * 184.40440 * 14 13 12 37 37 H 1.09004 * 109.47345 * 304.40401 * 14 13 12 38 38 H 1.09001 * 109.47047 * 64.40557 * 14 13 12 39 39 H 1.09003 * 109.46987 * 299.99853 * 15 13 12 40 40 H 1.09001 * 109.46934 * 59.99479 * 15 13 12 41 41 H 1.08993 * 109.47066 * 179.97438 * 15 13 12 42 42 H 0.96995 * 119.99675 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.47221 * 35.94411 * 25 24 9 44 44 H 1.08996 * 109.47389 * 155.94537 * 25 24 9 45 45 H 1.07998 * 119.99941 * 305.00018 * 26 25 24 46 46 H 1.08001 * 120.00249 * 179.97438 * 27 26 25 47 47 H 1.07998 * 119.99722 * 359.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1355 0.3127 1.3494 5 6 2.9533 1.7370 1.6593 6 6 1.5154 2.0439 1.7288 7 6 0.3697 2.2891 1.7842 8 6 -1.0681 2.5968 1.8538 9 6 4.4620 -0.0615 1.4954 10 7 5.4976 0.4919 0.9099 11 7 6.5755 -0.1070 1.2718 12 6 6.2940 -1.0706 2.1025 13 6 7.2805 -2.0059 2.7528 14 6 7.0476 -3.4289 2.2411 15 6 7.0907 -1.9724 4.2707 16 6 8.6831 -1.5728 2.4123 17 1 8.8441 -0.7070 1.7871 18 6 9.7609 -2.2824 2.8981 19 7 9.5648 -3.3339 3.6632 20 14 11.4995 -1.7459 2.4754 21 1 11.7259 -0.3648 2.9720 22 1 12.4715 -2.6675 3.1164 23 1 11.6832 -1.7784 1.0022 24 7 4.9370 -1.0791 2.2707 25 6 4.1557 -1.9898 3.1109 26 6 3.8961 -1.3426 4.4469 27 6 2.6687 -1.2205 4.8882 28 1 -1.0501 0.0002 -0.0001 29 1 3.0090 0.7523 -0.7010 30 1 3.0098 -0.9819 -0.3004 31 1 3.4197 1.9628 2.6183 32 1 3.4164 2.3408 0.8789 33 1 -1.3211 3.3269 1.0849 34 1 -1.6430 1.6849 1.6921 35 1 -1.3050 3.0064 2.8357 36 1 7.7079 -4.1173 2.7686 37 1 6.0103 -3.7133 2.4176 38 1 7.2589 -3.4698 1.1725 39 1 7.2566 -0.9586 4.6352 40 1 6.0761 -2.2856 4.5170 41 1 7.8039 -2.6492 4.7410 42 1 10.3230 -3.8329 4.0053 43 1 3.2061 -2.2096 2.6231 44 1 4.7116 -2.9158 3.2577 45 1 4.7219 -0.9794 5.0405 46 1 2.4827 -0.7570 5.8458 47 1 1.8428 -1.5833 4.2943 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351839929.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:29 Heat of formation + Delta-G solvation = 215.043619 kcal Electronic energy + Delta-G solvation = -28152.979403 eV Core-core repulsion = 24534.481425 eV Total energy + Delta-G solvation = -3618.497978 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.97016 -39.39743 -37.83350 -36.73331 -34.92453 -33.96039 -33.73933 -33.06225 -30.78985 -29.77257 -28.18644 -27.74274 -27.66734 -27.10638 -25.75534 -23.64380 -21.98370 -21.52435 -20.50446 -19.26450 -18.66628 -18.09211 -17.68407 -17.12619 -16.93550 -16.72149 -16.14804 -15.84332 -15.68652 -15.28569 -14.77249 -14.64355 -14.54070 -14.30809 -14.19698 -14.07984 -13.71650 -13.63285 -13.51036 -13.15783 -12.97311 -12.73578 -12.57881 -12.49143 -12.38336 -12.04051 -11.97479 -11.82896 -11.74920 -11.58783 -11.27121 -11.02303 -10.83991 -10.66271 -10.50740 -10.41140 -10.36454 -10.01217 -9.79836 -8.04419 -6.14997 0.74036 0.88310 1.27145 1.46045 1.46132 1.54719 1.77357 1.87386 1.91888 1.99640 2.16575 2.48874 2.88211 3.21901 3.35938 3.46736 3.69094 3.70416 3.84811 3.97337 4.12936 4.14617 4.25117 4.39707 4.42418 4.52532 4.59740 4.77807 4.79922 4.82413 4.89049 4.89745 4.90546 4.92906 4.97636 5.06371 5.11858 5.14553 5.28067 5.40732 5.50723 5.54021 5.60225 5.69800 5.77554 5.96793 6.07146 6.25948 6.39300 6.73835 6.76388 6.88074 7.50488 7.88401 8.96982 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020320 B = 0.003360 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.620625 B = 8330.365566 C = 8816.274311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.213 4.213 3 C 0.177 3.823 4 N -0.441 5.441 5 C 0.191 3.809 6 C -0.221 4.221 7 C -0.148 4.148 8 C -0.043 4.043 9 C 0.325 3.675 10 N -0.344 5.344 11 N -0.328 5.328 12 C 0.235 3.765 13 C 0.143 3.857 14 C -0.120 4.120 15 C -0.124 4.124 16 C -0.517 4.517 17 H 0.051 0.949 18 C 0.033 3.967 19 N -0.901 5.901 20 Si 0.946 3.054 21 H -0.281 1.281 22 H -0.277 1.277 23 H -0.280 1.280 24 N -0.457 5.457 25 C 0.137 3.863 26 C -0.197 4.197 27 C -0.133 4.133 28 H 0.252 0.748 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.039 0.961 38 H 0.019 0.981 39 H 0.014 0.986 40 H 0.050 0.950 41 H 0.079 0.921 42 H 0.263 0.737 43 H 0.111 0.889 44 H 0.107 0.893 45 H 0.101 0.899 46 H 0.117 0.883 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.827 4.096 0.105 24.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.214 4.214 3 C 0.051 3.949 4 N -0.166 5.166 5 C 0.065 3.935 6 C -0.221 4.221 7 C -0.150 4.150 8 C -0.098 4.098 9 C -0.032 4.032 10 N -0.188 5.188 11 N -0.167 5.167 12 C -0.034 4.034 13 C 0.140 3.860 14 C -0.178 4.178 15 C -0.183 4.183 16 C -0.555 4.555 17 H 0.069 0.931 18 C -0.167 4.167 19 N -0.540 5.540 20 Si 0.773 3.227 21 H -0.207 1.207 22 H -0.202 1.202 23 H -0.206 1.206 24 N -0.148 5.148 25 C 0.016 3.984 26 C -0.216 4.216 27 C -0.171 4.171 28 H 0.268 0.732 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.058 0.942 38 H 0.038 0.962 39 H 0.033 0.967 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.119 0.881 46 H 0.135 0.865 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -23.160 4.608 -0.344 23.616 hybrid contribution 1.287 -0.064 -0.010 1.288 sum -21.873 4.543 -0.354 22.343 Atomic orbital electron populations 1.25486 0.96220 0.99037 0.96992 1.22417 0.93731 1.02246 1.02991 1.18862 0.86800 1.02287 0.86969 1.58514 1.09314 1.20252 1.28503 1.18695 0.88039 0.84796 1.01976 1.21549 0.93651 1.03497 1.03434 1.23068 0.94510 0.97781 0.99630 1.19160 0.82845 1.03602 1.04182 1.22114 0.91564 0.92464 0.97050 1.74456 0.95638 1.25158 1.23503 1.74032 1.19396 1.08467 1.14777 1.25907 0.81948 0.98229 0.97294 1.16848 0.88763 0.88562 0.91820 1.21767 0.99040 0.97939 0.99056 1.21888 1.00488 0.99824 0.96065 1.21150 0.90265 1.12900 1.31216 0.93054 1.25341 1.01524 0.94989 0.94843 1.69847 1.31444 1.18484 1.34238 0.85802 0.80727 0.77976 0.78204 1.20661 1.20244 1.20610 1.46502 1.07090 1.26213 1.35020 1.21235 0.96629 0.91690 0.88881 1.22986 0.99132 1.03264 0.96205 1.24048 0.95433 0.96467 1.01116 0.73166 0.91153 0.89193 0.89538 0.91369 0.88808 0.88075 0.88955 0.90082 0.94193 0.96210 0.96661 0.93101 0.90271 0.92707 0.87059 0.87498 0.88052 0.86457 0.86927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 17.26 74.32 1.28 -1.43 16 2 C -0.21 -4.90 11.13 31.13 0.35 -4.56 16 3 C 0.18 4.77 5.41 84.50 0.46 5.22 16 4 N -0.44 -13.09 4.52 -727.13 -3.29 -16.38 16 5 C 0.19 5.40 5.29 84.50 0.45 5.85 16 6 C -0.22 -5.48 11.17 31.14 0.35 -5.13 16 7 C -0.15 -2.92 12.03 31.14 0.37 -2.55 16 8 C -0.04 -0.40 10.29 70.18 0.72 0.32 16 9 C 0.33 12.04 6.34 260.10 1.65 13.69 16 10 N -0.34 -15.26 12.11 -58.00 -0.70 -15.96 16 11 N -0.33 -16.58 11.00 -49.54 -0.55 -17.12 16 12 C 0.23 10.81 6.34 137.64 0.87 11.68 16 13 C 0.14 6.88 0.47 -53.67 -0.03 6.86 16 14 C -0.12 -5.40 8.08 71.98 0.58 -4.82 16 15 C -0.12 -5.56 7.74 71.98 0.56 -5.01 16 16 C -0.52 -28.62 7.91 25.60 0.20 -28.42 16 17 H 0.05 3.06 6.95 -2.91 -0.02 3.04 16 18 C 0.03 1.75 5.15 84.65 0.44 2.18 16 19 N -0.90 -47.61 9.40 21.45 0.20 -47.41 16 20 Si 0.95 44.25 29.54 68.60 2.03 46.27 16 21 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 23 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 24 N -0.46 -17.09 2.79 -518.92 -1.45 -18.54 16 25 C 0.14 3.98 5.62 85.63 0.48 4.46 16 26 C -0.20 -5.23 8.83 25.64 0.23 -5.00 16 27 C -0.13 -2.70 14.32 67.78 0.97 -1.73 16 28 H 0.25 1.92 7.80 -4.41 -0.03 1.89 16 29 H 0.07 1.93 7.91 -2.39 -0.02 1.92 16 30 H 0.09 2.49 7.94 -2.39 -0.02 2.47 16 31 H 0.09 2.58 8.05 -2.39 -0.02 2.56 16 32 H 0.07 1.99 7.97 -2.38 -0.02 1.97 16 33 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 35 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.08 3.92 6.21 -2.39 -0.01 3.91 16 37 H 0.04 1.51 5.72 -2.39 -0.01 1.49 16 38 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.05 1.90 3.98 -2.39 -0.01 1.89 16 41 H 0.08 3.85 6.06 -2.39 -0.01 3.84 16 42 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 43 H 0.11 2.77 7.79 -2.39 -0.02 2.75 16 44 H 0.11 3.16 4.57 -2.39 -0.01 3.15 16 45 H 0.10 3.07 6.93 -2.91 -0.02 3.05 16 46 H 0.12 2.00 8.06 -2.91 -0.02 1.97 16 47 H 0.11 1.98 7.84 -2.91 -0.02 1.96 16 Total: -1.00 -67.58 386.88 7.15 -60.43 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.97 Total: 17.08 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 9.93 Total: -8.36 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -5.78 Total: -115.41 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -67.58 7.15 -60.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351839929.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 275.472 kcal (2) G-P(sol) polarization free energy of solvation -67.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 207.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 215.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds