Wall clock time and date at job start Tue Mar 31 2020 15:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47019 * 2 1 4 4 N 1.30298 * 126.34516 * 272.84477 * 3 2 1 5 5 N 1.28530 * 110.05299 * 179.69175 * 4 3 2 6 6 C 1.31225 * 109.85709 * 0.45790 * 5 4 3 7 7 N 1.38582 * 126.47126 * 179.82470 * 6 5 4 8 8 C 1.46897 * 111.00193 * 102.93260 * 7 6 5 9 9 C 1.46901 * 110.99947 * 338.97669 * 7 6 5 10 10 H 1.09008 * 109.47067 * 59.99890 * 9 7 6 11 11 C 1.52998 * 109.47054 * 300.00404 * 9 7 6 12 12 C 1.50693 * 109.47179 * 180.02562 * 9 7 6 13 13 H 1.08004 * 119.99981 * 28.24617 * 12 9 7 14 14 C 1.37883 * 120.00113 * 208.24803 * 12 9 7 15 15 N 1.31507 * 119.99750 * 359.45732 * 14 12 9 16 16 Si 1.86795 * 119.99952 * 179.45830 * 14 12 9 17 17 H 1.48500 * 109.47173 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47295 * 300.00301 * 16 14 12 19 19 H 1.48506 * 109.47128 * 60.00000 * 16 14 12 20 20 N 1.36446 * 107.05431 * 359.55501 * 6 5 4 21 21 C 1.46497 * 127.13634 * 180.28600 * 20 6 5 22 22 C 1.53001 * 109.47363 * 272.54972 * 21 20 6 23 23 C 1.53000 * 109.46947 * 57.71636 * 22 21 20 24 24 C 1.52995 * 109.47416 * 177.71812 * 22 21 20 25 25 S 1.81400 * 109.47162 * 297.71891 * 22 21 20 26 26 C 1.81399 * 103.00133 * 179.97438 * 25 22 21 27 27 H 1.08996 * 109.47640 * 64.77517 * 1 2 3 28 28 H 1.08996 * 109.46911 * 184.77737 * 1 2 3 29 29 H 1.09001 * 109.46737 * 304.77459 * 1 2 3 30 30 H 1.09004 * 109.47266 * 240.00414 * 2 1 3 31 31 H 1.09000 * 109.47522 * 120.00175 * 2 1 3 32 32 H 1.09006 * 109.47083 * 290.47965 * 8 7 6 33 33 H 1.09003 * 109.46933 * 50.47485 * 8 7 6 34 34 H 1.08992 * 109.47032 * 170.47799 * 8 7 6 35 35 H 1.08999 * 109.47157 * 297.53256 * 11 9 7 36 36 H 1.08999 * 109.47597 * 57.53492 * 11 9 7 37 37 H 1.09001 * 109.46913 * 177.53535 * 11 9 7 38 38 H 0.96995 * 120.00351 * 355.47432 * 15 14 12 39 39 H 1.08998 * 109.47290 * 32.54959 * 21 20 6 40 40 H 1.09004 * 109.47390 * 152.54991 * 21 20 6 41 41 H 1.09003 * 109.47003 * 54.05594 * 23 22 21 42 42 H 1.08994 * 109.47180 * 174.05812 * 23 22 21 43 43 H 1.09004 * 109.47255 * 294.06095 * 23 22 21 44 44 H 1.08996 * 109.47283 * 59.99966 * 24 22 21 45 45 H 1.09003 * 109.47503 * 180.02562 * 24 22 21 46 46 H 1.09004 * 109.46924 * 300.00031 * 24 22 21 47 47 H 1.08995 * 109.46719 * 299.99748 * 26 25 22 48 48 H 1.09004 * 109.46932 * 60.00025 * 26 25 22 49 49 H 1.08993 * 109.47259 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2406 2.1663 -1.0482 5 7 2.6625 3.3256 -0.6878 6 6 2.7560 3.3791 0.6201 7 7 3.1783 4.4639 1.3720 8 6 2.0369 5.1544 1.9870 9 6 3.9773 5.3897 0.5580 10 1 3.3750 5.7544 -0.2741 11 6 5.2078 4.6599 0.0156 12 6 4.4181 6.5535 1.4078 13 1 4.5537 6.4247 2.4715 14 6 4.6483 7.7828 0.8273 15 7 4.4934 7.9369 -0.4695 16 14 5.1800 9.2292 1.8830 17 1 5.3613 10.4278 1.0252 18 1 4.1392 9.5046 2.9058 19 1 6.4629 8.9049 2.5571 20 7 2.3533 2.1670 1.1000 21 6 2.2795 1.7514 2.5028 22 6 3.6325 1.1854 2.9389 23 6 4.7190 2.2417 2.7280 24 6 3.5725 0.8040 4.4194 25 16 4.0194 -0.2857 1.9507 26 6 5.6313 -0.8029 2.6026 27 1 -0.3634 0.4379 -0.9296 28 1 -0.3633 -1.0241 0.0856 29 1 -0.3633 0.5861 0.8442 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.4550 5.6550 1.2130 33 1 1.4077 4.4285 2.5022 34 1 2.4009 5.8921 2.7021 35 1 5.8324 4.3333 0.8470 36 1 4.8901 3.7924 -0.5629 37 1 5.7775 5.3342 -0.6239 38 1 4.2815 7.1720 -1.0269 39 1 2.0282 2.6112 3.1238 40 1 1.5121 0.9854 2.6150 41 1 4.4341 3.1627 3.2367 42 1 5.6626 1.8787 3.1352 43 1 4.8344 2.4364 1.6617 44 1 2.7985 0.0515 4.5696 45 1 4.5365 0.4012 4.7302 46 1 3.3400 1.6880 5.0132 47 1 6.3551 -0.0005 2.4604 48 1 5.5389 -1.0248 3.6658 49 1 5.9681 -1.6944 2.0737 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460460863.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:08 Heat of formation + Delta-G solvation = 80.666606 kcal Electronic energy + Delta-G solvation = -28245.158586 eV Core-core repulsion = 24756.277535 eV Total energy + Delta-G solvation = -3488.881051 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.53254 -37.32556 -36.99027 -34.05841 -33.31226 -32.46882 -29.42749 -29.10427 -28.65484 -27.43339 -26.82222 -25.08280 -24.40927 -23.73481 -21.84243 -21.26400 -19.93098 -19.69111 -17.10789 -16.68318 -16.21031 -15.96879 -15.52930 -14.95530 -14.56614 -14.41507 -14.11938 -13.95846 -13.86290 -13.73156 -13.49206 -13.23723 -12.88382 -12.77052 -12.62080 -12.32283 -12.13612 -11.89487 -11.71721 -11.55697 -11.50139 -11.37242 -11.29688 -11.14196 -10.99075 -10.84731 -10.67393 -10.52139 -10.35549 -10.13140 -9.87689 -9.75441 -9.66335 -8.87697 -8.45729 -8.44550 -7.78450 -7.46582 -6.39187 -4.13756 1.50216 2.24004 2.38703 2.67306 3.39927 3.41705 3.44138 3.60827 4.34220 4.35986 4.48276 4.57121 4.59088 4.75301 4.95014 4.96129 5.00646 5.06483 5.18992 5.26274 5.32851 5.35034 5.47098 5.49144 5.55449 5.62099 5.66612 5.73207 5.80983 5.84496 6.00801 6.02521 6.12346 6.15387 6.29199 6.39171 6.52031 6.56570 6.64808 6.80617 6.86429 7.07380 7.21753 7.42009 7.64114 7.85657 8.30337 8.46983 8.80616 9.38279 9.59938 10.98190 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.004566 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.750949 B = 6131.232632 C = 6994.412952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.030 4.030 3 C 0.173 3.827 4 N -0.291 5.291 5 N -0.321 5.321 6 C 0.380 3.620 7 N -0.456 5.456 8 C 0.050 3.950 9 C 0.212 3.788 10 H 0.029 0.971 11 C -0.129 4.129 12 C -0.591 4.591 13 H 0.056 0.944 14 C 0.024 3.976 15 N -0.905 5.905 16 Si 1.069 2.931 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.288 1.288 20 N -0.477 5.477 21 C 0.140 3.860 22 C -0.044 4.044 23 C -0.139 4.139 24 C -0.140 4.140 25 S -0.245 6.245 26 C -0.127 4.127 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.031 0.969 33 H 0.039 0.961 34 H 0.092 0.908 35 H 0.037 0.963 36 H 0.031 0.969 37 H 0.049 0.951 38 H 0.274 0.726 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.049 0.951 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.394 -18.049 10.731 21.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.070 4.070 3 C -0.095 4.095 4 N -0.130 5.130 5 N -0.164 5.164 6 C 0.024 3.976 7 N -0.182 5.182 8 C -0.097 4.097 9 C 0.107 3.893 10 H 0.047 0.953 11 C -0.188 4.188 12 C -0.630 4.630 13 H 0.075 0.925 14 C -0.182 4.182 15 N -0.540 5.540 16 Si 0.897 3.103 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.214 1.214 20 N -0.173 5.173 21 C 0.015 3.985 22 C -0.155 4.155 23 C -0.198 4.198 24 C -0.199 4.199 25 S -0.018 6.018 26 C -0.295 4.295 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.111 0.889 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.068 0.932 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.093 0.907 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.238 -16.605 8.775 19.253 hybrid contribution 0.126 -1.252 1.899 2.278 sum -4.112 -17.857 10.674 21.207 Atomic orbital electron populations 1.21753 0.94311 1.01801 1.02510 1.19951 0.95608 0.87130 1.04360 1.24440 1.05116 0.97325 0.82606 1.73938 1.15842 0.99097 1.24127 1.74754 1.20677 1.12839 1.08158 1.23053 0.97502 0.87619 0.89408 1.59348 1.19186 1.07640 1.31983 1.22170 0.90632 0.97551 0.99386 1.19485 0.89658 0.88308 0.91837 0.95348 1.21881 0.99058 0.98798 0.99036 1.21753 1.50449 0.95214 0.95594 0.92532 1.25803 0.94443 1.00246 0.97677 1.70744 1.43450 1.34993 1.04828 0.83543 0.76348 0.75685 0.74697 1.20799 1.21473 1.21430 1.46117 1.52259 1.11558 1.07344 1.21604 0.95694 1.01242 0.80010 1.23172 0.98998 0.95921 0.97407 1.22163 0.95379 0.97574 1.04683 1.22054 1.02921 1.02352 0.92560 1.86797 1.25814 1.34600 1.54547 1.23462 0.97467 1.04763 1.03828 0.91848 0.91762 0.93136 0.88822 0.89578 0.95038 0.94202 0.88899 0.94340 0.95030 0.93184 0.91413 0.87456 0.88770 0.89817 0.93230 0.90519 0.91357 0.91837 0.91039 0.90394 0.90682 0.88428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.89 37.16 0.37 -1.12 16 2 C -0.03 -0.37 5.75 -27.88 -0.16 -0.53 16 3 C 0.17 2.88 6.59 -154.01 -1.01 1.87 16 4 N -0.29 -6.09 12.18 32.99 0.40 -5.68 16 5 N -0.32 -7.40 10.06 30.31 0.30 -7.10 16 6 C 0.38 7.67 4.33 -318.87 -1.38 6.29 16 7 N -0.46 -9.46 3.37 -176.08 -0.59 -10.05 16 8 C 0.05 0.95 9.03 60.06 0.54 1.49 16 9 C 0.21 5.26 1.43 -68.87 -0.10 5.16 16 10 H 0.03 0.82 6.47 -51.92 -0.34 0.48 16 11 C -0.13 -3.15 8.63 37.16 0.32 -2.83 16 12 C -0.59 -15.52 7.12 -34.44 -0.25 -15.77 16 13 H 0.06 1.46 7.60 -52.48 -0.40 1.07 16 14 C 0.02 0.67 5.46 -17.82 -0.10 0.57 16 15 N -0.90 -26.87 13.60 55.43 0.75 -26.12 16 16 Si 1.07 24.22 29.90 -169.99 -5.08 19.14 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 20 N -0.48 -7.73 2.35 -114.08 -0.27 -8.00 16 21 C 0.14 1.70 4.85 -4.04 -0.02 1.68 16 22 C -0.04 -0.50 0.76 -90.62 -0.07 -0.57 16 23 C -0.14 -1.99 6.91 37.16 0.26 -1.74 16 24 C -0.14 -1.18 8.32 37.15 0.31 -0.87 16 25 S -0.24 -2.85 17.49 -107.50 -1.88 -4.73 16 26 C -0.13 -1.18 9.88 101.05 1.00 -0.18 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.09 0.96 5.16 -51.74 -0.27 0.69 16 32 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 33 H 0.04 0.62 6.65 -51.93 -0.35 0.27 16 34 H 0.09 1.78 7.06 -51.93 -0.37 1.42 16 35 H 0.04 0.89 7.80 -51.93 -0.41 0.49 16 36 H 0.03 0.76 6.19 -51.93 -0.32 0.44 16 37 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.27 8.33 6.69 -40.82 -0.27 8.06 16 39 H 0.11 1.26 6.65 -51.93 -0.35 0.91 16 40 H 0.09 0.94 7.67 -51.93 -0.40 0.54 16 41 H 0.08 1.29 7.70 -51.93 -0.40 0.89 16 42 H 0.05 0.64 7.00 -51.93 -0.36 0.28 16 43 H 0.08 1.39 5.83 -51.93 -0.30 1.09 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.51 6.68 -51.93 -0.35 0.16 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.08 0.79 7.16 -51.93 -0.37 0.42 16 48 H 0.07 0.58 7.00 -51.92 -0.36 0.22 16 49 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 381.79 15.07 5.75 5.75 Total: -1.00 -31.73 381.79 -9.11 -40.84 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -8.20 Total: 2.51 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -0.29 Total: -6.56 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.60 Total: -56.95 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: -5.08 Total: 19.14 kcal Atomic # 16 Polarization: -2.85 SS G_CDS: -1.88 Total: -4.73 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.73 -9.11 -40.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460460863.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.506 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds