Wall clock time and date at job start Tue Mar 31 2020 15:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47019 * 2 1 4 4 N 1.30298 * 126.34516 * 272.84477 * 3 2 1 5 5 N 1.28530 * 110.05299 * 179.69175 * 4 3 2 6 6 C 1.31225 * 109.85709 * 0.45790 * 5 4 3 7 7 N 1.38582 * 126.47126 * 179.82470 * 6 5 4 8 8 C 1.46897 * 111.00193 * 102.93260 * 7 6 5 9 9 C 1.46901 * 110.99947 * 338.97669 * 7 6 5 10 10 H 1.09008 * 109.47067 * 59.99890 * 9 7 6 11 11 C 1.52998 * 109.47054 * 300.00404 * 9 7 6 12 12 C 1.50693 * 109.47179 * 180.02562 * 9 7 6 13 13 H 1.08004 * 119.99981 * 28.24617 * 12 9 7 14 14 C 1.37883 * 120.00113 * 208.24803 * 12 9 7 15 15 N 1.31507 * 119.99750 * 359.45732 * 14 12 9 16 16 Si 1.86795 * 119.99952 * 179.45830 * 14 12 9 17 17 H 1.48500 * 109.47173 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47295 * 300.00301 * 16 14 12 19 19 H 1.48506 * 109.47128 * 60.00000 * 16 14 12 20 20 N 1.36446 * 107.05431 * 359.55501 * 6 5 4 21 21 C 1.46497 * 127.13634 * 180.28600 * 20 6 5 22 22 C 1.53001 * 109.47363 * 272.54972 * 21 20 6 23 23 C 1.53000 * 109.46947 * 57.71636 * 22 21 20 24 24 C 1.52995 * 109.47416 * 177.71812 * 22 21 20 25 25 S 1.81400 * 109.47162 * 297.71891 * 22 21 20 26 26 C 1.81399 * 103.00133 * 179.97438 * 25 22 21 27 27 H 1.08996 * 109.47640 * 64.77517 * 1 2 3 28 28 H 1.08996 * 109.46911 * 184.77737 * 1 2 3 29 29 H 1.09001 * 109.46737 * 304.77459 * 1 2 3 30 30 H 1.09004 * 109.47266 * 240.00414 * 2 1 3 31 31 H 1.09000 * 109.47522 * 120.00175 * 2 1 3 32 32 H 1.09006 * 109.47083 * 290.47965 * 8 7 6 33 33 H 1.09003 * 109.46933 * 50.47485 * 8 7 6 34 34 H 1.08992 * 109.47032 * 170.47799 * 8 7 6 35 35 H 1.08999 * 109.47157 * 297.53256 * 11 9 7 36 36 H 1.08999 * 109.47597 * 57.53492 * 11 9 7 37 37 H 1.09001 * 109.46913 * 177.53535 * 11 9 7 38 38 H 0.96995 * 120.00351 * 355.47432 * 15 14 12 39 39 H 1.08998 * 109.47290 * 32.54959 * 21 20 6 40 40 H 1.09004 * 109.47390 * 152.54991 * 21 20 6 41 41 H 1.09003 * 109.47003 * 54.05594 * 23 22 21 42 42 H 1.08994 * 109.47180 * 174.05812 * 23 22 21 43 43 H 1.09004 * 109.47255 * 294.06095 * 23 22 21 44 44 H 1.08996 * 109.47283 * 59.99966 * 24 22 21 45 45 H 1.09003 * 109.47503 * 180.02562 * 24 22 21 46 46 H 1.09004 * 109.46924 * 300.00031 * 24 22 21 47 47 H 1.08995 * 109.46719 * 299.99748 * 26 25 22 48 48 H 1.09004 * 109.46932 * 60.00025 * 26 25 22 49 49 H 1.08993 * 109.47259 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2406 2.1663 -1.0482 5 7 2.6625 3.3256 -0.6878 6 6 2.7560 3.3791 0.6201 7 7 3.1783 4.4639 1.3720 8 6 2.0369 5.1544 1.9870 9 6 3.9773 5.3897 0.5580 10 1 3.3750 5.7544 -0.2741 11 6 5.2078 4.6599 0.0156 12 6 4.4181 6.5535 1.4078 13 1 4.5537 6.4247 2.4715 14 6 4.6483 7.7828 0.8273 15 7 4.4934 7.9369 -0.4695 16 14 5.1800 9.2292 1.8830 17 1 5.3613 10.4278 1.0252 18 1 4.1392 9.5046 2.9058 19 1 6.4629 8.9049 2.5571 20 7 2.3533 2.1670 1.1000 21 6 2.2795 1.7514 2.5028 22 6 3.6325 1.1854 2.9389 23 6 4.7190 2.2417 2.7280 24 6 3.5725 0.8040 4.4194 25 16 4.0194 -0.2857 1.9507 26 6 5.6313 -0.8029 2.6026 27 1 -0.3634 0.4379 -0.9296 28 1 -0.3633 -1.0241 0.0856 29 1 -0.3633 0.5861 0.8442 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.4550 5.6550 1.2130 33 1 1.4077 4.4285 2.5022 34 1 2.4009 5.8921 2.7021 35 1 5.8324 4.3333 0.8470 36 1 4.8901 3.7924 -0.5629 37 1 5.7775 5.3342 -0.6239 38 1 4.2815 7.1720 -1.0269 39 1 2.0282 2.6112 3.1238 40 1 1.5121 0.9854 2.6150 41 1 4.4341 3.1627 3.2367 42 1 5.6626 1.8787 3.1352 43 1 4.8344 2.4364 1.6617 44 1 2.7985 0.0515 4.5696 45 1 4.5365 0.4012 4.7302 46 1 3.3400 1.6880 5.0132 47 1 6.3551 -0.0005 2.4604 48 1 5.5389 -1.0248 3.6658 49 1 5.9681 -1.6944 2.0737 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460460863.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:07 Heat of formation + Delta-G solvation = 63.383589 kcal Electronic energy + Delta-G solvation = -28245.908034 eV Core-core repulsion = 24756.277535 eV Total energy + Delta-G solvation = -3489.630499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.99362 -39.02007 -38.12703 -35.30940 -34.98840 -33.85925 -31.37293 -30.12411 -29.88836 -28.42081 -27.85702 -26.90350 -26.18994 -24.90958 -23.63450 -22.31040 -21.36203 -21.12912 -18.69207 -18.33972 -17.61720 -17.22228 -16.88610 -16.13039 -15.85778 -15.68560 -15.50087 -15.31730 -15.00312 -14.97541 -14.67947 -14.42667 -14.25268 -13.69264 -13.61943 -13.53157 -13.44309 -13.22253 -13.14597 -12.95798 -12.76708 -12.64419 -12.57583 -12.44391 -12.40173 -12.28039 -12.18785 -12.15665 -12.06437 -11.92413 -11.38186 -10.99440 -10.71074 -10.63358 -10.55342 -10.27176 -9.19262 -8.65699 -8.59705 -6.34848 0.63752 0.85836 1.34328 1.54786 1.56815 1.64890 1.82931 1.92706 2.58393 2.91689 3.24400 3.38743 3.42293 3.56659 3.79312 3.98518 4.01350 4.08605 4.26110 4.29631 4.32007 4.34355 4.44574 4.47575 4.57245 4.58258 4.62754 4.65886 4.70648 4.74087 4.78163 4.82063 4.86973 4.90310 4.96640 4.98895 5.05936 5.16402 5.18246 5.20613 5.29524 5.33913 5.37787 5.69677 5.77640 5.97965 6.28405 6.46285 6.64757 7.48132 7.88516 8.76360 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.004566 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.750949 B = 6131.232632 C = 6994.412952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.028 4.028 3 C 0.198 3.802 4 N -0.339 5.339 5 N -0.374 5.374 6 C 0.370 3.630 7 N -0.443 5.443 8 C 0.052 3.948 9 C 0.222 3.778 10 H -0.018 1.018 11 C -0.109 4.109 12 C -0.586 4.586 13 H 0.065 0.935 14 C -0.027 4.027 15 N -0.937 5.937 16 Si 1.118 2.882 17 H -0.292 1.292 18 H -0.264 1.264 19 H -0.269 1.269 20 N -0.466 5.466 21 C 0.128 3.872 22 C -0.035 4.035 23 C -0.132 4.132 24 C -0.133 4.133 25 S -0.277 6.277 26 C -0.118 4.118 27 H 0.046 0.954 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.003 0.997 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.046 0.954 36 H 0.024 0.976 37 H 0.025 0.975 38 H 0.254 0.746 39 H 0.116 0.884 40 H 0.127 0.873 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.033 0.967 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.096 0.904 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.055 -20.418 14.418 25.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.068 4.068 3 C -0.072 4.072 4 N -0.177 5.177 5 N -0.217 5.217 6 C 0.012 3.988 7 N -0.168 5.168 8 C -0.095 4.095 9 C 0.116 3.884 10 H 0.000 1.000 11 C -0.167 4.167 12 C -0.625 4.625 13 H 0.083 0.917 14 C -0.226 4.226 15 N -0.574 5.574 16 Si 0.939 3.061 17 H -0.218 1.218 18 H -0.189 1.189 19 H -0.195 1.195 20 N -0.160 5.160 21 C 0.005 3.995 22 C -0.145 4.145 23 C -0.191 4.191 24 C -0.192 4.192 25 S -0.050 6.050 26 C -0.286 4.286 27 H 0.065 0.935 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.022 0.978 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.065 0.935 36 H 0.043 0.957 37 H 0.044 0.956 38 H 0.064 0.936 39 H 0.134 0.866 40 H 0.145 0.855 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.052 0.948 44 H 0.106 0.894 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.085 0.915 48 H 0.115 0.885 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.917 -19.024 12.498 23.287 hybrid contribution 0.323 -0.699 0.751 1.075 sum -4.593 -19.723 13.249 24.200 Atomic orbital electron populations 1.21730 0.92320 1.03867 1.01848 1.20215 0.97101 0.84082 1.05416 1.25309 1.01897 0.98214 0.81741 1.73841 1.18370 0.99276 1.26240 1.74624 1.22296 1.14564 1.10170 1.22826 0.98427 0.88536 0.88998 1.59217 1.19698 1.07043 1.30808 1.22229 0.90297 0.98495 0.98496 1.19132 0.89523 0.88957 0.90763 0.99993 1.21644 0.98742 0.97748 0.98606 1.21986 1.49129 0.95469 0.95869 0.91692 1.27299 0.93910 1.03621 0.97755 1.70885 1.46349 1.34098 1.06079 0.82937 0.77390 0.72158 0.73624 1.21836 1.18882 1.19462 1.46223 1.50902 1.09849 1.09027 1.22085 0.97335 1.02634 0.77474 1.23113 0.97153 0.94742 0.99512 1.22025 0.97255 0.98266 1.01526 1.22036 1.04124 1.03305 0.89716 1.86825 1.27814 1.34389 1.55968 1.23497 0.95246 1.04638 1.05211 0.93457 0.88463 0.92749 0.88626 0.87644 0.97806 0.90128 0.88940 0.93485 0.95656 0.95622 0.93553 0.86606 0.85502 0.91076 0.92203 0.94763 0.89364 0.91145 0.90227 0.91522 0.88505 0.87341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.89 71.98 0.71 -1.74 16 2 C -0.03 -0.63 5.75 29.85 0.17 -0.45 16 3 C 0.20 6.47 6.59 137.64 0.91 7.37 16 4 N -0.34 -14.65 12.18 -49.53 -0.60 -15.25 16 5 N -0.37 -18.12 10.06 -58.00 -0.58 -18.70 16 6 C 0.37 15.26 4.33 260.11 1.13 16.39 16 7 N -0.44 -18.73 3.37 -711.01 -2.40 -21.13 16 8 C 0.05 1.97 9.03 127.69 1.15 3.13 16 9 C 0.22 11.57 1.43 44.17 0.06 11.63 16 10 H -0.02 -1.09 6.47 -2.38 -0.02 -1.11 16 11 C -0.11 -5.60 8.63 71.98 0.62 -4.98 16 12 C -0.59 -31.32 7.12 25.60 0.18 -31.14 16 13 H 0.06 3.32 7.60 -2.91 -0.02 3.30 16 14 C -0.03 -1.52 5.46 84.66 0.46 -1.05 16 15 N -0.94 -58.19 13.60 21.45 0.29 -57.90 16 16 Si 1.12 48.63 29.90 68.60 2.05 50.68 16 17 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 18 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 20 N -0.47 -14.64 2.35 -514.85 -1.21 -15.84 16 21 C 0.13 2.72 4.85 86.38 0.42 3.14 16 22 C -0.03 -0.69 0.76 -10.79 -0.01 -0.70 16 23 C -0.13 -3.61 6.91 71.98 0.50 -3.11 16 24 C -0.13 -1.66 8.32 71.98 0.60 -1.07 16 25 S -0.28 -5.72 17.49 -56.49 -0.99 -6.71 16 26 C -0.12 -1.87 9.88 113.37 1.12 -0.75 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.11 1.98 5.16 -2.51 -0.01 1.96 16 32 H 0.00 0.14 8.13 -2.38 -0.02 0.12 16 33 H 0.08 2.36 6.65 -2.39 -0.02 2.34 16 34 H 0.09 3.49 7.06 -2.39 -0.02 3.47 16 35 H 0.05 2.27 7.80 -2.39 -0.02 2.25 16 36 H 0.02 1.30 6.19 -2.39 -0.01 1.28 16 37 H 0.02 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.25 16.55 6.69 -92.71 -0.62 15.93 16 39 H 0.12 2.30 6.65 -2.39 -0.02 2.28 16 40 H 0.13 1.93 7.67 -2.38 -0.02 1.91 16 41 H 0.07 2.10 7.70 -2.39 -0.02 2.08 16 42 H 0.06 1.46 7.00 -2.39 -0.02 1.44 16 43 H 0.03 1.23 5.83 -2.38 -0.01 1.21 16 44 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.07 0.82 6.68 -2.39 -0.02 0.81 16 46 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.07 1.22 7.16 -2.39 -0.02 1.20 16 48 H 0.10 1.12 7.00 -2.39 -0.02 1.11 16 49 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -74.92 381.79 5.66 -69.25 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 1.08 Total: 18.94 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 8.03 Total: -3.34 kcal Atomic # 7 Polarization: -124.33 SS G_CDS: -4.50 Total: -128.83 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 2.05 Total: 50.68 kcal Atomic # 16 Polarization: -5.72 SS G_CDS: -0.99 Total: -6.71 kcal Total: -74.92 5.66 -69.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460460863.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.637 kcal (2) G-P(sol) polarization free energy of solvation -74.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds