Wall clock time and date at job start Tue Mar 31 2020 15:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46682 * 2 1 4 4 C 1.50700 * 109.47047 * 240.00329 * 2 1 3 5 5 H 1.08001 * 119.99785 * 239.99516 * 4 2 1 6 6 C 1.37882 * 120.00498 * 59.99576 * 4 2 1 7 7 N 1.31508 * 119.99400 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00157 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46590 * 90.00212 * 8 6 4 10 10 H 1.48495 * 109.47194 * 209.99894 * 8 6 4 11 11 H 1.48499 * 109.47277 * 330.00341 * 8 6 4 12 12 N 1.46898 * 109.47141 * 120.00011 * 2 1 3 13 13 C 1.46901 * 110.99833 * 176.04892 * 12 2 1 14 14 C 1.38402 * 110.99949 * 300.00044 * 12 2 1 15 15 N 1.31377 * 126.37009 * 343.59516 * 14 12 2 16 16 N 1.28517 * 110.07787 * 179.97438 * 15 14 12 17 17 C 1.31255 * 109.93507 * 359.97438 * 16 15 14 18 18 C 1.47852 * 126.47239 * 179.97438 * 17 16 15 19 19 C 1.39567 * 120.14302 * 198.48493 * 18 17 16 20 20 C 1.37965 * 119.85046 * 179.77361 * 19 18 17 21 21 C 1.38356 * 120.14341 * 0.50876 * 20 19 18 22 22 C 1.38359 * 120.29111 * 359.74323 * 21 20 19 23 23 C 1.37955 * 120.14494 * 0.02562 * 22 21 20 24 24 N 1.36468 * 126.36922 * 163.28594 * 14 12 2 25 25 C 1.46497 * 127.16308 * 0.03392 * 24 14 12 26 26 H 1.08997 * 115.54962 * 90.73974 * 25 24 14 27 27 C 1.53007 * 117.49632 * 236.40321 * 25 24 14 28 28 C 1.52999 * 117.50187 * 305.02362 * 25 24 14 29 29 H 1.08999 * 117.49749 * 145.02271 * 28 25 24 30 30 C 1.52996 * 117.49608 * 0.02562 * 28 25 24 31 31 H 1.08997 * 109.47362 * 60.00286 * 1 2 3 32 32 H 1.09001 * 109.46682 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46987 * 300.00037 * 1 2 3 34 34 H 0.97005 * 119.99539 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.47192 * 54.60821 * 13 12 2 36 36 H 1.08997 * 109.47542 * 174.61379 * 13 12 2 37 37 H 1.09004 * 109.47239 * 294.61126 * 13 12 2 38 38 H 1.08003 * 120.07358 * 0.02562 * 19 18 17 39 39 H 1.07997 * 119.92585 * 180.27405 * 20 19 18 40 40 H 1.08001 * 119.85223 * 179.76817 * 21 20 19 41 41 H 1.07998 * 119.92620 * 180.02562 * 22 21 20 42 42 H 1.07996 * 120.07261 * 179.97438 * 23 22 21 43 43 H 1.09001 * 117.49332 * 214.98273 * 27 25 24 44 44 H 1.08996 * 117.49716 * 0.02562 * 27 25 24 45 45 H 1.08999 * 109.47554 * 67.91983 * 30 28 25 46 46 H 1.08996 * 109.47136 * 187.91850 * 30 28 25 47 47 H 1.08998 * 109.47193 * 307.91666 * 30 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 1.3448 -2.1615 -4.4124 10 1 2.4872 -0.1402 -5.1121 11 1 3.6309 -1.7565 -3.7120 12 7 2.0197 -0.6925 1.1994 13 6 3.4851 -0.7944 1.1870 14 6 1.5759 -0.0649 2.3504 15 7 1.0828 1.1499 2.4347 16 7 0.7697 1.4154 3.6525 17 6 1.0434 0.3861 4.4196 18 6 0.8291 0.2965 5.8797 19 6 1.4986 -0.6727 6.6282 20 6 1.2977 -0.7478 7.9911 21 6 0.4268 0.1281 8.6143 22 6 -0.2441 1.0878 7.8773 23 6 -0.0485 1.1767 6.5146 24 7 1.5637 -0.5950 3.6078 25 6 2.0137 -1.9300 4.0098 26 1 3.0594 -2.0035 4.3081 27 6 1.0074 -2.8259 4.7350 28 6 1.3984 -3.1302 3.2875 29 1 2.0396 -3.9937 3.1102 30 6 0.3608 -2.8443 2.2001 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.7088 1.1613 -3.4844 35 1 3.9174 0.1985 1.0627 36 1 3.8275 -1.2245 2.1282 37 1 3.7980 -1.4329 0.3608 38 1 2.1756 -1.3597 6.1422 39 1 1.8186 -1.4944 8.5721 40 1 0.2702 0.0626 9.6809 41 1 -0.9223 1.7688 8.3699 42 1 -0.5731 1.9260 5.9403 43 1 1.3915 -3.4892 5.5101 44 1 0.0107 -2.4222 4.9125 45 1 0.8464 -2.3603 1.3527 46 1 -0.0907 -3.7810 1.8735 47 1 -0.4124 -2.1880 2.5993 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493364682.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:17 Heat of formation + Delta-G solvation = 159.626944 kcal Electronic energy + Delta-G solvation = -28828.471420 eV Core-core repulsion = 25207.570395 eV Total energy + Delta-G solvation = -3620.901025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.53961 -39.08092 -38.04685 -37.10129 -33.05296 -32.81739 -31.71077 -31.04126 -29.25153 -28.58133 -28.30106 -25.59012 -24.55509 -23.65723 -22.97530 -22.68632 -21.55389 -20.90958 -20.05133 -18.99873 -17.15779 -16.99991 -16.52164 -15.99087 -15.43251 -15.25139 -15.16960 -14.81625 -14.34434 -13.83236 -13.77155 -13.54109 -13.36548 -13.00971 -12.76275 -12.55634 -12.42133 -12.18739 -11.94132 -11.65328 -11.42509 -11.22684 -11.16481 -11.05023 -11.00467 -10.70879 -10.59688 -10.37042 -10.32175 -10.20147 -10.07814 -9.90995 -9.59260 -9.50698 -9.06443 -9.04341 -8.52156 -8.28527 -7.33427 -6.06114 -4.13973 0.88329 1.28815 2.33775 2.53592 3.27259 3.29473 3.34240 3.35619 3.39565 3.83304 4.26676 4.30313 4.46980 4.52997 4.57104 4.79151 4.82789 4.85821 5.01471 5.25508 5.28147 5.34982 5.36240 5.46808 5.59101 5.65004 5.73864 5.77265 5.86259 5.91967 6.02098 6.09009 6.16215 6.24088 6.30217 6.33882 6.37438 6.46221 6.52437 6.79331 6.86471 6.89210 7.02481 7.12843 7.24521 7.41940 7.67025 7.72231 7.93439 8.23215 8.41886 8.87956 9.26301 9.50979 11.00188 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.022959 B = 0.003569 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.296840 B = 7843.532116 C = 8471.937642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.228 3.772 3 H 0.025 0.975 4 C -0.517 4.517 5 H 0.065 0.935 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.453 5.453 13 C 0.044 3.956 14 C 0.398 3.602 15 N -0.312 5.312 16 N -0.268 5.268 17 C 0.183 3.817 18 C 0.006 3.994 19 C -0.110 4.110 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.083 4.083 24 N -0.451 5.451 25 C 0.051 3.949 26 H 0.129 0.871 27 C -0.170 4.170 28 C -0.113 4.113 29 H 0.117 0.883 30 C -0.147 4.147 31 H 0.089 0.911 32 H 0.027 0.973 33 H 0.024 0.976 34 H 0.263 0.737 35 H 0.033 0.967 36 H 0.044 0.956 37 H 0.092 0.908 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.134 0.866 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.120 0.880 46 H 0.055 0.945 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.390 -7.388 19.894 21.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.124 3.876 3 H 0.043 0.957 4 C -0.555 4.555 5 H 0.083 0.917 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.178 5.178 13 C -0.103 4.103 14 C 0.044 3.956 15 N -0.157 5.157 16 N -0.109 5.109 17 C -0.080 4.080 18 C 0.003 3.997 19 C -0.129 4.129 20 C -0.138 4.138 21 C -0.137 4.137 22 C -0.137 4.137 23 C -0.103 4.103 24 N -0.145 5.145 25 C -0.054 4.054 26 H 0.146 0.854 27 C -0.208 4.208 28 C -0.132 4.132 29 H 0.135 0.865 30 C -0.204 4.204 31 H 0.107 0.893 32 H 0.046 0.954 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.111 0.889 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.144 0.856 42 H 0.152 0.848 43 H 0.127 0.873 44 H 0.120 0.880 45 H 0.138 0.862 46 H 0.074 0.926 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.679 -6.356 19.202 20.239 hybrid contribution 1.018 -1.063 -0.450 1.539 sum 1.696 -7.419 18.753 20.238 Atomic orbital electron populations 1.21875 0.96923 0.99165 1.01444 1.19388 0.93068 0.92912 0.82254 0.95743 1.21042 1.32256 1.12788 0.89459 0.91705 1.24894 0.95007 0.94958 0.98951 1.69922 1.35986 1.22457 1.23671 0.86487 0.79130 0.79259 0.82432 1.20636 1.21246 1.19904 1.59156 1.10575 1.48700 0.99323 1.22265 0.85148 1.01428 1.01459 1.23036 0.99460 0.88396 0.84702 1.74882 1.20166 1.10177 1.10514 1.74299 1.17886 1.21458 0.97284 1.22419 1.05152 0.87489 0.92933 1.17479 0.98301 0.97364 0.86506 1.21415 0.99554 0.97847 0.94133 1.20990 0.99084 0.99642 0.94112 1.21232 0.96918 0.95680 0.99861 1.21082 1.00136 0.98868 0.93650 1.21233 0.96574 0.97996 0.94539 1.45569 1.49225 1.12416 1.07330 1.21954 0.97149 0.78543 1.07742 0.85399 1.23578 0.99688 1.01064 0.96435 1.22768 1.00880 0.96189 0.93356 0.86523 1.21825 0.97266 1.01480 0.99792 0.89289 0.95397 0.95702 0.92727 0.94809 0.93749 0.88900 0.85477 0.85869 0.86059 0.85607 0.84786 0.87334 0.88047 0.86198 0.92599 0.93818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.66 37.16 0.32 -3.13 16 2 C 0.23 5.69 1.71 -68.86 -0.12 5.58 16 3 H 0.02 0.71 7.94 -51.93 -0.41 0.30 16 4 C -0.52 -13.41 7.98 -34.44 -0.27 -13.69 16 5 H 0.06 1.62 6.41 -52.49 -0.34 1.28 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -24.89 11.32 55.43 0.63 -24.26 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 N -0.45 -9.41 1.97 -176.09 -0.35 -9.76 16 13 C 0.04 0.81 9.08 60.06 0.55 1.36 16 14 C 0.40 8.20 5.07 -318.91 -1.62 6.58 16 15 N -0.31 -7.24 9.74 30.31 0.30 -6.95 16 16 N -0.27 -5.66 12.01 32.59 0.39 -5.27 16 17 C 0.18 3.24 7.64 -153.78 -1.17 2.06 16 18 C 0.01 0.09 5.81 -104.97 -0.61 -0.52 16 19 C -0.11 -1.22 8.04 -39.19 -0.32 -1.54 16 20 C -0.12 -1.09 10.03 -39.64 -0.40 -1.49 16 21 C -0.12 -1.04 10.04 -39.49 -0.40 -1.44 16 22 C -0.12 -1.18 10.03 -39.64 -0.40 -1.58 16 23 C -0.08 -1.06 9.70 -39.19 -0.38 -1.44 16 24 N -0.45 -7.64 2.83 -107.60 -0.30 -7.95 16 25 C 0.05 0.65 3.78 -67.93 -0.26 0.39 16 26 H 0.13 1.36 8.00 -51.93 -0.42 0.94 16 27 C -0.17 -1.78 7.60 -26.73 -0.20 -1.98 16 28 C -0.11 -1.38 6.40 -90.62 -0.58 -1.96 16 29 H 0.12 1.18 8.14 -51.93 -0.42 0.75 16 30 C -0.15 -2.30 8.72 37.16 0.32 -1.97 16 31 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 32 H 0.03 0.67 7.61 -51.93 -0.40 0.28 16 33 H 0.02 0.62 6.06 -51.93 -0.31 0.30 16 34 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.03 0.66 8.13 -51.93 -0.42 0.23 16 36 H 0.04 0.68 7.22 -51.93 -0.37 0.31 16 37 H 0.09 1.69 6.44 -51.93 -0.33 1.36 16 38 H 0.13 1.29 4.84 -52.48 -0.25 1.04 16 39 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 41 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.13 1.78 7.97 -52.49 -0.42 1.36 16 43 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.10 1.24 8.10 -51.93 -0.42 0.82 16 45 H 0.12 2.27 4.62 -51.93 -0.24 2.03 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.04 0.76 7.97 -51.93 -0.41 0.34 16 LS Contribution 368.63 15.07 5.56 5.56 Total: -1.00 -30.74 368.63 -11.17 -41.91 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.74 Total: 4.30 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -5.62 Total: -13.14 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.66 Total: -54.19 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.74 -11.17 -41.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493364682.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.536 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds