Wall clock time and date at job start Tue Mar 31 2020 15:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47000 * 2 1 4 4 C 1.50702 * 109.47284 * 120.00316 * 2 1 3 5 5 H 1.08001 * 119.99927 * 119.99698 * 4 2 1 6 6 C 1.37872 * 120.00095 * 299.99667 * 4 2 1 7 7 N 1.31520 * 119.99959 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00250 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46678 * 60.00060 * 8 6 4 10 10 H 1.48490 * 109.47208 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46907 * 300.00522 * 8 6 4 12 12 N 1.46899 * 109.46722 * 240.00398 * 2 1 3 13 13 C 1.46899 * 111.00106 * 306.04638 * 12 2 1 14 14 C 1.38408 * 111.00227 * 70.00120 * 12 2 1 15 15 N 1.31379 * 126.36695 * 0.02562 * 14 12 2 16 16 N 1.28513 * 110.07800 * 179.97438 * 15 14 12 17 17 C 1.31263 * 109.93365 * 359.74306 * 16 15 14 18 18 C 1.47849 * 126.47107 * 180.27400 * 17 16 15 19 19 C 1.39570 * 120.14469 * 162.73727 * 18 17 16 20 20 C 1.37956 * 119.85501 * 179.70023 * 19 18 17 21 21 C 1.38354 * 120.14624 * 0.59386 * 20 19 18 22 22 C 1.38361 * 120.28957 * 359.67942 * 21 20 19 23 23 C 1.37960 * 120.14188 * 0.02562 * 22 21 20 24 24 N 1.36465 * 126.37588 * 179.97438 * 14 12 2 25 25 C 1.46505 * 127.16102 * 359.97438 * 24 14 12 26 26 H 1.08994 * 115.55238 * 116.60262 * 25 24 14 27 27 C 1.53001 * 117.49679 * 330.93226 * 25 24 14 28 28 C 1.52995 * 60.00284 * 252.48788 * 27 25 24 29 29 H 1.09001 * 117.49461 * 107.48907 * 28 27 25 30 30 C 1.52997 * 117.50317 * 252.51114 * 28 27 25 31 31 H 1.09002 * 109.46968 * 299.99671 * 1 2 3 32 32 H 1.09001 * 109.47117 * 59.99274 * 1 2 3 33 33 H 1.08997 * 109.47000 * 180.02562 * 1 2 3 34 34 H 0.96994 * 119.99897 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.47204 * 183.95585 * 13 12 2 36 36 H 1.08999 * 109.46911 * 303.95321 * 13 12 2 37 37 H 1.08994 * 109.47072 * 63.95693 * 13 12 2 38 38 H 1.07998 * 120.06889 * 359.97438 * 19 18 17 39 39 H 1.08005 * 119.92597 * 180.27196 * 20 19 18 40 40 H 1.07995 * 119.85878 * 179.69504 * 21 20 19 41 41 H 1.08000 * 119.92829 * 180.02562 * 22 21 20 42 42 H 1.08004 * 120.07466 * 179.97438 * 23 22 21 43 43 H 1.09004 * 117.50231 * 359.97438 * 27 25 24 44 44 H 1.09001 * 117.50001 * 144.99836 * 27 25 24 45 45 H 1.09003 * 109.47081 * 128.62150 * 30 28 27 46 46 H 1.09000 * 109.47529 * 248.62208 * 30 28 27 47 47 H 1.08995 * 109.47098 * 8.62090 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8296 2.6035 8 14 2.3215 -1.1205 4.0079 9 1 3.8065 -1.1211 4.0080 10 1 1.8262 -0.4209 5.2203 11 1 1.8259 -2.5205 4.0075 12 7 2.0196 -0.6924 -1.1995 13 6 1.4342 -2.0354 -1.3080 14 6 1.7682 0.0517 -2.3391 15 7 1.1758 1.2232 -2.3896 16 7 1.1060 1.6302 -3.6066 17 6 1.6545 0.7457 -4.4065 18 6 1.7778 0.8472 -5.8763 19 6 2.6812 0.0334 -6.5617 20 6 2.7869 0.1286 -7.9339 21 6 2.0089 1.0370 -8.6294 22 6 1.1155 1.8507 -7.9554 23 6 0.9956 1.7611 -6.5840 24 7 2.0905 -0.2945 -3.6192 25 6 2.7665 -1.5165 -4.0620 26 1 2.1812 -2.1692 -4.7097 27 6 3.7396 -2.1792 -3.0848 28 6 4.2738 -1.4394 -4.3128 29 1 4.7628 -0.4792 -4.1486 30 6 4.8442 -2.2842 -5.4538 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 0.7090 1.1611 3.4844 35 1 1.8662 -2.5520 -2.1650 36 1 1.6465 -2.5987 -0.3993 37 1 0.3555 -1.9519 -1.4400 38 1 3.2928 -0.6725 -6.0194 39 1 3.4824 -0.5037 -8.4659 40 1 2.0990 1.1111 -9.7030 41 1 0.5107 2.5574 -8.5042 42 1 0.2982 2.3971 -6.0589 43 1 3.8773 -1.7057 -2.1127 44 1 3.7945 -3.2678 -3.0897 45 1 4.3801 -1.9858 -6.3939 46 1 5.9216 -2.1310 -5.5159 47 1 4.6373 -3.3374 -5.2646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493364687.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:24 Heat of formation + Delta-G solvation = 161.577422 kcal Electronic energy + Delta-G solvation = -28486.067874 eV Core-core repulsion = 24865.251428 eV Total energy + Delta-G solvation = -3620.816446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.53998 -39.08397 -38.33066 -37.24781 -33.17075 -32.87744 -31.77517 -31.09966 -28.91225 -28.77239 -28.28029 -25.53171 -25.21520 -23.78742 -23.29905 -22.29222 -21.32216 -21.05878 -20.27817 -19.13340 -17.60200 -16.77337 -16.14455 -15.86130 -15.68822 -15.48665 -14.82005 -14.61991 -14.46373 -14.18460 -13.84676 -13.81023 -13.35486 -13.26809 -12.89329 -12.81925 -12.49423 -12.28311 -11.74672 -11.60351 -11.53477 -11.51259 -11.21681 -11.06200 -10.97138 -10.93250 -10.79655 -10.65723 -10.33665 -10.19710 -10.08619 -9.78383 -9.74178 -9.48256 -9.06305 -8.96688 -8.56631 -8.40234 -7.28368 -6.05201 -4.12752 0.88944 1.29803 2.34864 2.48581 3.28680 3.29105 3.33597 3.34438 3.35695 3.85900 4.19459 4.30458 4.40772 4.45110 4.53013 4.71176 4.78675 4.84146 4.96443 5.03377 5.25054 5.26334 5.30143 5.38432 5.46363 5.53421 5.57450 5.71643 5.72672 5.78388 5.89119 5.95200 5.98982 6.07380 6.13209 6.23315 6.32059 6.38460 6.45147 6.54197 6.76898 6.81926 6.94840 7.02081 7.13082 7.43837 7.59358 7.71869 7.95478 8.23616 8.39962 8.88471 9.28629 9.51854 11.01238 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019605 B = 0.003558 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.883749 B = 7868.243688 C = 8984.185992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.226 3.774 3 H 0.057 0.943 4 C -0.514 4.514 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.446 5.446 13 C 0.023 3.977 14 C 0.397 3.603 15 N -0.314 5.314 16 N -0.265 5.265 17 C 0.181 3.819 18 C 0.007 3.993 19 C -0.129 4.129 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.084 4.084 24 N -0.461 5.461 25 C 0.054 3.946 26 H 0.132 0.868 27 C -0.153 4.153 28 C -0.155 4.155 29 H 0.112 0.888 30 C -0.127 4.127 31 H 0.092 0.908 32 H 0.029 0.971 33 H 0.024 0.976 34 H 0.263 0.737 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.034 0.966 38 H 0.142 0.858 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.112 0.888 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.793 -6.783 -20.958 22.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.122 3.878 3 H 0.075 0.925 4 C -0.553 4.553 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.169 5.169 13 C -0.124 4.124 14 C 0.042 3.958 15 N -0.159 5.159 16 N -0.105 5.105 17 C -0.082 4.082 18 C 0.005 3.995 19 C -0.148 4.148 20 C -0.138 4.138 21 C -0.138 4.138 22 C -0.137 4.137 23 C -0.104 4.104 24 N -0.157 5.157 25 C -0.051 4.051 26 H 0.150 0.850 27 C -0.190 4.190 28 C -0.175 4.175 29 H 0.130 0.870 30 C -0.185 4.185 31 H 0.111 0.889 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.053 0.947 38 H 0.159 0.841 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.144 0.856 42 H 0.153 0.847 43 H 0.151 0.849 44 H 0.130 0.870 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.496 -5.476 -20.169 21.378 hybrid contribution 0.188 -1.452 0.483 1.541 sum 4.684 -6.928 -19.687 21.389 Atomic orbital electron populations 1.22363 0.99120 0.99047 1.02251 1.19422 0.91192 0.94921 0.82222 0.92519 1.20954 1.31923 1.13021 0.89404 0.91868 1.24893 0.95007 0.95045 0.98926 1.69907 1.35978 1.22504 1.23795 0.86533 0.79173 0.79509 0.81998 1.20196 1.21262 1.20299 1.59302 1.55021 1.03248 0.99314 1.22608 0.97562 0.88943 1.03241 1.23357 0.94900 0.93929 0.83588 1.74911 1.19688 1.10268 1.11067 1.74286 1.16811 1.22752 0.96660 1.22386 1.05034 0.87823 0.93003 1.17498 0.97746 0.97984 0.86297 1.21871 0.98301 0.99766 0.94901 1.20993 0.99871 0.99196 0.93744 1.21235 0.96485 0.96214 0.99879 1.21086 0.99019 0.99632 0.93952 1.21244 0.98236 0.97101 0.93858 1.45612 1.47057 1.16675 1.06369 1.22040 0.89965 0.87899 1.05184 0.85039 1.23855 0.97955 1.00490 0.96717 1.22952 0.93341 1.02307 0.98859 0.87030 1.21524 1.01421 0.99064 0.96448 0.88926 0.95253 0.95667 0.92660 0.92218 0.88737 0.94740 0.84094 0.85915 0.86058 0.85594 0.84747 0.84928 0.86986 0.91617 0.91202 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 8.17 37.16 0.30 -3.96 16 2 C 0.23 5.76 2.00 -68.86 -0.14 5.62 16 3 H 0.06 1.67 7.75 -51.93 -0.40 1.26 16 4 C -0.51 -13.60 7.91 -34.44 -0.27 -13.88 16 5 H 0.06 1.61 7.12 -52.49 -0.37 1.24 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -25.15 11.32 55.43 0.63 -24.53 16 8 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.45 -9.49 3.33 -176.09 -0.59 -10.08 16 13 C 0.02 0.42 7.83 60.06 0.47 0.89 16 14 C 0.40 8.38 6.55 -318.91 -2.09 6.29 16 15 N -0.31 -7.42 9.60 30.31 0.29 -7.13 16 16 N -0.26 -5.69 11.99 32.59 0.39 -5.30 16 17 C 0.18 3.27 7.71 -153.79 -1.19 2.08 16 18 C 0.01 0.11 5.87 -104.97 -0.62 -0.51 16 19 C -0.13 -1.50 9.24 -39.19 -0.36 -1.87 16 20 C -0.12 -1.13 10.03 -39.64 -0.40 -1.53 16 21 C -0.12 -1.08 10.04 -39.49 -0.40 -1.47 16 22 C -0.12 -1.20 10.03 -39.64 -0.40 -1.60 16 23 C -0.08 -1.10 9.70 -39.19 -0.38 -1.48 16 24 N -0.46 -7.99 3.15 -107.60 -0.34 -8.33 16 25 C 0.05 0.68 3.57 -67.93 -0.24 0.44 16 26 H 0.13 1.42 8.14 -51.93 -0.42 0.99 16 27 C -0.15 -1.79 7.11 -26.73 -0.19 -1.98 16 28 C -0.16 -1.64 4.90 -90.62 -0.44 -2.08 16 29 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 30 C -0.13 -0.91 9.90 37.16 0.37 -0.55 16 31 H 0.09 2.57 6.07 -51.93 -0.32 2.25 16 32 H 0.03 0.73 6.33 -51.93 -0.33 0.40 16 33 H 0.02 0.59 6.42 -51.93 -0.33 0.26 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.06 0.87 4.35 -51.93 -0.23 0.65 16 36 H 0.09 1.74 6.76 -51.93 -0.35 1.39 16 37 H 0.03 0.65 6.46 -51.93 -0.34 0.32 16 38 H 0.14 1.49 1.71 -52.49 -0.09 1.40 16 39 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 40 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.13 1.80 7.96 -52.48 -0.42 1.38 16 43 H 0.13 2.00 6.34 -51.93 -0.33 1.67 16 44 H 0.11 1.00 8.05 -51.93 -0.42 0.59 16 45 H 0.07 0.43 6.54 -51.93 -0.34 0.09 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 LS Contribution 362.78 15.07 5.47 5.47 Total: -1.00 -31.55 362.78 -11.58 -43.13 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -6.34 Total: 4.93 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -6.06 Total: -13.92 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.38 Total: -55.36 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.55 -11.58 -43.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493364687.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.706 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds