Wall clock time and date at job start Tue Mar 31 2020 15:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47000 * 2 1 4 4 C 1.50702 * 109.47284 * 120.00316 * 2 1 3 5 5 H 1.08001 * 119.99927 * 119.99698 * 4 2 1 6 6 C 1.37872 * 120.00095 * 299.99667 * 4 2 1 7 7 N 1.31520 * 119.99959 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00250 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46678 * 60.00060 * 8 6 4 10 10 H 1.48490 * 109.47208 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46907 * 300.00522 * 8 6 4 12 12 N 1.46899 * 109.46722 * 240.00398 * 2 1 3 13 13 C 1.46899 * 111.00106 * 306.04638 * 12 2 1 14 14 C 1.38408 * 111.00227 * 70.00120 * 12 2 1 15 15 N 1.31379 * 126.36695 * 0.02562 * 14 12 2 16 16 N 1.28513 * 110.07800 * 179.97438 * 15 14 12 17 17 C 1.31263 * 109.93365 * 359.74306 * 16 15 14 18 18 C 1.47849 * 126.47107 * 180.27400 * 17 16 15 19 19 C 1.39570 * 120.14469 * 162.73727 * 18 17 16 20 20 C 1.37956 * 119.85501 * 179.70023 * 19 18 17 21 21 C 1.38354 * 120.14624 * 0.59386 * 20 19 18 22 22 C 1.38361 * 120.28957 * 359.67942 * 21 20 19 23 23 C 1.37960 * 120.14188 * 0.02562 * 22 21 20 24 24 N 1.36465 * 126.37588 * 179.97438 * 14 12 2 25 25 C 1.46505 * 127.16102 * 359.97438 * 24 14 12 26 26 H 1.08994 * 115.55238 * 116.60262 * 25 24 14 27 27 C 1.53001 * 117.49679 * 330.93226 * 25 24 14 28 28 C 1.52995 * 60.00284 * 252.48788 * 27 25 24 29 29 H 1.09001 * 117.49461 * 107.48907 * 28 27 25 30 30 C 1.52997 * 117.50317 * 252.51114 * 28 27 25 31 31 H 1.09002 * 109.46968 * 299.99671 * 1 2 3 32 32 H 1.09001 * 109.47117 * 59.99274 * 1 2 3 33 33 H 1.08997 * 109.47000 * 180.02562 * 1 2 3 34 34 H 0.96994 * 119.99897 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.47204 * 183.95585 * 13 12 2 36 36 H 1.08999 * 109.46911 * 303.95321 * 13 12 2 37 37 H 1.08994 * 109.47072 * 63.95693 * 13 12 2 38 38 H 1.07998 * 120.06889 * 359.97438 * 19 18 17 39 39 H 1.08005 * 119.92597 * 180.27196 * 20 19 18 40 40 H 1.07995 * 119.85878 * 179.69504 * 21 20 19 41 41 H 1.08000 * 119.92829 * 180.02562 * 22 21 20 42 42 H 1.08004 * 120.07466 * 179.97438 * 23 22 21 43 43 H 1.09004 * 117.50231 * 359.97438 * 27 25 24 44 44 H 1.09001 * 117.50001 * 144.99836 * 27 25 24 45 45 H 1.09003 * 109.47081 * 128.62150 * 30 28 27 46 46 H 1.09000 * 109.47529 * 248.62208 * 30 28 27 47 47 H 1.08995 * 109.47098 * 8.62090 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8296 2.6035 8 14 2.3215 -1.1205 4.0079 9 1 3.8065 -1.1211 4.0080 10 1 1.8262 -0.4209 5.2203 11 1 1.8259 -2.5205 4.0075 12 7 2.0196 -0.6924 -1.1995 13 6 1.4342 -2.0354 -1.3080 14 6 1.7682 0.0517 -2.3391 15 7 1.1758 1.2232 -2.3896 16 7 1.1060 1.6302 -3.6066 17 6 1.6545 0.7457 -4.4065 18 6 1.7778 0.8472 -5.8763 19 6 2.6812 0.0334 -6.5617 20 6 2.7869 0.1286 -7.9339 21 6 2.0089 1.0370 -8.6294 22 6 1.1155 1.8507 -7.9554 23 6 0.9956 1.7611 -6.5840 24 7 2.0905 -0.2945 -3.6192 25 6 2.7665 -1.5165 -4.0620 26 1 2.1812 -2.1692 -4.7097 27 6 3.7396 -2.1792 -3.0848 28 6 4.2738 -1.4394 -4.3128 29 1 4.7628 -0.4792 -4.1486 30 6 4.8442 -2.2842 -5.4538 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 0.7090 1.1611 3.4844 35 1 1.8662 -2.5520 -2.1650 36 1 1.6465 -2.5987 -0.3993 37 1 0.3555 -1.9519 -1.4400 38 1 3.2928 -0.6725 -6.0194 39 1 3.4824 -0.5037 -8.4659 40 1 2.0990 1.1111 -9.7030 41 1 0.5107 2.5574 -8.5042 42 1 0.2982 2.3971 -6.0589 43 1 3.8773 -1.7057 -2.1127 44 1 3.7945 -3.2678 -3.0897 45 1 4.3801 -1.9858 -6.3939 46 1 5.9216 -2.1310 -5.5159 47 1 4.6373 -3.3374 -5.2646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493364687.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:23 Heat of formation + Delta-G solvation = 146.030167 kcal Electronic energy + Delta-G solvation = -28486.742054 eV Core-core repulsion = 24865.251428 eV Total energy + Delta-G solvation = -3621.490626 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.00082 -40.00588 -39.49259 -38.79985 -34.96180 -34.30449 -32.97929 -31.94913 -30.77386 -30.00795 -29.20806 -27.35989 -26.98702 -25.03694 -24.44710 -23.20647 -22.91327 -22.04713 -21.40162 -20.71999 -18.77248 -18.30668 -17.62407 -17.22924 -17.18694 -16.62904 -16.50891 -15.80303 -15.57960 -15.37534 -14.93829 -14.85308 -14.68086 -14.49240 -14.35457 -13.75649 -13.56480 -13.42041 -13.15738 -13.10098 -12.94476 -12.74469 -12.65881 -12.57479 -12.40155 -12.31627 -12.23738 -12.03668 -11.95547 -11.90839 -11.53774 -11.24578 -11.05079 -10.94428 -10.64214 -10.51407 -9.89642 -9.82501 -8.85202 -8.13058 -6.28675 -0.12822 0.46868 1.02535 1.17553 1.44801 1.47451 1.55111 1.86162 2.35670 2.41233 2.88635 2.93069 3.14650 3.16585 3.45472 3.52569 3.78621 3.88106 4.04474 4.09144 4.21024 4.26484 4.30349 4.44383 4.45925 4.50636 4.57052 4.62809 4.76612 4.81734 4.84410 4.89802 4.92605 4.97798 4.99944 5.03446 5.10383 5.11829 5.15150 5.33713 5.37024 5.49288 5.54325 5.57141 5.61500 5.61760 5.82690 6.01508 6.05945 6.17102 6.51985 6.80410 7.40237 7.75381 8.93773 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019605 B = 0.003558 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.883749 B = 7868.243688 C = 8984.185992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.239 3.761 3 H 0.004 0.996 4 C -0.523 4.523 5 H 0.074 0.926 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.971 3.029 9 H -0.270 1.270 10 H -0.289 1.289 11 H -0.263 1.263 12 N -0.443 5.443 13 C 0.027 3.973 14 C 0.377 3.623 15 N -0.367 5.367 16 N -0.317 5.317 17 C 0.205 3.795 18 C -0.033 4.033 19 C -0.126 4.126 20 C -0.114 4.114 21 C -0.103 4.103 22 C -0.119 4.119 23 C -0.101 4.101 24 N -0.453 5.453 25 C 0.029 3.971 26 H 0.160 0.840 27 C -0.155 4.155 28 C -0.134 4.134 29 H 0.087 0.913 30 C -0.122 4.122 31 H 0.064 0.936 32 H 0.020 0.980 33 H 0.036 0.964 34 H 0.263 0.737 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.020 0.980 38 H 0.151 0.849 39 H 0.162 0.838 40 H 0.160 0.840 41 H 0.150 0.850 42 H 0.114 0.886 43 H 0.097 0.903 44 H 0.149 0.851 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.847 -10.113 -24.643 27.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.133 3.867 3 H 0.022 0.978 4 C -0.561 4.561 5 H 0.092 0.908 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.796 3.204 9 H -0.195 1.195 10 H -0.215 1.215 11 H -0.187 1.187 12 N -0.165 5.165 13 C -0.119 4.119 14 C 0.020 3.980 15 N -0.212 5.212 16 N -0.156 5.156 17 C -0.061 4.061 18 C -0.036 4.036 19 C -0.145 4.145 20 C -0.132 4.132 21 C -0.122 4.122 22 C -0.137 4.137 23 C -0.121 4.121 24 N -0.148 5.148 25 C -0.073 4.073 26 H 0.177 0.823 27 C -0.192 4.192 28 C -0.153 4.153 29 H 0.105 0.895 30 C -0.179 4.179 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.039 0.961 38 H 0.168 0.832 39 H 0.180 0.820 40 H 0.178 0.822 41 H 0.168 0.832 42 H 0.132 0.868 43 H 0.115 0.885 44 H 0.167 0.833 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.563 -8.828 -23.891 26.301 hybrid contribution -0.406 -0.358 1.340 1.445 sum 6.157 -9.186 -22.551 25.116 Atomic orbital electron populations 1.22133 0.99423 0.99013 1.00345 1.18969 0.90730 0.92704 0.84287 0.97845 1.21257 1.31836 1.13199 0.89852 0.90827 1.25817 0.95058 0.95662 1.02256 1.70085 1.37321 1.24178 1.24369 0.85411 0.78682 0.78728 0.77596 1.19514 1.21455 1.18728 1.59209 1.55177 1.03942 0.98216 1.22689 0.96836 0.87506 1.04852 1.23233 0.95992 0.93822 0.84906 1.74733 1.21629 1.12040 1.12763 1.74167 1.20014 1.24877 0.96501 1.23189 1.01762 0.86586 0.94535 1.17680 1.00834 1.00894 0.84199 1.22051 0.97313 0.99023 0.96128 1.21456 0.99910 0.99191 0.92614 1.21748 0.94374 0.94275 1.01774 1.21391 0.99533 1.00257 0.92527 1.21279 0.98373 0.97060 0.95427 1.45784 1.46544 1.17818 1.04638 1.22635 0.91283 0.86789 1.06638 0.82283 1.23893 0.97711 1.02308 0.95337 1.22981 0.91146 1.01640 0.99549 0.89471 1.21578 1.01872 0.99325 0.95112 0.91686 0.96140 0.94512 0.92816 0.88354 0.88893 0.96087 0.83185 0.82004 0.82221 0.83195 0.86767 0.88506 0.83327 0.90192 0.90162 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -8.11 8.17 71.98 0.59 -7.52 16 2 C 0.24 12.97 2.00 44.17 0.09 13.06 16 3 H 0.00 0.23 7.75 -2.39 -0.02 0.21 16 4 C -0.52 -28.58 7.91 25.60 0.20 -28.38 16 5 H 0.07 3.78 7.12 -2.91 -0.02 3.76 16 6 C 0.01 0.63 5.30 84.65 0.45 1.08 16 7 N -0.92 -54.94 11.32 21.45 0.24 -54.69 16 8 Si 0.97 43.18 29.54 68.60 2.03 45.21 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 12 N -0.44 -19.81 3.33 -711.04 -2.37 -22.18 16 13 C 0.03 1.00 7.83 127.69 1.00 2.00 16 14 C 0.38 16.96 6.55 260.12 1.70 18.66 16 15 N -0.37 -18.94 9.60 -58.02 -0.56 -19.50 16 16 N -0.32 -14.80 11.99 -50.81 -0.61 -15.41 16 17 C 0.20 7.75 7.71 136.22 1.05 8.80 16 18 C -0.03 -0.96 5.87 -20.09 -0.12 -1.08 16 19 C -0.13 -2.57 9.24 22.52 0.21 -2.37 16 20 C -0.11 -1.57 10.03 22.23 0.22 -1.34 16 21 C -0.10 -1.35 10.04 22.33 0.22 -1.13 16 22 C -0.12 -2.10 10.03 22.23 0.22 -1.88 16 23 C -0.10 -2.64 9.70 22.52 0.22 -2.42 16 24 N -0.45 -16.13 3.15 -494.34 -1.56 -17.69 16 25 C 0.03 0.69 3.57 44.99 0.16 0.85 16 26 H 0.16 2.88 8.14 -2.39 -0.02 2.86 16 27 C -0.16 -3.32 7.11 30.59 0.22 -3.10 16 28 C -0.13 -2.51 4.90 -10.79 -0.05 -2.57 16 29 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 30 C -0.12 -1.17 9.90 71.98 0.71 -0.46 16 31 H 0.06 3.86 6.07 -2.39 -0.01 3.85 16 32 H 0.02 1.10 6.33 -2.39 -0.02 1.08 16 33 H 0.04 1.83 6.42 -2.39 -0.02 1.81 16 34 H 0.26 14.92 8.31 -92.71 -0.77 14.14 16 35 H 0.10 2.76 4.35 -2.39 -0.01 2.75 16 36 H 0.09 3.40 6.76 -2.39 -0.02 3.38 16 37 H 0.02 0.80 6.46 -2.39 -0.02 0.79 16 38 H 0.15 2.67 1.71 -2.91 0.00 2.67 16 39 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 40 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 41 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 42 H 0.11 3.34 7.96 -2.91 -0.02 3.31 16 43 H 0.10 2.90 6.34 -2.39 -0.02 2.89 16 44 H 0.15 2.05 8.05 -2.39 -0.02 2.03 16 45 H 0.08 0.59 6.54 -2.39 -0.02 0.57 16 46 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.08 0.55 7.90 -2.39 -0.02 0.53 16 Total: -1.00 -77.57 362.78 5.28 -72.30 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 1.00 Total: 19.76 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 7.10 Total: -7.80 kcal Atomic # 7 Polarization: -124.62 SS G_CDS: -4.85 Total: -129.47 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -77.57 5.28 -72.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493364687.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.326 kcal (2) G-P(sol) polarization free energy of solvation -77.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds