Wall clock time and date at job start Tue Mar 31 2020 15:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47095 * 2 1 4 4 N 1.30295 * 126.34636 * 270.15090 * 3 2 1 5 5 N 1.28536 * 110.05314 * 180.31435 * 4 3 2 6 6 C 1.31219 * 109.85852 * 359.72121 * 5 4 3 7 7 N 1.38579 * 126.47520 * 179.97438 * 6 5 4 8 8 C 1.46901 * 110.99565 * 307.30019 * 7 6 5 9 9 C 1.46896 * 110.99772 * 71.24804 * 7 6 5 10 10 H 1.09007 * 109.47280 * 55.00113 * 9 7 6 11 11 C 1.53008 * 109.47420 * 295.00324 * 9 7 6 12 12 C 1.50701 * 109.47077 * 175.00317 * 9 7 6 13 13 H 1.07999 * 120.00222 * 359.97438 * 12 9 7 14 14 C 1.37884 * 119.99905 * 179.97438 * 12 9 7 15 15 N 1.31514 * 119.99835 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99869 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.46806 * 90.00258 * 16 14 12 18 18 H 1.48495 * 109.47111 * 210.00147 * 16 14 12 19 19 H 1.48495 * 109.47146 * 330.00516 * 16 14 12 20 20 N 1.36454 * 107.05224 * 0.02562 * 6 5 4 21 21 C 1.46504 * 127.13495 * 179.97438 * 20 6 5 22 22 C 1.53004 * 109.47190 * 85.72645 * 21 20 6 23 23 S 1.81395 * 109.46990 * 180.02562 * 22 21 20 24 24 C 1.81408 * 102.99647 * 179.97438 * 23 22 21 25 25 C 1.53000 * 109.46860 * 174.99737 * 24 23 22 26 26 C 1.52997 * 109.47369 * 295.00005 * 24 23 22 27 27 H 1.09002 * 109.47335 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46775 * 299.99768 * 1 2 3 29 29 H 1.08997 * 109.47085 * 59.99625 * 1 2 3 30 30 H 1.09007 * 109.46927 * 239.99722 * 2 1 3 31 31 H 1.09001 * 109.47402 * 120.00000 * 2 1 3 32 32 H 1.08998 * 109.47768 * 62.08196 * 8 7 6 33 33 H 1.09005 * 109.46794 * 182.07817 * 8 7 6 34 34 H 1.09000 * 109.46961 * 302.07200 * 8 7 6 35 35 H 1.08996 * 109.46931 * 179.97438 * 11 9 7 36 36 H 1.08993 * 109.46779 * 300.00118 * 11 9 7 37 37 H 1.08999 * 109.46585 * 60.00028 * 11 9 7 38 38 H 0.96999 * 119.99576 * 179.97438 * 15 14 12 39 39 H 1.08997 * 109.47001 * 325.72971 * 21 20 6 40 40 H 1.09002 * 109.47220 * 205.72696 * 21 20 6 41 41 H 1.08998 * 109.47139 * 59.99768 * 22 21 20 42 42 H 1.09002 * 109.47080 * 300.00136 * 22 21 20 43 43 H 1.08999 * 109.46986 * 55.00243 * 24 23 22 44 44 H 1.08999 * 109.46907 * 60.00458 * 25 24 23 45 45 H 1.09000 * 109.47016 * 179.97438 * 25 24 23 46 46 H 1.09000 * 109.47712 * 300.00069 * 25 24 23 47 47 H 1.08996 * 109.46885 * 60.00074 * 26 24 23 48 48 H 1.09000 * 109.47299 * 180.02562 * 26 24 23 49 49 H 1.09000 * 109.46740 * 300.00102 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2871 2.1498 -1.0495 5 7 2.7055 3.3104 -0.6889 6 6 2.7346 3.3867 0.6208 7 7 3.1301 4.4808 1.3737 8 6 4.4590 4.9514 0.9606 9 6 2.1395 5.5624 1.2911 10 1 1.1610 5.1821 1.5845 11 6 2.0737 6.0852 -0.1454 12 6 2.5409 6.6828 2.2155 13 1 3.4415 6.5996 2.8057 14 6 1.7582 7.8143 2.3078 15 7 0.6613 7.9154 1.5895 16 14 2.2554 9.2028 3.4542 17 1 3.1207 10.1627 2.7228 18 1 1.0393 9.9033 3.9397 19 1 3.0013 8.6463 4.6113 20 7 2.3031 2.1847 1.1013 21 6 2.1643 1.7920 2.5059 22 6 0.7973 2.2392 3.0278 23 16 0.6258 1.7536 4.7671 24 6 -1.0284 2.3603 5.1989 25 6 -1.3800 1.9152 6.6199 26 6 -1.0469 3.8883 5.1238 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 4.4225 5.2761 -0.0793 33 1 4.7608 5.7873 1.5918 34 1 5.1797 4.1401 1.0629 35 1 1.3383 6.8874 -0.2067 36 1 3.0521 6.4654 -0.4388 37 1 1.7834 5.2747 -0.8140 38 1 0.1105 8.7112 1.6547 39 1 2.9504 2.2647 3.0947 40 1 2.2488 0.7085 2.5903 41 1 0.0112 1.7665 2.4390 42 1 0.7128 3.3226 2.9434 43 1 -1.7586 1.9533 4.4995 44 1 -0.6497 2.3222 7.3192 45 1 -2.3737 2.2801 6.8795 46 1 -1.3668 0.8266 6.6734 47 1 -0.7964 4.2054 4.1115 48 1 -2.0407 4.2529 5.3837 49 1 -0.3166 4.2953 5.8232 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001513781616.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:29 Heat of formation + Delta-G solvation = 76.235725 kcal Electronic energy + Delta-G solvation = -27287.866106 eV Core-core repulsion = 23798.792918 eV Total energy + Delta-G solvation = -3489.073188 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.54772 -37.28475 -35.59616 -34.81619 -33.77497 -32.71850 -30.53980 -29.14411 -28.25867 -27.32478 -25.45930 -25.23996 -24.14227 -23.86428 -21.84211 -21.44369 -20.17500 -19.38558 -17.02963 -16.41896 -16.27480 -15.91379 -15.39390 -15.06457 -15.02289 -14.63477 -14.34325 -14.27686 -13.96818 -13.62193 -13.47358 -13.18032 -12.81074 -12.43962 -12.31843 -12.24303 -11.92228 -11.80362 -11.63181 -11.46710 -11.39843 -11.28851 -11.25694 -11.10952 -11.01869 -10.95432 -10.78988 -10.57083 -10.21056 -10.15486 -9.94416 -9.87202 -9.75737 -8.93954 -8.51072 -8.44530 -7.70992 -7.69996 -6.10836 -4.16808 1.43276 2.17848 2.43309 2.81539 3.25175 3.30966 3.32479 3.36102 4.30988 4.46680 4.59743 4.64989 4.67546 4.71505 4.78557 4.86787 5.08520 5.13475 5.18626 5.21475 5.42163 5.45439 5.48489 5.57611 5.62117 5.69824 5.72391 5.77027 5.79207 5.85353 5.99539 6.01396 6.12548 6.24077 6.28724 6.37630 6.46005 6.59645 6.82384 7.00699 7.03734 7.12677 7.49566 7.61574 7.73136 7.88221 8.21831 8.43607 8.86595 9.24285 9.48203 10.95765 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008153 B = 0.005875 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3433.512500 B = 4764.416411 C = 7340.063335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.029 4.029 3 C 0.159 3.841 4 N -0.292 5.292 5 N -0.314 5.314 6 C 0.378 3.622 7 N -0.470 5.470 8 C 0.047 3.953 9 C 0.228 3.772 10 H 0.033 0.967 11 C -0.174 4.174 12 C -0.506 4.506 13 H 0.066 0.934 14 C 0.063 3.937 15 N -0.889 5.889 16 Si 0.898 3.102 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.272 1.272 20 N -0.469 5.469 21 C 0.138 3.862 22 C -0.105 4.105 23 S -0.245 6.245 24 C -0.055 4.055 25 C -0.132 4.132 26 C -0.152 4.152 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.088 0.912 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.033 0.967 37 H 0.032 0.968 38 H 0.262 0.738 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.062 0.938 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.619 -15.219 5.995 16.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.069 4.069 3 C -0.108 4.108 4 N -0.133 5.133 5 N -0.157 5.157 6 C 0.022 3.978 7 N -0.196 5.196 8 C -0.101 4.101 9 C 0.123 3.877 10 H 0.050 0.950 11 C -0.233 4.233 12 C -0.544 4.544 13 H 0.084 0.916 14 C -0.139 4.139 15 N -0.528 5.528 16 Si 0.726 3.274 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.197 1.197 20 N -0.163 5.163 21 C 0.013 3.987 22 C -0.254 4.254 23 S -0.019 6.019 24 C -0.184 4.184 25 C -0.190 4.190 26 C -0.210 4.210 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.127 0.873 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.122 0.878 43 H 0.103 0.897 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.868 -15.354 5.658 16.470 hybrid contribution -0.943 1.487 0.401 1.806 sum -2.811 -13.867 6.059 15.392 Atomic orbital electron populations 1.21778 0.93981 1.02122 1.02687 1.19883 0.96339 0.86734 1.03922 1.24627 1.05843 0.97454 0.82908 1.73948 1.15643 0.99384 1.24278 1.74766 1.20207 1.11890 1.08807 1.22949 0.98672 0.87790 0.88390 1.59431 1.05618 1.05639 1.48893 1.22221 0.87288 0.99913 1.00649 1.19359 0.88642 0.85744 0.93906 0.94953 1.22438 1.01561 1.01797 0.97501 1.20996 1.09604 1.00213 1.23604 0.91600 1.24891 0.94867 0.98245 0.95866 1.69909 1.14081 1.28662 1.40103 0.86492 0.77991 0.81968 0.80980 1.20608 1.21269 1.19720 1.46355 1.50422 1.12042 1.07508 1.21326 0.97390 1.01193 0.78765 1.23755 1.00090 1.06588 0.94948 1.86502 1.24660 1.77553 1.13168 1.23087 0.94703 0.99555 1.01080 1.21605 1.02010 1.01724 0.93654 1.22115 1.02662 0.92435 1.03816 0.91560 0.92870 0.91752 0.88587 0.90403 0.93910 0.89371 0.93819 0.89546 0.94817 0.94947 0.92834 0.87274 0.88714 0.90000 0.87849 0.89737 0.91545 0.91112 0.91858 0.91695 0.91863 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.89 37.16 0.37 -1.12 16 2 C -0.03 -0.32 6.30 -27.88 -0.18 -0.50 16 3 C 0.16 2.59 7.32 -154.02 -1.13 1.46 16 4 N -0.29 -5.87 12.18 32.99 0.40 -5.47 16 5 N -0.31 -6.95 9.88 30.31 0.30 -6.65 16 6 C 0.38 7.79 6.20 -318.87 -1.98 5.81 16 7 N -0.47 -10.09 4.77 -176.07 -0.84 -10.93 16 8 C 0.05 0.93 8.70 60.07 0.52 1.46 16 9 C 0.23 5.63 2.32 -68.86 -0.16 5.47 16 10 H 0.03 0.89 7.91 -51.93 -0.41 0.48 16 11 C -0.17 -4.40 8.19 37.16 0.30 -4.10 16 12 C -0.51 -13.13 7.91 -34.44 -0.27 -13.40 16 13 H 0.07 1.69 6.76 -52.49 -0.35 1.34 16 14 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 15 N -0.89 -24.58 11.32 55.43 0.63 -23.96 16 16 Si 0.90 20.57 29.54 -169.99 -5.02 15.54 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 20 N -0.47 -7.93 2.81 -114.08 -0.32 -8.25 16 21 C 0.14 1.89 6.07 -4.04 -0.02 1.86 16 22 C -0.10 -1.45 5.96 37.16 0.22 -1.23 16 23 S -0.24 -3.05 21.15 -107.50 -2.27 -5.32 16 24 C -0.06 -0.61 3.38 -26.73 -0.09 -0.70 16 25 C -0.13 -1.18 9.20 37.16 0.34 -0.84 16 26 C -0.15 -1.93 9.10 37.16 0.34 -1.59 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.57 6.74 -51.93 -0.35 0.22 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 0.69 7.19 -51.93 -0.37 0.32 16 32 H 0.04 0.89 6.30 -51.93 -0.33 0.57 16 33 H 0.09 1.76 6.47 -51.93 -0.34 1.42 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 36 H 0.03 0.83 6.43 -51.93 -0.33 0.49 16 37 H 0.03 0.81 5.97 -51.93 -0.31 0.50 16 38 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 40 H 0.09 1.03 7.12 -51.93 -0.37 0.66 16 41 H 0.08 1.07 6.74 -51.93 -0.35 0.72 16 42 H 0.10 1.80 6.94 -51.92 -0.36 1.44 16 43 H 0.08 0.89 8.14 -51.92 -0.42 0.46 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.99 6.92 -51.93 -0.36 0.63 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 394.24 15.07 5.94 5.94 Total: -1.00 -29.90 394.24 -11.35 -41.25 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -8.33 Total: 3.68 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -1.82 Total: -5.84 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.17 Total: -55.25 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.27 Total: -5.32 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.90 -11.35 -41.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001513781616.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.481 kcal (2) G-P(sol) polarization free energy of solvation -29.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds