Wall clock time and date at job start Tue Mar 31 2020 15:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47095 * 2 1 4 4 N 1.30295 * 126.34636 * 270.15090 * 3 2 1 5 5 N 1.28536 * 110.05314 * 180.31435 * 4 3 2 6 6 C 1.31219 * 109.85852 * 359.72121 * 5 4 3 7 7 N 1.38579 * 126.47520 * 179.97438 * 6 5 4 8 8 C 1.46901 * 110.99565 * 307.30019 * 7 6 5 9 9 C 1.46896 * 110.99772 * 71.24804 * 7 6 5 10 10 H 1.09007 * 109.47280 * 55.00113 * 9 7 6 11 11 C 1.53008 * 109.47420 * 295.00324 * 9 7 6 12 12 C 1.50701 * 109.47077 * 175.00317 * 9 7 6 13 13 H 1.07999 * 120.00222 * 359.97438 * 12 9 7 14 14 C 1.37884 * 119.99905 * 179.97438 * 12 9 7 15 15 N 1.31514 * 119.99835 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99869 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.46806 * 90.00258 * 16 14 12 18 18 H 1.48495 * 109.47111 * 210.00147 * 16 14 12 19 19 H 1.48495 * 109.47146 * 330.00516 * 16 14 12 20 20 N 1.36454 * 107.05224 * 0.02562 * 6 5 4 21 21 C 1.46504 * 127.13495 * 179.97438 * 20 6 5 22 22 C 1.53004 * 109.47190 * 85.72645 * 21 20 6 23 23 S 1.81395 * 109.46990 * 180.02562 * 22 21 20 24 24 C 1.81408 * 102.99647 * 179.97438 * 23 22 21 25 25 C 1.53000 * 109.46860 * 174.99737 * 24 23 22 26 26 C 1.52997 * 109.47369 * 295.00005 * 24 23 22 27 27 H 1.09002 * 109.47335 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46775 * 299.99768 * 1 2 3 29 29 H 1.08997 * 109.47085 * 59.99625 * 1 2 3 30 30 H 1.09007 * 109.46927 * 239.99722 * 2 1 3 31 31 H 1.09001 * 109.47402 * 120.00000 * 2 1 3 32 32 H 1.08998 * 109.47768 * 62.08196 * 8 7 6 33 33 H 1.09005 * 109.46794 * 182.07817 * 8 7 6 34 34 H 1.09000 * 109.46961 * 302.07200 * 8 7 6 35 35 H 1.08996 * 109.46931 * 179.97438 * 11 9 7 36 36 H 1.08993 * 109.46779 * 300.00118 * 11 9 7 37 37 H 1.08999 * 109.46585 * 60.00028 * 11 9 7 38 38 H 0.96999 * 119.99576 * 179.97438 * 15 14 12 39 39 H 1.08997 * 109.47001 * 325.72971 * 21 20 6 40 40 H 1.09002 * 109.47220 * 205.72696 * 21 20 6 41 41 H 1.08998 * 109.47139 * 59.99768 * 22 21 20 42 42 H 1.09002 * 109.47080 * 300.00136 * 22 21 20 43 43 H 1.08999 * 109.46986 * 55.00243 * 24 23 22 44 44 H 1.08999 * 109.46907 * 60.00458 * 25 24 23 45 45 H 1.09000 * 109.47016 * 179.97438 * 25 24 23 46 46 H 1.09000 * 109.47712 * 300.00069 * 25 24 23 47 47 H 1.08996 * 109.46885 * 60.00074 * 26 24 23 48 48 H 1.09000 * 109.47299 * 180.02562 * 26 24 23 49 49 H 1.09000 * 109.46740 * 300.00102 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2871 2.1498 -1.0495 5 7 2.7055 3.3104 -0.6889 6 6 2.7346 3.3867 0.6208 7 7 3.1301 4.4808 1.3737 8 6 4.4590 4.9514 0.9606 9 6 2.1395 5.5624 1.2911 10 1 1.1610 5.1821 1.5845 11 6 2.0737 6.0852 -0.1454 12 6 2.5409 6.6828 2.2155 13 1 3.4415 6.5996 2.8057 14 6 1.7582 7.8143 2.3078 15 7 0.6613 7.9154 1.5895 16 14 2.2554 9.2028 3.4542 17 1 3.1207 10.1627 2.7228 18 1 1.0393 9.9033 3.9397 19 1 3.0013 8.6463 4.6113 20 7 2.3031 2.1847 1.1013 21 6 2.1643 1.7920 2.5059 22 6 0.7973 2.2392 3.0278 23 16 0.6258 1.7536 4.7671 24 6 -1.0284 2.3603 5.1989 25 6 -1.3800 1.9152 6.6199 26 6 -1.0469 3.8883 5.1238 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 4.4225 5.2761 -0.0793 33 1 4.7608 5.7873 1.5918 34 1 5.1797 4.1401 1.0629 35 1 1.3383 6.8874 -0.2067 36 1 3.0521 6.4654 -0.4388 37 1 1.7834 5.2747 -0.8140 38 1 0.1105 8.7112 1.6547 39 1 2.9504 2.2647 3.0947 40 1 2.2488 0.7085 2.5903 41 1 0.0112 1.7665 2.4390 42 1 0.7128 3.3226 2.9434 43 1 -1.7586 1.9533 4.4995 44 1 -0.6497 2.3222 7.3192 45 1 -2.3737 2.2801 6.8795 46 1 -1.3668 0.8266 6.6734 47 1 -0.7964 4.2054 4.1115 48 1 -2.0407 4.2529 5.3837 49 1 -0.3166 4.2953 5.8232 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001513781616.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:28 Heat of formation + Delta-G solvation = 62.168445 kcal Electronic energy + Delta-G solvation = -27288.476109 eV Core-core repulsion = 23798.792918 eV Total energy + Delta-G solvation = -3489.683191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.00608 -39.05401 -36.89356 -35.71481 -35.12818 -34.38562 -31.84280 -30.94219 -29.81232 -28.22003 -27.31210 -27.08838 -25.39933 -24.92285 -23.27401 -22.69397 -21.47091 -20.99725 -18.53996 -18.05827 -17.67050 -17.31062 -16.87883 -16.53389 -16.21157 -15.95817 -15.57598 -15.41148 -15.25113 -14.96718 -14.76978 -14.42011 -14.28298 -13.89945 -13.42898 -13.36279 -13.23142 -13.11454 -13.06765 -12.94350 -12.74594 -12.72652 -12.53614 -12.47561 -12.31406 -12.26781 -12.15653 -12.08388 -12.04588 -12.00130 -11.47868 -11.20579 -10.95217 -10.87050 -10.54723 -10.00058 -9.45540 -8.71411 -8.15794 -6.28726 0.35917 0.79185 1.37630 1.43105 1.44114 1.52444 1.55708 1.81366 2.40553 3.04239 3.15017 3.37265 3.47958 3.57620 3.78956 3.88282 3.91489 4.02800 4.12458 4.26790 4.28638 4.31675 4.40068 4.55515 4.59705 4.64832 4.65665 4.67860 4.72649 4.79515 4.85418 4.91288 4.96307 4.96522 4.99617 5.06564 5.08072 5.16549 5.20364 5.23967 5.30198 5.40436 5.59893 5.63416 5.81866 5.98802 6.17969 6.61368 6.80341 7.40221 7.75136 8.90934 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008153 B = 0.005875 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3433.512500 B = 4764.416411 C = 7340.063335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.029 4.029 3 C 0.184 3.816 4 N -0.333 5.333 5 N -0.347 5.347 6 C 0.355 3.645 7 N -0.465 5.465 8 C 0.052 3.948 9 C 0.243 3.757 10 H -0.003 1.003 11 C -0.155 4.155 12 C -0.514 4.514 13 H 0.069 0.931 14 C 0.017 3.983 15 N -0.920 5.920 16 Si 0.962 3.038 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.263 1.263 20 N -0.465 5.465 21 C 0.137 3.863 22 C -0.097 4.097 23 S -0.237 6.237 24 C -0.054 4.054 25 C -0.127 4.127 26 C -0.149 4.149 27 H 0.101 0.899 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.027 0.973 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.033 0.967 37 H 0.025 0.975 38 H 0.262 0.738 39 H 0.100 0.900 40 H 0.136 0.864 41 H 0.089 0.911 42 H 0.058 0.942 43 H 0.094 0.906 44 H 0.061 0.939 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.030 0.970 48 H 0.079 0.921 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.612 -17.582 7.892 19.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 C -0.085 4.085 4 N -0.173 5.173 5 N -0.189 5.189 6 C -0.003 4.003 7 N -0.191 5.191 8 C -0.096 4.096 9 C 0.137 3.863 10 H 0.015 0.985 11 C -0.215 4.215 12 C -0.553 4.553 13 H 0.087 0.913 14 C -0.182 4.182 15 N -0.559 5.559 16 Si 0.788 3.212 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.188 1.188 20 N -0.159 5.159 21 C 0.014 3.986 22 C -0.246 4.246 23 S -0.010 6.010 24 C -0.183 4.183 25 C -0.185 4.185 26 C -0.208 4.208 27 H 0.119 0.881 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.046 0.954 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.118 0.882 40 H 0.153 0.847 41 H 0.108 0.892 42 H 0.077 0.923 43 H 0.113 0.887 44 H 0.080 0.920 45 H 0.107 0.893 46 H 0.093 0.907 47 H 0.049 0.951 48 H 0.098 0.902 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.845 -17.741 7.562 19.373 hybrid contribution -1.010 2.113 -0.197 2.351 sum -2.854 -15.628 7.365 17.510 Atomic orbital electron populations 1.21763 0.93062 1.03982 1.01349 1.20263 0.96893 0.83353 1.06382 1.25708 1.02372 0.98734 0.81654 1.73870 1.17932 0.99447 1.26019 1.74625 1.21107 1.13357 1.09847 1.22857 1.00420 0.88646 0.88354 1.59298 1.05333 1.05087 1.49369 1.22208 0.87089 1.00741 0.99536 1.18972 0.88008 0.86426 0.92929 0.98505 1.22232 1.00512 1.00567 0.98165 1.21222 1.09646 1.00664 1.23731 0.91293 1.25685 0.94724 1.00581 0.97207 1.70048 1.15095 1.29285 1.41450 0.85482 0.77639 0.78906 0.79215 1.20177 1.21135 1.18758 1.46519 1.49456 1.10908 1.08978 1.21588 0.96857 1.03384 0.76774 1.23569 1.00570 1.03750 0.96746 1.86420 1.26065 1.76963 1.11590 1.23199 0.94052 0.98053 1.02956 1.21605 1.02788 1.02486 0.91621 1.22065 1.03237 0.94116 1.01349 0.88057 0.93533 0.93820 0.87020 0.86998 0.95395 0.89517 0.91438 0.92044 0.94839 0.95570 0.92883 0.88159 0.84651 0.89222 0.92274 0.88748 0.91970 0.89342 0.90660 0.95123 0.90247 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.89 71.98 0.71 -1.79 16 2 C -0.03 -0.55 6.30 29.85 0.19 -0.37 16 3 C 0.18 5.77 7.32 137.64 1.01 6.78 16 4 N -0.33 -13.51 12.18 -49.54 -0.60 -14.11 16 5 N -0.35 -15.79 9.88 -58.00 -0.57 -16.37 16 6 C 0.35 14.96 6.20 260.11 1.61 16.57 16 7 N -0.47 -20.60 4.77 -710.97 -3.39 -23.99 16 8 C 0.05 2.09 8.70 127.69 1.11 3.20 16 9 C 0.24 12.55 2.32 44.17 0.10 12.65 16 10 H 0.00 -0.17 7.91 -2.38 -0.02 -0.19 16 11 C -0.16 -8.28 8.19 71.98 0.59 -7.69 16 12 C -0.51 -27.40 7.91 25.60 0.20 -27.20 16 13 H 0.07 3.57 6.76 -2.91 -0.02 3.55 16 14 C 0.02 0.93 5.30 84.66 0.45 1.38 16 15 N -0.92 -52.56 11.32 21.45 0.24 -52.31 16 16 Si 0.96 42.54 29.54 68.60 2.03 44.56 16 17 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 20 N -0.46 -15.53 2.81 -514.84 -1.45 -16.98 16 21 C 0.14 3.58 6.07 86.38 0.52 4.10 16 22 C -0.10 -2.68 5.96 71.98 0.43 -2.25 16 23 S -0.24 -5.56 21.15 -56.49 -1.19 -6.76 16 24 C -0.05 -1.12 3.38 30.59 0.10 -1.02 16 25 C -0.13 -1.95 9.20 71.98 0.66 -1.29 16 26 C -0.15 -3.82 9.10 71.98 0.66 -3.17 16 27 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.05 0.88 6.74 -2.38 -0.02 0.86 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.11 1.41 7.19 -2.39 -0.02 1.39 16 32 H 0.03 1.19 6.30 -2.39 -0.02 1.18 16 33 H 0.09 3.48 6.47 -2.38 -0.02 3.47 16 34 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.06 3.56 6.07 -2.39 -0.01 3.55 16 36 H 0.03 1.72 6.43 -2.39 -0.02 1.70 16 37 H 0.03 1.38 5.97 -2.39 -0.01 1.37 16 38 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 39 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 40 H 0.14 2.43 7.12 -2.39 -0.02 2.42 16 41 H 0.09 2.28 6.74 -2.39 -0.02 2.27 16 42 H 0.06 2.18 6.94 -2.39 -0.02 2.17 16 43 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.03 0.98 6.92 -2.39 -0.02 0.96 16 48 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 49 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -68.43 394.24 4.33 -64.10 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.92 Total: 21.93 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 8.35 Total: -0.08 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -5.77 Total: -123.76 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: -5.56 SS G_CDS: -1.19 Total: -6.76 kcal Total: -68.43 4.33 -64.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001513781616.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.270 kcal (2) G-P(sol) polarization free energy of solvation -68.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds