Wall clock time and date at job start Tue Mar 31 2020 14:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99982 * 2 1 4 4 H 1.48497 * 109.47230 * 239.99503 * 3 2 1 5 5 H 1.48510 * 109.47168 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47610 * 119.99612 * 3 2 1 7 7 C 1.37877 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99585 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00186 * 0.02562 * 7 2 1 10 10 O 1.42896 * 109.47061 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99835 * 180.02562 * 10 9 7 12 12 C 1.53009 * 109.46987 * 180.02562 * 11 10 9 13 13 O 1.42902 * 109.47112 * 64.99699 * 12 11 10 14 14 C 1.42903 * 113.99696 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.46697 * 180.02562 * 14 13 12 16 16 O 1.45199 * 109.47013 * 65.00100 * 15 14 13 17 17 C 1.34230 * 116.99539 * 179.97438 * 16 15 14 18 18 O 1.20828 * 120.00699 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99811 * 180.02562 * 17 16 15 20 20 C 1.53002 * 109.47207 * 180.02562 * 19 17 16 21 21 C 1.52997 * 109.47206 * 179.97438 * 20 19 17 22 22 C 1.53006 * 109.47127 * 0.02562 * 21 20 19 23 23 C 1.52999 * 109.46626 * 299.99539 * 22 21 20 24 24 C 1.52997 * 109.46991 * 60.00378 * 23 22 21 25 25 C 1.52997 * 109.47164 * 59.99836 * 22 21 20 26 26 C 1.52999 * 109.47232 * 60.00000 * 19 17 16 27 27 H 0.97000 * 120.00204 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47066 * 59.99804 * 9 7 2 29 29 H 1.08995 * 109.46970 * 299.99779 * 9 7 2 30 30 H 1.08995 * 109.47500 * 60.00073 * 11 10 9 31 31 H 1.09000 * 109.47004 * 299.99728 * 11 10 9 32 32 H 1.08995 * 109.46851 * 304.99661 * 12 11 10 33 33 H 1.08996 * 109.46650 * 184.99655 * 12 11 10 34 34 H 1.08996 * 109.47129 * 59.99759 * 14 13 12 35 35 H 1.09001 * 109.46904 * 300.00054 * 14 13 12 36 36 H 1.08995 * 109.47146 * 304.99744 * 15 14 13 37 37 H 1.09003 * 109.46643 * 184.99757 * 15 14 13 38 38 H 1.08998 * 109.47006 * 60.00037 * 20 19 17 39 39 H 1.08999 * 109.47160 * 299.99704 * 20 19 17 40 40 H 1.09001 * 109.47502 * 240.00500 * 21 20 19 41 41 H 1.09001 * 109.47289 * 120.00297 * 21 20 19 42 42 H 1.09000 * 109.47050 * 179.97438 * 22 21 20 43 43 H 1.09002 * 109.46719 * 180.02562 * 23 22 21 44 44 H 1.08993 * 109.47839 * 299.99931 * 23 22 21 45 45 H 1.09006 * 109.47073 * 239.99153 * 24 23 22 46 46 H 1.09008 * 109.47182 * 119.99786 * 24 23 22 47 47 H 1.09001 * 109.47375 * 59.99966 * 25 22 21 48 48 H 1.09002 * 109.46777 * 180.02562 * 25 22 21 49 49 H 1.08997 * 109.47345 * 300.00425 * 26 19 17 50 50 H 1.08999 * 109.47218 * 60.00245 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6482 -5.9562 0.0006 13 8 3.3867 -5.8897 1.2222 14 6 4.4283 -6.8626 1.3254 15 6 5.1475 -6.6995 2.6659 16 8 4.2287 -7.0041 3.7482 17 6 4.7072 -6.9085 4.9987 18 8 5.8555 -6.5807 5.1829 19 6 3.8122 -7.2100 6.1730 20 6 4.5974 -7.0262 7.4732 21 6 3.6886 -7.3316 8.6655 22 6 2.2975 -7.7198 8.1601 23 6 1.7072 -6.5623 7.3523 24 6 2.6161 -6.2568 6.1600 25 6 2.4058 -8.9598 7.2704 26 6 3.3140 -8.6534 6.0773 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 0.9453 -4.9822 -0.8902 31 1 0.9447 -4.9827 0.8897 32 1 3.3222 -5.7955 -0.8407 33 1 2.1822 -6.9374 -0.0893 34 1 5.1393 -6.7213 0.5115 35 1 3.9989 -7.8626 1.2631 36 1 5.5000 -5.6731 2.7665 37 1 5.9970 -7.3813 2.7077 38 1 4.9519 -5.9977 7.5412 39 1 5.4497 -7.7056 7.4822 40 1 3.6117 -6.4484 9.2996 41 1 4.1089 -8.1565 9.2409 42 1 1.6502 -7.9379 9.0095 43 1 0.7160 -6.8386 6.9927 44 1 1.6301 -5.6789 7.9861 45 1 2.9706 -5.2282 6.2276 46 1 2.0567 -6.3881 5.2337 47 1 2.8264 -9.7844 7.8460 48 1 1.4148 -9.2360 6.9101 49 1 2.7545 -8.7840 5.1510 50 1 4.1660 -9.3332 6.0859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519831162.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:34 Heat of formation + Delta-G solvation = -207.352717 kcal Electronic energy + Delta-G solvation = -28420.992161 eV Core-core repulsion = 24412.283282 eV Total energy + Delta-G solvation = -4008.708879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.48838 -39.60932 -38.02677 -36.65177 -36.09688 -32.74082 -32.35802 -31.21858 -31.15931 -30.84274 -28.83652 -26.73423 -24.31216 -23.02602 -22.94709 -22.46185 -22.37949 -21.89769 -20.83670 -18.09521 -17.21299 -16.99958 -16.80577 -16.40298 -16.26302 -16.09275 -15.81427 -15.60692 -14.97135 -14.87005 -14.36670 -14.11627 -13.92603 -13.29885 -13.25584 -12.95757 -12.72014 -12.43956 -12.41320 -12.37281 -12.33114 -12.28370 -12.19253 -12.04739 -11.68849 -11.59805 -11.13365 -10.91226 -10.81902 -10.75719 -10.73415 -10.71577 -10.46494 -10.16162 -10.13959 -10.08498 -9.98282 -9.47783 -9.07993 -8.79851 -8.14033 -6.07894 -4.09211 2.13391 2.56041 3.34805 3.36927 3.41430 3.73437 4.12819 4.20142 4.27623 4.37321 4.73999 4.77899 4.81488 4.88612 4.90925 4.93815 5.00742 5.04353 5.04750 5.08202 5.12646 5.13970 5.20725 5.28459 5.31869 5.37685 5.43835 5.57148 5.62911 5.67771 5.70130 5.80109 5.88144 5.94785 5.97306 6.01806 6.02136 6.02578 6.03733 6.05713 6.10371 6.23980 6.39485 7.12267 7.34595 7.46412 7.69973 7.82698 8.18564 8.61334 9.03977 9.55352 11.03740 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012042 B = 0.002586 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.725126 B =10823.234050 C =11726.387236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.389 6.389 11 C 0.064 3.936 12 C 0.068 3.932 13 O -0.367 6.367 14 C 0.062 3.938 15 C 0.069 3.931 16 O -0.342 6.342 17 C 0.470 3.530 18 O -0.511 6.511 19 C -0.042 4.042 20 C -0.098 4.098 21 C -0.112 4.112 22 C -0.091 4.091 23 C -0.111 4.111 24 C -0.110 4.110 25 C -0.110 4.110 26 C -0.106 4.106 27 H 0.264 0.736 28 H 0.004 0.996 29 H 0.006 0.994 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.078 0.922 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.473 -22.093 14.089 26.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.309 6.309 11 C -0.014 4.014 12 C -0.008 4.008 13 O -0.286 6.286 14 C -0.015 4.015 15 C -0.005 4.005 16 O -0.258 6.258 17 C 0.313 3.687 18 O -0.399 6.399 19 C -0.043 4.043 20 C -0.136 4.136 21 C -0.149 4.149 22 C -0.109 4.109 23 C -0.149 4.149 24 C -0.148 4.148 25 C -0.148 4.148 26 C -0.144 4.144 27 H 0.074 0.926 28 H 0.022 0.978 29 H 0.023 0.977 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.100 0.900 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.096 0.904 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.826 -21.692 14.239 26.594 hybrid contribution 0.323 0.757 -0.412 0.921 sum 6.149 -20.934 13.827 25.831 Atomic orbital electron populations 1.69952 1.06089 1.27224 1.50636 1.24943 0.94983 0.99401 0.95176 0.86396 0.79316 0.81901 0.78863 1.20036 1.21152 1.19979 1.21027 0.94050 0.89390 1.50735 0.91617 1.20195 0.88775 0.83638 0.95321 1.87910 1.35188 1.12659 1.95162 1.22251 0.93697 0.85629 0.99838 1.22589 0.94078 0.97340 0.86806 1.88105 1.47117 1.54859 1.38537 1.22489 0.91277 0.93032 0.94684 1.23131 0.91009 1.02734 0.83601 1.86549 1.44398 1.79748 1.15116 1.23695 0.87283 0.73350 0.84361 1.90647 1.19524 1.43546 1.86207 1.20439 0.95084 0.98337 0.90440 1.21446 0.97429 1.03118 0.91612 1.21566 0.94799 1.01561 0.96984 1.21096 0.96644 0.95205 0.97964 1.21540 0.98679 0.98231 0.96410 1.21582 0.94649 0.98351 1.00172 1.21541 0.99831 0.97404 0.95991 1.21570 0.99888 0.92992 0.99964 0.92628 0.97796 0.97652 0.92971 0.93620 0.92721 0.92720 0.91073 0.92562 0.89946 0.89968 0.90934 0.91174 0.91479 0.91661 0.90740 0.91297 0.91457 0.91136 0.90001 0.91668 0.91357 0.90360 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.91 22.31 29.54 -169.99 -5.02 17.29 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -15.58 9.43 -34.44 -0.32 -15.91 16 8 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 9 C 0.19 5.52 5.69 36.00 0.20 5.72 16 10 O -0.39 -9.84 10.29 -40.08 -0.41 -10.25 16 11 C 0.06 1.22 6.32 37.16 0.23 1.45 16 12 C 0.07 1.05 6.32 37.16 0.23 1.29 16 13 O -0.37 -6.21 10.28 -48.79 -0.50 -6.71 16 14 C 0.06 0.75 6.33 37.16 0.24 0.99 16 15 C 0.07 0.87 5.84 37.16 0.22 1.09 16 16 O -0.34 -4.70 9.99 -42.02 -0.42 -5.12 16 17 C 0.47 6.31 6.55 36.01 0.24 6.54 16 18 O -0.51 -8.01 15.73 -18.75 -0.29 -8.30 16 19 C -0.04 -0.44 0.71 -155.68 -0.11 -0.55 16 20 C -0.10 -0.94 4.28 -26.73 -0.11 -1.06 16 21 C -0.11 -0.82 5.71 -26.73 -0.15 -0.97 16 22 C -0.09 -0.64 3.19 -90.62 -0.29 -0.93 16 23 C -0.11 -0.92 5.71 -26.73 -0.15 -1.08 16 24 C -0.11 -1.16 4.92 -26.76 -0.13 -1.29 16 25 C -0.11 -0.76 5.71 -26.71 -0.15 -0.91 16 26 C -0.11 -0.90 4.92 -26.71 -0.13 -1.04 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 1.17 8.13 -51.93 -0.42 0.75 16 37 H 0.08 0.85 8.13 -51.93 -0.42 0.43 16 38 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 39 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.08 0.94 8.11 -51.92 -0.42 0.52 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.08 0.69 8.11 -51.93 -0.42 0.26 16 50 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 400.76 15.07 6.04 6.04 Total: -1.00 -34.69 400.76 -9.43 -44.12 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -9.26 Total: -5.34 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -0.29 Total: -5.09 kcal Atomic # 7 Polarization: -27.36 SS G_CDS: 0.74 Total: -26.62 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -1.63 Total: -30.39 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.69 -9.43 -44.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519831162.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.237 kcal (2) G-P(sol) polarization free energy of solvation -34.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds