Wall clock time and date at job start Tue Mar 31 2020 14:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99982 * 2 1 4 4 H 1.48497 * 109.47230 * 239.99503 * 3 2 1 5 5 H 1.48510 * 109.47168 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47610 * 119.99612 * 3 2 1 7 7 C 1.37877 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99585 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00186 * 0.02562 * 7 2 1 10 10 O 1.42896 * 109.47061 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99835 * 180.02562 * 10 9 7 12 12 C 1.53009 * 109.46987 * 180.02562 * 11 10 9 13 13 O 1.42902 * 109.47112 * 64.99699 * 12 11 10 14 14 C 1.42903 * 113.99696 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.46697 * 180.02562 * 14 13 12 16 16 O 1.45199 * 109.47013 * 65.00100 * 15 14 13 17 17 C 1.34230 * 116.99539 * 179.97438 * 16 15 14 18 18 O 1.20828 * 120.00699 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99811 * 180.02562 * 17 16 15 20 20 C 1.53002 * 109.47207 * 180.02562 * 19 17 16 21 21 C 1.52997 * 109.47206 * 179.97438 * 20 19 17 22 22 C 1.53006 * 109.47127 * 0.02562 * 21 20 19 23 23 C 1.52999 * 109.46626 * 299.99539 * 22 21 20 24 24 C 1.52997 * 109.46991 * 60.00378 * 23 22 21 25 25 C 1.52997 * 109.47164 * 59.99836 * 22 21 20 26 26 C 1.52999 * 109.47232 * 60.00000 * 19 17 16 27 27 H 0.97000 * 120.00204 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47066 * 59.99804 * 9 7 2 29 29 H 1.08995 * 109.46970 * 299.99779 * 9 7 2 30 30 H 1.08995 * 109.47500 * 60.00073 * 11 10 9 31 31 H 1.09000 * 109.47004 * 299.99728 * 11 10 9 32 32 H 1.08995 * 109.46851 * 304.99661 * 12 11 10 33 33 H 1.08996 * 109.46650 * 184.99655 * 12 11 10 34 34 H 1.08996 * 109.47129 * 59.99759 * 14 13 12 35 35 H 1.09001 * 109.46904 * 300.00054 * 14 13 12 36 36 H 1.08995 * 109.47146 * 304.99744 * 15 14 13 37 37 H 1.09003 * 109.46643 * 184.99757 * 15 14 13 38 38 H 1.08998 * 109.47006 * 60.00037 * 20 19 17 39 39 H 1.08999 * 109.47160 * 299.99704 * 20 19 17 40 40 H 1.09001 * 109.47502 * 240.00500 * 21 20 19 41 41 H 1.09001 * 109.47289 * 120.00297 * 21 20 19 42 42 H 1.09000 * 109.47050 * 179.97438 * 22 21 20 43 43 H 1.09002 * 109.46719 * 180.02562 * 23 22 21 44 44 H 1.08993 * 109.47839 * 299.99931 * 23 22 21 45 45 H 1.09006 * 109.47073 * 239.99153 * 24 23 22 46 46 H 1.09008 * 109.47182 * 119.99786 * 24 23 22 47 47 H 1.09001 * 109.47375 * 59.99966 * 25 22 21 48 48 H 1.09002 * 109.46777 * 180.02562 * 25 22 21 49 49 H 1.08997 * 109.47345 * 300.00425 * 26 19 17 50 50 H 1.08999 * 109.47218 * 60.00245 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6482 -5.9562 0.0006 13 8 3.3867 -5.8897 1.2222 14 6 4.4283 -6.8626 1.3254 15 6 5.1475 -6.6995 2.6659 16 8 4.2287 -7.0041 3.7482 17 6 4.7072 -6.9085 4.9987 18 8 5.8555 -6.5807 5.1829 19 6 3.8122 -7.2100 6.1730 20 6 4.5974 -7.0262 7.4732 21 6 3.6886 -7.3316 8.6655 22 6 2.2975 -7.7198 8.1601 23 6 1.7072 -6.5623 7.3523 24 6 2.6161 -6.2568 6.1600 25 6 2.4058 -8.9598 7.2704 26 6 3.3140 -8.6534 6.0773 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 0.9453 -4.9822 -0.8902 31 1 0.9447 -4.9827 0.8897 32 1 3.3222 -5.7955 -0.8407 33 1 2.1822 -6.9374 -0.0893 34 1 5.1393 -6.7213 0.5115 35 1 3.9989 -7.8626 1.2631 36 1 5.5000 -5.6731 2.7665 37 1 5.9970 -7.3813 2.7077 38 1 4.9519 -5.9977 7.5412 39 1 5.4497 -7.7056 7.4822 40 1 3.6117 -6.4484 9.2996 41 1 4.1089 -8.1565 9.2409 42 1 1.6502 -7.9379 9.0095 43 1 0.7160 -6.8386 6.9927 44 1 1.6301 -5.6789 7.9861 45 1 2.9706 -5.2282 6.2276 46 1 2.0567 -6.3881 5.2337 47 1 2.8264 -9.7844 7.8460 48 1 1.4148 -9.2360 6.9101 49 1 2.7545 -8.7840 5.1510 50 1 4.1660 -9.3332 6.0859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519831162.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:33 Heat of formation + Delta-G solvation = -227.597818 kcal Electronic energy + Delta-G solvation = -28421.870055 eV Core-core repulsion = 24412.283282 eV Total energy + Delta-G solvation = -4009.586773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.37685 -40.51331 -39.33942 -38.21774 -37.43312 -34.96242 -33.17287 -32.11572 -31.88309 -31.79935 -30.32126 -28.77384 -25.23171 -24.56681 -23.70116 -23.67033 -23.40029 -23.36727 -21.73954 -19.03193 -18.68460 -18.30406 -18.04109 -17.65138 -17.50677 -17.27828 -16.70509 -16.54858 -16.53079 -16.10461 -16.01179 -15.83148 -15.13261 -14.57329 -14.34649 -13.98105 -13.80313 -13.66921 -13.39250 -13.17036 -13.11343 -13.10511 -13.05331 -13.01868 -12.98844 -12.92591 -12.76041 -12.69919 -12.42920 -12.23591 -11.91186 -11.78692 -11.66001 -11.39447 -11.33215 -10.94462 -10.90301 -10.83697 -10.79836 -10.58057 -10.26108 -8.34393 -6.46990 1.06704 1.37449 1.42591 1.50986 1.59844 2.32857 2.63512 2.98958 3.17978 3.34399 3.48053 3.49252 3.83560 3.95312 4.03877 4.09004 4.16697 4.21679 4.24832 4.27901 4.31723 4.33559 4.37672 4.38642 4.40974 4.42537 4.47976 4.57204 4.60764 4.66979 4.69219 4.75481 4.87706 5.02501 5.06839 5.08737 5.15307 5.22296 5.24682 5.26591 5.29636 5.35934 5.42792 5.43911 5.44541 5.51892 5.93553 6.24101 6.51670 6.63316 6.79749 7.24833 8.77873 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012042 B = 0.002586 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.725126 B =10823.234050 C =11726.387236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.983 3.017 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.552 4.552 8 H 0.058 0.942 9 C 0.209 3.791 10 O -0.409 6.409 11 C 0.049 3.951 12 C 0.075 3.925 13 O -0.408 6.408 14 C 0.061 3.939 15 C 0.063 3.937 16 O -0.350 6.350 17 C 0.465 3.535 18 O -0.541 6.541 19 C -0.042 4.042 20 C -0.098 4.098 21 C -0.108 4.108 22 C -0.088 4.088 23 C -0.109 4.109 24 C -0.111 4.111 25 C -0.107 4.107 26 C -0.104 4.104 27 H 0.272 0.728 28 H -0.009 1.009 29 H -0.018 1.018 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.107 0.893 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.049 0.951 46 H 0.067 0.933 47 H 0.082 0.918 48 H 0.076 0.924 49 H 0.073 0.927 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.580 -23.385 14.667 28.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.590 4.590 8 H 0.077 0.923 9 C 0.134 3.866 10 O -0.329 6.329 11 C -0.028 4.028 12 C -0.001 4.001 13 O -0.328 6.328 14 C -0.014 4.014 15 C -0.010 4.010 16 O -0.266 6.266 17 C 0.310 3.690 18 O -0.431 6.431 19 C -0.043 4.043 20 C -0.135 4.135 21 C -0.145 4.145 22 C -0.106 4.106 23 C -0.147 4.147 24 C -0.148 4.148 25 C -0.144 4.144 26 C -0.141 4.141 27 H 0.081 0.919 28 H 0.009 0.991 29 H 0.000 1.000 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.125 0.875 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.085 0.915 47 H 0.101 0.899 48 H 0.095 0.905 49 H 0.092 0.908 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.924 -23.016 14.809 28.003 hybrid contribution 0.282 1.098 -0.623 1.293 sum 6.206 -21.918 14.186 26.836 Atomic orbital electron populations 1.70052 1.07686 1.28795 1.50278 1.25960 0.96017 1.03344 0.93806 0.85246 0.78161 0.76731 0.79346 1.18824 1.19596 1.19339 1.21362 0.94010 0.91040 1.52591 0.92342 1.19819 0.88594 0.84677 0.93482 1.87859 1.35423 1.14370 1.95219 1.22682 0.95658 0.83932 1.00480 1.22600 0.93365 0.97547 0.86621 1.88045 1.48601 1.56920 1.39265 1.22723 0.90782 0.93256 0.94683 1.23281 0.91887 1.01930 0.83908 1.86559 1.44915 1.79574 1.15549 1.24418 0.87349 0.72377 0.84886 1.90620 1.20907 1.44992 1.86538 1.20575 0.94477 0.99734 0.89477 1.21452 0.97905 1.01897 0.92277 1.21578 0.94551 1.02451 0.95927 1.21123 0.96552 0.94533 0.98403 1.21558 0.98419 0.99184 0.95520 1.21569 0.95090 0.97333 1.00849 1.21563 0.99898 0.97739 0.95214 1.21591 1.00413 0.91280 1.00863 0.91916 0.99082 0.99995 0.91067 0.94192 0.91932 0.88378 0.88923 0.89842 0.92515 0.87521 0.92917 0.91374 0.91125 0.89900 0.88612 0.90600 0.91248 0.93235 0.91461 0.89946 0.90506 0.90818 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.98 45.66 29.54 68.60 2.03 47.69 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.55 -34.35 9.43 25.60 0.24 -34.11 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 9 C 0.21 12.30 5.69 71.24 0.41 12.71 16 10 O -0.41 -21.24 10.29 -144.35 -1.49 -22.73 16 11 C 0.05 1.89 6.32 71.99 0.45 2.35 16 12 C 0.07 2.18 6.32 71.99 0.45 2.64 16 13 O -0.41 -13.65 10.28 -136.01 -1.40 -15.05 16 14 C 0.06 1.41 6.33 71.98 0.46 1.87 16 15 C 0.06 1.61 5.84 71.98 0.42 2.03 16 16 O -0.35 -9.84 9.99 -48.77 -0.49 -10.33 16 17 C 0.47 12.97 6.55 71.24 0.47 13.44 16 18 O -0.54 -17.71 15.73 21.96 0.35 -17.37 16 19 C -0.04 -0.88 0.71 -52.94 -0.04 -0.92 16 20 C -0.10 -1.87 4.28 30.59 0.13 -1.74 16 21 C -0.11 -1.40 5.71 30.60 0.17 -1.23 16 22 C -0.09 -1.04 3.19 -10.79 -0.03 -1.08 16 23 C -0.11 -1.73 5.71 30.59 0.17 -1.55 16 24 C -0.11 -2.44 4.92 30.58 0.15 -2.29 16 25 C -0.11 -1.19 5.71 30.61 0.17 -1.02 16 26 C -0.10 -1.65 4.92 30.61 0.15 -1.50 16 27 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 28 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 29 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 30 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.71 8.13 -2.39 -0.02 1.69 16 37 H 0.11 2.14 8.13 -2.39 -0.02 2.12 16 38 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 39 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 46 H 0.07 1.64 8.11 -2.38 -0.02 1.62 16 47 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.07 1.23 8.11 -2.39 -0.02 1.21 16 50 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -77.28 400.76 4.41 -72.86 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.88 Total: 11.16 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 4.25 Total: -9.50 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 0.28 Total: -56.74 kcal Atomic # 8 Polarization: -62.44 SS G_CDS: -3.03 Total: -65.47 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -77.28 4.41 -72.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519831162.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.736 kcal (2) G-P(sol) polarization free energy of solvation -77.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds