Wall clock time and date at job start Tue Mar 31 2020 14:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99556 * 2 1 4 4 N 1.46501 * 109.46943 * 128.13580 * 3 2 1 5 5 C 1.37553 * 127.16829 * 269.60157 * 4 3 2 6 6 C 1.47858 * 126.47077 * 0.03591 * 5 4 3 7 7 C 1.39569 * 120.14335 * 197.30272 * 6 5 4 8 8 C 1.37959 * 119.84844 * 179.76438 * 7 6 5 9 9 C 1.38354 * 120.14927 * 0.51609 * 8 7 6 10 10 C 1.50699 * 119.85766 * 179.76002 * 9 8 7 11 11 C 1.38354 * 120.28767 * 359.73776 * 9 8 7 12 12 C 1.37965 * 120.14603 * 0.02562 * 11 9 8 13 13 N 1.31261 * 107.06090 * 180.26070 * 5 4 3 14 14 N 1.28515 * 109.93045 * 359.77587 * 13 5 4 15 15 C 1.31379 * 110.08182 * 359.97438 * 14 13 5 16 16 N 1.38404 * 126.37043 * 179.97438 * 15 14 13 17 17 C 1.46902 * 111.00031 * 123.97851 * 16 15 14 18 18 C 1.46897 * 111.00109 * 0.02570 * 16 15 14 19 19 H 1.08996 * 109.47049 * 310.00151 * 18 16 15 20 20 C 1.53000 * 109.47003 * 69.99924 * 18 16 15 21 21 C 1.50701 * 109.47496 * 189.99956 * 18 16 15 22 22 H 1.08007 * 119.99211 * 0.02562 * 21 18 16 23 23 C 1.37871 * 120.00451 * 180.02562 * 21 18 16 24 24 N 1.31517 * 119.99653 * 0.02562 * 23 21 18 25 25 Si 1.86800 * 120.00215 * 180.02562 * 23 21 18 26 26 H 1.48500 * 109.47033 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.46991 * 119.99902 * 25 23 21 28 28 H 1.48506 * 109.47060 * 239.99866 * 25 23 21 29 29 H 1.08001 * 119.99578 * 176.66116 * 1 2 3 30 30 H 1.07996 * 120.00564 * 356.66045 * 1 2 3 31 31 H 1.07996 * 120.00116 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47393 * 8.13674 * 3 2 1 33 33 H 1.08997 * 109.47266 * 248.13742 * 3 2 1 34 34 H 1.07994 * 120.06975 * 0.02562 * 7 6 5 35 35 H 1.08007 * 119.92429 * 180.25090 * 8 7 6 36 36 H 1.08991 * 109.47375 * 269.97868 * 10 9 8 37 37 H 1.09003 * 109.46914 * 29.97659 * 10 9 8 38 38 H 1.08995 * 109.47044 * 149.97369 * 10 9 8 39 39 H 1.08003 * 119.93033 * 179.97438 * 11 9 8 40 40 H 1.07996 * 120.07085 * 180.02562 * 12 11 9 41 41 H 1.09005 * 109.46986 * 60.00063 * 17 16 15 42 42 H 1.08997 * 109.47431 * 179.97438 * 17 16 15 43 43 H 1.08998 * 109.47154 * 300.00098 * 17 16 15 44 44 H 1.09003 * 109.47391 * 180.02562 * 20 18 16 45 45 H 1.08998 * 109.47276 * 299.99768 * 20 18 16 46 46 H 1.09005 * 109.47130 * 60.00229 * 20 18 16 47 47 H 0.97001 * 119.99603 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0463 1.3016 1.0864 5 6 2.8594 1.7376 2.3776 6 6 1.6162 2.3049 2.9424 7 6 1.6551 3.0303 4.1341 8 6 0.4922 3.5610 4.6531 9 6 -0.7122 3.3664 4.0007 10 6 -1.9793 3.9445 4.5763 11 6 -0.7584 2.6438 2.8217 12 6 0.3980 2.1118 2.2894 13 7 3.9944 1.5596 3.0123 14 7 4.8642 1.0449 2.2184 15 6 4.3372 0.8626 1.0289 16 7 4.9746 0.3306 -0.0785 17 6 4.2404 -0.8292 -0.6019 18 6 6.3652 -0.0243 0.2345 19 1 6.8554 0.8200 0.7190 20 6 6.3843 -1.2324 1.1733 21 6 7.0954 -0.3660 -1.0387 22 1 6.5780 -0.3233 -1.9859 23 6 8.4236 -0.7331 -0.9946 24 7 9.0533 -0.7855 0.1588 25 14 9.3287 -1.1559 -2.5730 26 1 8.4026 -1.0211 -3.7260 27 1 10.4765 -0.2302 -2.7486 28 1 9.8264 -2.5531 -2.4992 29 1 -0.5399 -0.9338 -0.0545 30 1 -0.5401 0.9336 0.0545 31 1 1.8500 -0.9353 -0.0004 32 1 1.3640 2.1284 0.1455 33 1 2.5765 1.4285 -0.9537 34 1 2.5940 3.1794 4.6464 35 1 0.5215 4.1261 5.5731 36 1 -2.4357 3.2200 5.2506 37 1 -1.7455 4.8559 5.1266 38 1 -2.6730 4.1759 3.7681 39 1 -1.7018 2.4951 2.3174 40 1 0.3606 1.5483 1.3689 41 1 3.2351 -0.5225 -0.8910 42 1 4.7626 -1.2275 -1.4717 43 1 4.1783 -1.5977 0.1685 44 1 7.4162 -1.4955 1.4059 45 1 5.8564 -0.9852 2.0943 46 1 5.8941 -2.0768 0.6887 47 1 9.9879 -1.0434 0.1898 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520304977.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:01 Heat of formation + Delta-G solvation = 156.145357 kcal Electronic energy + Delta-G solvation = -28001.736265 eV Core-core repulsion = 24380.684267 eV Total energy + Delta-G solvation = -3621.051998 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.51149 -39.35041 -37.43820 -36.47113 -33.46883 -32.98538 -32.46589 -31.07459 -29.65481 -28.71268 -27.35979 -26.55792 -25.32065 -24.99125 -23.09460 -22.36159 -21.53691 -20.63804 -20.35127 -19.20855 -17.39184 -16.58523 -16.19111 -15.93158 -15.53694 -15.50392 -15.04914 -14.80316 -14.49754 -14.10968 -13.99629 -13.70842 -13.61833 -13.44182 -13.16170 -12.68429 -12.49564 -12.45651 -12.19636 -11.94117 -11.53195 -11.41844 -11.34687 -11.12710 -10.94707 -10.93601 -10.76328 -10.65405 -10.25908 -10.10367 -9.91169 -9.83858 -9.78702 -9.48366 -9.08405 -8.95871 -8.52637 -8.38901 -7.26671 -6.05301 -4.12485 0.84609 1.27204 1.71026 2.36197 2.70534 3.27188 3.29916 3.35152 3.38085 3.79694 4.29442 4.34285 4.46173 4.52838 4.60672 4.62469 4.70913 4.85253 4.93150 5.05996 5.22545 5.24966 5.26586 5.33359 5.43488 5.51988 5.55386 5.60296 5.66328 5.83124 5.88745 5.94498 6.01868 6.12842 6.17576 6.26719 6.29610 6.41703 6.43926 6.51902 6.76296 6.80106 6.93016 7.01386 7.12677 7.42884 7.58823 7.72643 7.95524 8.23487 8.40262 8.89360 9.29383 9.52179 11.01238 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.024232 B = 0.003047 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.208478 B = 9185.717429 C =10005.718006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.180 4.180 3 C 0.129 3.871 4 N -0.483 5.483 5 C 0.179 3.821 6 C 0.003 3.997 7 C -0.079 4.079 8 C -0.117 4.117 9 C -0.087 4.087 10 C -0.114 4.114 11 C -0.118 4.118 12 C -0.133 4.133 13 N -0.264 5.264 14 N -0.313 5.313 15 C 0.395 3.605 16 N -0.448 5.448 17 C 0.019 3.981 18 C 0.227 3.773 19 H 0.058 0.942 20 C -0.169 4.169 21 C -0.513 4.513 22 H 0.064 0.936 23 C 0.063 3.937 24 N -0.884 5.884 25 Si 0.900 3.100 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.284 1.284 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.126 0.874 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.136 0.864 35 H 0.126 0.874 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.123 0.877 40 H 0.139 0.861 41 H 0.060 0.940 42 H 0.094 0.906 43 H 0.036 0.964 44 H 0.093 0.907 45 H 0.029 0.971 46 H 0.024 0.976 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.296 5.472 3.031 24.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.199 4.199 3 C 0.007 3.993 4 N -0.180 5.180 5 C -0.084 4.084 6 C 0.000 4.000 7 C -0.099 4.099 8 C -0.135 4.135 9 C -0.088 4.088 10 C -0.171 4.171 11 C -0.136 4.136 12 C -0.152 4.152 13 N -0.105 5.105 14 N -0.159 5.159 15 C 0.040 3.960 16 N -0.171 5.171 17 C -0.128 4.128 18 C 0.123 3.877 19 H 0.076 0.924 20 C -0.228 4.228 21 C -0.552 4.552 22 H 0.082 0.918 23 C -0.139 4.139 24 N -0.522 5.522 25 Si 0.728 3.272 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.210 1.210 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.144 0.856 32 H 0.119 0.881 33 H 0.130 0.870 34 H 0.154 0.846 35 H 0.144 0.856 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.141 0.859 40 H 0.157 0.843 41 H 0.078 0.922 42 H 0.113 0.887 43 H 0.055 0.945 44 H 0.111 0.889 45 H 0.048 0.952 46 H 0.043 0.957 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.972 5.760 3.783 23.028 hybrid contribution -0.256 -0.853 -1.460 1.710 sum -22.228 4.907 2.323 22.882 Atomic orbital electron populations 1.23982 0.95448 1.02617 0.98805 1.23465 0.96441 0.98841 1.01138 1.21153 0.90860 0.96808 0.90526 1.46174 1.11192 1.49981 1.10626 1.22388 0.96784 1.07158 0.82078 1.17465 0.88358 0.98582 0.95570 1.21220 0.99182 0.95277 0.94205 1.20971 0.91687 1.00734 1.00139 1.20019 0.95405 0.98049 0.95292 1.20797 0.94578 1.00685 1.00996 1.20852 0.97788 0.98810 0.96158 1.21903 0.91726 1.00396 1.01184 1.74274 0.96828 1.14199 1.25171 1.74905 1.22923 1.20674 0.97393 1.23327 0.81313 0.98667 0.92649 1.59222 1.06303 1.30040 1.21516 1.22747 0.97578 0.91149 1.01277 1.19432 0.77589 0.95076 0.95632 0.92430 1.22365 1.04220 0.98458 0.97741 1.21037 0.95342 1.46437 0.92341 0.91779 1.24899 0.97291 0.95370 0.96390 1.69929 1.10773 1.47531 1.23950 0.86416 0.79724 0.77916 0.83170 1.19760 1.20933 1.21045 0.87262 0.87809 0.85590 0.88130 0.86979 0.84615 0.85561 0.91145 0.91493 0.91603 0.85874 0.84338 0.92189 0.88694 0.94549 0.88873 0.95204 0.95692 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 12.96 29.01 0.38 -0.98 16 2 C -0.18 -1.92 8.21 -36.03 -0.30 -2.21 16 3 C 0.13 1.61 4.92 -5.19 -0.03 1.58 16 4 N -0.48 -8.31 2.81 -115.97 -0.33 -8.64 16 5 C 0.18 3.21 7.71 -153.78 -1.19 2.03 16 6 C 0.00 0.04 5.87 -104.97 -0.62 -0.57 16 7 C -0.08 -1.02 9.70 -39.19 -0.38 -1.40 16 8 C -0.12 -1.20 9.68 -39.64 -0.38 -1.59 16 9 C -0.09 -0.80 5.89 -104.54 -0.62 -1.42 16 10 C -0.11 -0.71 10.01 36.01 0.36 -0.35 16 11 C -0.12 -1.11 9.68 -39.64 -0.38 -1.50 16 12 C -0.13 -1.52 8.70 -39.19 -0.34 -1.86 16 13 N -0.26 -5.66 11.99 32.59 0.39 -5.26 16 14 N -0.31 -7.40 9.60 30.31 0.29 -7.11 16 15 C 0.40 8.38 6.75 -318.90 -2.15 6.23 16 16 N -0.45 -9.75 4.76 -176.09 -0.84 -10.58 16 17 C 0.02 0.35 7.85 60.07 0.47 0.82 16 18 C 0.23 5.82 2.00 -68.87 -0.14 5.68 16 19 H 0.06 1.70 7.75 -51.93 -0.40 1.30 16 20 C -0.17 -4.27 8.17 37.16 0.30 -3.97 16 21 C -0.51 -13.72 7.91 -34.44 -0.27 -13.99 16 22 H 0.06 1.67 7.12 -52.48 -0.37 1.30 16 23 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 24 N -0.88 -25.23 11.32 55.43 0.63 -24.60 16 25 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 29 H 0.11 0.73 8.06 -52.49 -0.42 0.31 16 30 H 0.10 0.66 6.69 -52.49 -0.35 0.31 16 31 H 0.13 1.48 6.18 -52.49 -0.32 1.16 16 32 H 0.10 1.04 5.77 -51.93 -0.30 0.74 16 33 H 0.11 1.38 7.62 -51.93 -0.40 0.99 16 34 H 0.14 1.81 7.96 -52.49 -0.42 1.39 16 35 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 38 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 39 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 40 H 0.14 1.41 1.34 -52.49 -0.07 1.34 16 41 H 0.06 0.87 3.48 -51.93 -0.18 0.69 16 42 H 0.09 1.77 6.76 -51.93 -0.35 1.42 16 43 H 0.04 0.67 6.46 -51.93 -0.34 0.34 16 44 H 0.09 2.59 6.07 -51.93 -0.32 2.27 16 45 H 0.03 0.74 6.33 -51.93 -0.33 0.41 16 46 H 0.02 0.58 6.42 -51.93 -0.33 0.25 16 47 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 365.38 15.07 5.51 5.51 Total: -1.00 -32.16 365.38 -10.89 -43.04 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.14 Total: 3.64 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -5.37 Total: -11.88 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.15 Total: -56.20 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.16 -10.89 -43.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520304977.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.188 kcal (2) G-P(sol) polarization free energy of solvation -32.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds