Wall clock time and date at job start Tue Mar 31 2020 14:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99556 * 2 1 4 4 N 1.46501 * 109.46943 * 128.13580 * 3 2 1 5 5 C 1.37553 * 127.16829 * 269.60157 * 4 3 2 6 6 C 1.47858 * 126.47077 * 0.03591 * 5 4 3 7 7 C 1.39569 * 120.14335 * 197.30272 * 6 5 4 8 8 C 1.37959 * 119.84844 * 179.76438 * 7 6 5 9 9 C 1.38354 * 120.14927 * 0.51609 * 8 7 6 10 10 C 1.50699 * 119.85766 * 179.76002 * 9 8 7 11 11 C 1.38354 * 120.28767 * 359.73776 * 9 8 7 12 12 C 1.37965 * 120.14603 * 0.02562 * 11 9 8 13 13 N 1.31261 * 107.06090 * 180.26070 * 5 4 3 14 14 N 1.28515 * 109.93045 * 359.77587 * 13 5 4 15 15 C 1.31379 * 110.08182 * 359.97438 * 14 13 5 16 16 N 1.38404 * 126.37043 * 179.97438 * 15 14 13 17 17 C 1.46902 * 111.00031 * 123.97851 * 16 15 14 18 18 C 1.46897 * 111.00109 * 0.02570 * 16 15 14 19 19 H 1.08996 * 109.47049 * 310.00151 * 18 16 15 20 20 C 1.53000 * 109.47003 * 69.99924 * 18 16 15 21 21 C 1.50701 * 109.47496 * 189.99956 * 18 16 15 22 22 H 1.08007 * 119.99211 * 0.02562 * 21 18 16 23 23 C 1.37871 * 120.00451 * 180.02562 * 21 18 16 24 24 N 1.31517 * 119.99653 * 0.02562 * 23 21 18 25 25 Si 1.86800 * 120.00215 * 180.02562 * 23 21 18 26 26 H 1.48500 * 109.47033 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.46991 * 119.99902 * 25 23 21 28 28 H 1.48506 * 109.47060 * 239.99866 * 25 23 21 29 29 H 1.08001 * 119.99578 * 176.66116 * 1 2 3 30 30 H 1.07996 * 120.00564 * 356.66045 * 1 2 3 31 31 H 1.07996 * 120.00116 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47393 * 8.13674 * 3 2 1 33 33 H 1.08997 * 109.47266 * 248.13742 * 3 2 1 34 34 H 1.07994 * 120.06975 * 0.02562 * 7 6 5 35 35 H 1.08007 * 119.92429 * 180.25090 * 8 7 6 36 36 H 1.08991 * 109.47375 * 269.97868 * 10 9 8 37 37 H 1.09003 * 109.46914 * 29.97659 * 10 9 8 38 38 H 1.08995 * 109.47044 * 149.97369 * 10 9 8 39 39 H 1.08003 * 119.93033 * 179.97438 * 11 9 8 40 40 H 1.07996 * 120.07085 * 180.02562 * 12 11 9 41 41 H 1.09005 * 109.46986 * 60.00063 * 17 16 15 42 42 H 1.08997 * 109.47431 * 179.97438 * 17 16 15 43 43 H 1.08998 * 109.47154 * 300.00098 * 17 16 15 44 44 H 1.09003 * 109.47391 * 180.02562 * 20 18 16 45 45 H 1.08998 * 109.47276 * 299.99768 * 20 18 16 46 46 H 1.09005 * 109.47130 * 60.00229 * 20 18 16 47 47 H 0.97001 * 119.99603 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0463 1.3016 1.0864 5 6 2.8594 1.7376 2.3776 6 6 1.6162 2.3049 2.9424 7 6 1.6551 3.0303 4.1341 8 6 0.4922 3.5610 4.6531 9 6 -0.7122 3.3664 4.0007 10 6 -1.9793 3.9445 4.5763 11 6 -0.7584 2.6438 2.8217 12 6 0.3980 2.1118 2.2894 13 7 3.9944 1.5596 3.0123 14 7 4.8642 1.0449 2.2184 15 6 4.3372 0.8626 1.0289 16 7 4.9746 0.3306 -0.0785 17 6 4.2404 -0.8292 -0.6019 18 6 6.3652 -0.0243 0.2345 19 1 6.8554 0.8200 0.7190 20 6 6.3843 -1.2324 1.1733 21 6 7.0954 -0.3660 -1.0387 22 1 6.5780 -0.3233 -1.9859 23 6 8.4236 -0.7331 -0.9946 24 7 9.0533 -0.7855 0.1588 25 14 9.3287 -1.1559 -2.5730 26 1 8.4026 -1.0211 -3.7260 27 1 10.4765 -0.2302 -2.7486 28 1 9.8264 -2.5531 -2.4992 29 1 -0.5399 -0.9338 -0.0545 30 1 -0.5401 0.9336 0.0545 31 1 1.8500 -0.9353 -0.0004 32 1 1.3640 2.1284 0.1455 33 1 2.5765 1.4285 -0.9537 34 1 2.5940 3.1794 4.6464 35 1 0.5215 4.1261 5.5731 36 1 -2.4357 3.2200 5.2506 37 1 -1.7455 4.8559 5.1266 38 1 -2.6730 4.1759 3.7681 39 1 -1.7018 2.4951 2.3174 40 1 0.3606 1.5483 1.3689 41 1 3.2351 -0.5225 -0.8910 42 1 4.7626 -1.2275 -1.4717 43 1 4.1783 -1.5977 0.1685 44 1 7.4162 -1.4955 1.4059 45 1 5.8564 -0.9852 2.0943 46 1 5.8941 -2.0768 0.6887 47 1 9.9879 -1.0434 0.1898 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520304977.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:00 Heat of formation + Delta-G solvation = 139.512952 kcal Electronic energy + Delta-G solvation = -28002.457501 eV Core-core repulsion = 24380.684267 eV Total energy + Delta-G solvation = -3621.773233 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.97352 -40.24047 -39.13786 -37.55684 -34.98072 -34.20060 -33.76140 -31.92711 -31.14368 -30.45152 -28.44734 -27.53175 -27.33455 -26.53418 -24.16532 -23.38731 -23.06486 -21.72588 -21.50655 -20.60395 -18.69511 -18.21002 -17.48918 -17.41540 -16.97908 -16.69452 -16.38704 -15.90680 -15.72396 -15.43977 -15.11042 -14.70551 -14.61547 -14.50349 -14.40278 -14.35091 -13.51492 -13.44208 -13.17029 -13.04462 -12.97051 -12.87658 -12.84060 -12.67123 -12.46409 -12.34026 -12.21899 -12.15407 -11.97461 -11.81261 -11.43867 -11.19898 -10.96943 -10.91260 -10.58996 -10.53291 -9.92690 -9.71746 -8.80387 -8.13934 -6.29245 -0.16012 0.43383 0.84526 1.04642 1.43439 1.44154 1.51173 1.57836 1.87285 2.40753 2.82898 2.94004 3.15678 3.24502 3.51580 3.68984 3.79817 3.96342 4.01699 4.05676 4.13009 4.14666 4.38247 4.42899 4.45748 4.48462 4.60552 4.67190 4.78327 4.85561 4.86487 4.91567 4.93419 4.94116 5.00730 5.04232 5.14210 5.23628 5.32694 5.42593 5.46451 5.52014 5.52928 5.57364 5.61391 5.65424 5.81928 5.99750 6.04297 6.16805 6.51476 6.80054 7.39615 7.77046 8.93256 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.024232 B = 0.003047 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.208478 B = 9185.717429 C =10005.718006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.215 4.215 3 C 0.121 3.879 4 N -0.474 5.474 5 C 0.206 3.794 6 C -0.037 4.037 7 C -0.093 4.093 8 C -0.120 4.120 9 C -0.075 4.075 10 C -0.114 4.114 11 C -0.114 4.114 12 C -0.126 4.126 13 N -0.316 5.316 14 N -0.365 5.365 15 C 0.376 3.624 16 N -0.452 5.452 17 C 0.023 3.977 18 C 0.239 3.761 19 H 0.006 0.994 20 C -0.149 4.149 21 C -0.522 4.522 22 H 0.071 0.929 23 C 0.011 3.989 24 N -0.920 5.920 25 Si 0.972 3.028 26 H -0.259 1.259 27 H -0.284 1.284 28 H -0.279 1.279 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.111 0.889 32 H 0.126 0.874 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.148 0.852 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.162 0.838 40 H 0.151 0.849 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.026 0.974 44 H 0.065 0.935 45 H 0.021 0.979 46 H 0.036 0.964 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.274 5.944 1.556 28.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.234 4.234 3 C 0.001 3.999 4 N -0.169 5.169 5 C -0.060 4.060 6 C -0.040 4.040 7 C -0.113 4.113 8 C -0.138 4.138 9 C -0.075 4.075 10 C -0.170 4.170 11 C -0.132 4.132 12 C -0.145 4.145 13 N -0.155 5.155 14 N -0.210 5.210 15 C 0.019 3.981 16 N -0.174 5.174 17 C -0.123 4.123 18 C 0.133 3.867 19 H 0.024 0.976 20 C -0.209 4.209 21 C -0.561 4.561 22 H 0.089 0.911 23 C -0.188 4.188 24 N -0.559 5.559 25 Si 0.796 3.204 26 H -0.183 1.183 27 H -0.210 1.210 28 H -0.205 1.205 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.129 0.871 32 H 0.144 0.856 33 H 0.128 0.872 34 H 0.135 0.865 35 H 0.166 0.834 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.180 0.820 40 H 0.168 0.832 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.045 0.955 44 H 0.084 0.916 45 H 0.040 0.960 46 H 0.055 0.945 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -26.996 6.238 2.301 27.803 hybrid contribution 0.969 -0.873 -0.858 1.561 sum -26.027 5.365 1.443 26.613 Atomic orbital electron populations 1.24326 0.94246 1.04661 0.93791 1.23200 0.97403 0.97071 1.05687 1.21559 0.90400 0.99067 0.88862 1.46390 1.10405 1.48708 1.11423 1.23155 0.96977 1.03971 0.81893 1.17622 0.87949 1.01287 0.97160 1.21238 0.99774 0.96144 0.94172 1.21235 0.91176 1.00455 1.00956 1.20496 0.96091 0.96272 0.94676 1.20894 0.93125 1.01169 1.01855 1.21298 0.98377 0.97474 0.96036 1.22064 0.91083 1.00069 1.01252 1.74160 0.98276 1.17043 1.26000 1.74729 1.25008 1.22206 0.99018 1.23158 0.83045 0.99807 0.92109 1.59123 1.04985 1.31378 1.21935 1.22838 0.99152 0.89900 1.00390 1.18979 0.79895 0.92848 0.94934 0.97619 1.22128 1.02273 0.98888 0.97588 1.21311 0.95826 1.46183 0.92758 0.91066 1.25813 0.98170 0.95147 0.99699 1.70094 1.11040 1.48392 1.26328 0.85302 0.78249 0.77542 0.79272 1.18295 1.21020 1.20499 0.85324 0.85385 0.87145 0.85641 0.87171 0.86539 0.83450 0.89937 0.90607 0.89770 0.82016 0.83168 0.88283 0.89156 0.95514 0.91624 0.95990 0.94496 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 12.96 67.78 0.88 -0.63 16 2 C -0.21 -4.06 8.21 25.64 0.21 -3.85 16 3 C 0.12 2.85 4.92 85.63 0.42 3.27 16 4 N -0.47 -16.68 2.81 -520.81 -1.46 -18.15 16 5 C 0.21 7.65 7.71 136.22 1.05 8.70 16 6 C -0.04 -1.06 5.87 -20.09 -0.12 -1.17 16 7 C -0.09 -2.42 9.70 22.52 0.22 -2.21 16 8 C -0.12 -2.21 9.68 22.23 0.22 -1.99 16 9 C -0.07 -1.06 5.89 -19.81 -0.12 -1.18 16 10 C -0.11 -0.84 10.01 71.24 0.71 -0.13 16 11 C -0.11 -1.59 9.68 22.23 0.22 -1.38 16 12 C -0.13 -2.47 8.70 22.52 0.20 -2.28 16 13 N -0.32 -14.58 11.99 -50.80 -0.61 -15.19 16 14 N -0.36 -18.70 9.60 -58.02 -0.56 -19.26 16 15 C 0.38 16.89 6.75 260.12 1.76 18.64 16 16 N -0.45 -20.60 4.76 -711.03 -3.38 -23.98 16 17 C 0.02 0.86 7.85 127.69 1.00 1.86 16 18 C 0.24 13.07 2.00 44.17 0.09 13.16 16 19 H 0.01 0.37 7.75 -2.39 -0.02 0.36 16 20 C -0.15 -8.08 8.17 71.98 0.59 -7.49 16 21 C -0.52 -28.86 7.91 25.60 0.20 -28.66 16 22 H 0.07 3.75 7.12 -2.91 -0.02 3.73 16 23 C 0.01 0.61 5.30 84.65 0.45 1.06 16 24 N -0.92 -54.90 11.32 21.45 0.24 -54.66 16 25 Si 0.97 43.54 29.54 68.60 2.03 45.57 16 26 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 27 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 28 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 29 H 0.13 1.05 8.06 -2.91 -0.02 1.02 16 30 H 0.13 0.85 6.69 -2.91 -0.02 0.83 16 31 H 0.11 2.45 6.18 -2.91 -0.02 2.44 16 32 H 0.13 2.25 5.77 -2.39 -0.01 2.23 16 33 H 0.11 2.60 7.62 -2.39 -0.02 2.58 16 34 H 0.12 3.38 7.96 -2.91 -0.02 3.35 16 35 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.08 0.48 8.08 -2.39 -0.02 0.46 16 38 H 0.08 0.38 8.08 -2.39 -0.02 0.36 16 39 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 40 H 0.15 2.46 1.34 -2.91 0.00 2.46 16 41 H 0.10 2.83 3.48 -2.38 -0.01 2.82 16 42 H 0.09 3.38 6.76 -2.39 -0.02 3.36 16 43 H 0.03 1.01 6.46 -2.39 -0.02 1.00 16 44 H 0.06 3.89 6.07 -2.39 -0.01 3.88 16 45 H 0.02 1.17 6.33 -2.39 -0.02 1.16 16 46 H 0.04 1.83 6.42 -2.38 -0.02 1.81 16 47 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -77.50 365.38 5.23 -72.28 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 1.00 Total: 17.67 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 7.97 Total: -4.27 kcal Atomic # 7 Polarization: -125.47 SS G_CDS: -5.77 Total: -131.24 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -77.50 5.23 -72.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520304977.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.788 kcal (2) G-P(sol) polarization free energy of solvation -77.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds