Wall clock time and date at job start Tue Mar 31 2020 14:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50693 * 120.00153 * 2 1 4 4 N 1.46501 * 109.47124 * 126.34320 * 3 2 1 5 5 C 1.37552 * 127.16833 * 264.27065 * 4 3 2 6 6 C 1.47854 * 126.46903 * 0.03019 * 5 4 3 7 7 C 1.39568 * 120.14175 * 19.02763 * 6 5 4 8 8 C 1.37969 * 119.85170 * 179.78878 * 7 6 5 9 9 C 1.38355 * 120.14289 * 0.49084 * 8 7 6 10 10 C 1.50700 * 119.85421 * 179.76212 * 9 8 7 11 11 C 1.38360 * 120.29367 * 359.74285 * 9 8 7 12 12 C 1.37958 * 120.14068 * 0.02562 * 11 9 8 13 13 N 1.31254 * 107.05978 * 179.77109 * 5 4 3 14 14 N 1.28512 * 109.93617 * 0.22219 * 13 5 4 15 15 C 1.31373 * 110.07650 * 0.02562 * 14 13 5 16 16 N 1.38416 * 126.37109 * 179.97438 * 15 14 13 17 17 C 1.46896 * 110.99923 * 249.35575 * 16 15 14 18 18 C 1.46900 * 110.99721 * 13.30908 * 16 15 14 19 19 H 1.08995 * 109.47250 * 55.00018 * 18 16 15 20 20 C 1.53005 * 109.46981 * 294.99771 * 18 16 15 21 21 C 1.50703 * 109.46901 * 175.00338 * 18 16 15 22 22 H 1.07992 * 120.00115 * 359.97438 * 21 18 16 23 23 C 1.37878 * 119.99551 * 180.02562 * 21 18 16 24 24 N 1.31511 * 120.00608 * 359.97438 * 23 21 18 25 25 Si 1.86801 * 119.99545 * 179.97438 * 23 21 18 26 26 H 1.48497 * 109.47374 * 90.00174 * 25 23 21 27 27 H 1.48505 * 109.46801 * 209.99801 * 25 23 21 28 28 H 1.48503 * 109.47196 * 329.99786 * 25 23 21 29 29 H 1.07996 * 120.00118 * 183.67655 * 1 2 3 30 30 H 1.07997 * 119.99749 * 3.66642 * 1 2 3 31 31 H 1.07997 * 119.99786 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47159 * 6.34328 * 3 2 1 33 33 H 1.09006 * 109.47362 * 246.34483 * 3 2 1 34 34 H 1.08000 * 120.07473 * 0.02562 * 7 6 5 35 35 H 1.07998 * 119.92338 * 180.20687 * 8 7 6 36 36 H 1.08994 * 109.47108 * 269.97661 * 10 9 8 37 37 H 1.09001 * 109.46571 * 29.98189 * 10 9 8 38 38 H 1.08996 * 109.47027 * 149.97679 * 10 9 8 39 39 H 1.07992 * 119.93167 * 180.02562 * 11 9 8 40 40 H 1.08004 * 120.07464 * 180.02562 * 12 11 9 41 41 H 1.09002 * 109.47184 * 64.47121 * 17 16 15 42 42 H 1.08999 * 109.47056 * 184.47423 * 17 16 15 43 43 H 1.09000 * 109.46867 * 304.47008 * 17 16 15 44 44 H 1.08999 * 109.46864 * 60.00160 * 20 18 16 45 45 H 1.08996 * 109.47115 * 179.97438 * 20 18 16 46 46 H 1.08995 * 109.47330 * 300.00198 * 20 18 16 47 47 H 0.96994 * 120.00280 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0166 1.3186 1.1126 5 6 2.8293 1.8658 2.3606 6 6 1.6160 2.5595 2.8430 7 6 0.3972 2.3771 2.1879 8 6 -0.7322 3.0239 2.6458 9 6 -0.6562 3.8599 3.7456 10 6 -1.8928 4.5674 4.2369 11 6 0.5499 4.0489 4.3966 12 6 1.6857 3.4043 3.9518 13 7 3.9289 1.6508 3.0442 14 7 4.7804 1.0197 2.3175 15 6 4.2763 0.7939 1.1255 16 7 4.9041 0.1406 0.0791 17 6 5.2264 1.0752 -1.0074 18 6 6.1076 -0.5620 0.5435 19 1 5.8437 -1.2338 1.3603 20 6 7.1364 0.4585 1.0346 21 6 6.6940 -1.3592 -0.5931 22 1 6.2198 -1.3455 -1.5632 23 6 7.8353 -2.1067 -0.3940 24 7 8.4125 -2.1237 0.7875 25 14 8.5617 -3.0953 -1.8027 26 1 9.5387 -2.2575 -2.5434 27 1 9.2487 -4.2959 -1.2622 28 1 7.4752 -3.5187 -2.7222 29 1 -0.5400 -0.9333 0.0600 30 1 -0.5399 0.9334 -0.0598 31 1 1.8500 -0.9353 -0.0004 32 1 1.3607 2.1304 0.1135 33 1 2.6023 1.4135 -0.9414 34 1 0.3374 1.7280 1.3268 35 1 -1.6766 2.8810 2.1417 36 1 -1.9819 5.5322 3.7377 37 1 -2.7708 3.9608 4.0149 38 1 -1.8200 4.7207 5.3136 39 1 0.6025 4.7024 5.2547 40 1 2.6265 3.5522 4.4610 41 1 5.9529 1.8069 -0.6537 42 1 5.6463 0.5236 -1.8485 43 1 4.3193 1.5886 -1.3261 44 1 6.7123 1.0351 1.8567 45 1 8.0292 -0.0628 1.3797 46 1 7.4003 1.1303 0.2179 47 1 9.2156 -2.6493 0.9274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520304978.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:04 Heat of formation + Delta-G solvation = 153.783752 kcal Electronic energy + Delta-G solvation = -27918.560584 eV Core-core repulsion = 24297.406179 eV Total energy + Delta-G solvation = -3621.154405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.50977 -39.36181 -37.33064 -36.33980 -33.47673 -32.97526 -32.40232 -31.09346 -29.62343 -28.69946 -27.29143 -26.56061 -25.20020 -25.03692 -23.08230 -22.29773 -21.48565 -20.55868 -20.36270 -19.29802 -17.24429 -16.51217 -16.21044 -15.88815 -15.61152 -15.40810 -15.06370 -14.76207 -14.58848 -14.00387 -13.87311 -13.71140 -13.58988 -13.42567 -13.27230 -12.77070 -12.48737 -12.36938 -12.17565 -11.77237 -11.60830 -11.49531 -11.40129 -11.17575 -11.02632 -10.89961 -10.73433 -10.49364 -10.23527 -10.07945 -9.84842 -9.78349 -9.68888 -9.48523 -9.09881 -8.82463 -8.44857 -8.34703 -7.35088 -6.03950 -4.11562 0.82780 1.25727 1.81742 2.33648 2.74412 3.26944 3.28158 3.34975 3.37376 3.77016 4.30168 4.34736 4.50023 4.59859 4.61728 4.65308 4.69730 4.84290 5.01901 5.05824 5.19898 5.25440 5.27556 5.32397 5.45348 5.53104 5.57957 5.66439 5.70370 5.83042 5.90819 6.02296 6.06336 6.16064 6.27072 6.37060 6.38500 6.40984 6.45669 6.50900 6.77419 6.80957 6.96591 7.13416 7.30627 7.47581 7.64515 7.73161 7.95260 8.29706 8.44712 8.89788 9.26416 9.53014 11.02222 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.023610 B = 0.003055 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.641122 B = 9162.046423 C = 9955.725901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.163 4.163 3 C 0.129 3.871 4 N -0.477 5.477 5 C 0.183 3.817 6 C 0.001 3.999 7 C -0.128 4.128 8 C -0.118 4.118 9 C -0.086 4.086 10 C -0.114 4.114 11 C -0.117 4.117 12 C -0.078 4.078 13 N -0.269 5.269 14 N -0.309 5.309 15 C 0.392 3.608 16 N -0.455 5.455 17 C 0.035 3.965 18 C 0.229 3.771 19 H 0.049 0.951 20 C -0.179 4.179 21 C -0.514 4.514 22 H 0.063 0.937 23 C 0.064 3.936 24 N -0.884 5.884 25 Si 0.899 3.101 26 H -0.281 1.281 27 H -0.286 1.286 28 H -0.274 1.274 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.126 0.874 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.137 0.863 35 H 0.124 0.876 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.127 0.873 40 H 0.136 0.864 41 H 0.040 0.960 42 H 0.094 0.906 43 H 0.044 0.956 44 H 0.051 0.949 45 H 0.089 0.911 46 H 0.021 0.979 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.384 12.167 0.685 23.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.182 4.182 3 C 0.007 3.993 4 N -0.172 5.172 5 C -0.080 4.080 6 C -0.002 4.002 7 C -0.147 4.147 8 C -0.136 4.136 9 C -0.087 4.087 10 C -0.171 4.171 11 C -0.136 4.136 12 C -0.098 4.098 13 N -0.109 5.109 14 N -0.154 5.154 15 C 0.037 3.963 16 N -0.179 5.179 17 C -0.112 4.112 18 C 0.125 3.875 19 H 0.067 0.933 20 C -0.239 4.239 21 C -0.553 4.553 22 H 0.082 0.918 23 C -0.139 4.139 24 N -0.522 5.522 25 Si 0.727 3.273 26 H -0.207 1.207 27 H -0.212 1.212 28 H -0.199 1.199 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.144 0.856 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.154 0.846 35 H 0.142 0.858 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.145 0.855 40 H 0.154 0.846 41 H 0.058 0.942 42 H 0.113 0.887 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.107 0.893 46 H 0.040 0.960 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.480 11.685 1.692 22.779 hybrid contribution 0.113 -0.316 -1.647 1.680 sum -19.367 11.370 0.045 22.458 Atomic orbital electron populations 1.23905 0.95459 1.02399 0.99964 1.23240 0.96124 0.98845 0.99967 1.21138 0.91639 0.97197 0.89366 1.46216 1.12941 1.45841 1.12234 1.22421 0.97865 1.04471 0.83291 1.17468 0.88793 0.97216 0.96682 1.21778 0.91875 1.00281 1.00763 1.20865 0.98049 0.97721 0.96926 1.20028 0.95459 0.97456 0.95715 1.20800 0.94853 1.00023 1.01405 1.20971 0.91868 1.00375 1.00336 1.21213 0.99312 0.94445 0.94827 1.74299 0.98249 1.13317 1.25048 1.74933 1.21162 1.17596 1.01662 1.23246 0.83525 0.94541 0.94949 1.59344 1.30681 1.23024 1.04855 1.22390 0.98914 0.95087 0.94815 1.19377 0.81055 0.90854 0.96200 0.93280 1.22549 1.03373 0.98939 0.99004 1.21017 1.09800 1.27988 0.96471 0.91842 1.24894 0.96637 0.96547 0.95822 1.69919 1.20175 1.40533 1.21529 0.86487 0.79171 0.79601 0.82056 1.20691 1.21181 1.19884 0.87400 0.88213 0.85565 0.88263 0.87613 0.84593 0.85801 0.91154 0.91552 0.91462 0.85536 0.84635 0.94172 0.88718 0.93768 0.93004 0.89274 0.95984 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 12.99 29.01 0.38 -1.27 16 2 C -0.16 -1.96 9.58 -36.03 -0.35 -2.31 16 3 C 0.13 1.64 5.71 -5.20 -0.03 1.61 16 4 N -0.48 -8.19 2.81 -115.97 -0.33 -8.52 16 5 C 0.18 3.25 7.69 -153.79 -1.18 2.07 16 6 C 0.00 0.02 5.86 -104.97 -0.62 -0.60 16 7 C -0.13 -1.47 8.63 -39.18 -0.34 -1.81 16 8 C -0.12 -1.11 9.68 -39.64 -0.38 -1.49 16 9 C -0.09 -0.79 5.89 -104.53 -0.62 -1.40 16 10 C -0.11 -0.71 10.01 36.01 0.36 -0.35 16 11 C -0.12 -1.18 9.68 -39.64 -0.38 -1.57 16 12 C -0.08 -0.99 9.70 -39.19 -0.38 -1.37 16 13 N -0.27 -5.68 12.02 32.59 0.39 -5.29 16 14 N -0.31 -7.18 8.95 30.31 0.27 -6.90 16 15 C 0.39 8.24 6.67 -318.89 -2.13 6.11 16 16 N -0.46 -9.83 4.77 -176.09 -0.84 -10.67 16 17 C 0.04 0.65 8.75 60.06 0.53 1.17 16 18 C 0.23 5.88 2.07 -68.86 -0.14 5.74 16 19 H 0.05 1.44 8.11 -51.93 -0.42 1.02 16 20 C -0.18 -4.58 8.27 37.16 0.31 -4.28 16 21 C -0.51 -13.71 7.94 -34.44 -0.27 -13.98 16 22 H 0.06 1.64 6.75 -52.49 -0.35 1.28 16 23 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 24 N -0.88 -25.28 11.32 55.43 0.63 -24.65 16 25 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.11 0.89 8.06 -52.49 -0.42 0.46 16 30 H 0.10 0.71 6.88 -52.49 -0.36 0.35 16 31 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.10 1.03 5.43 -51.93 -0.28 0.74 16 33 H 0.11 1.28 5.81 -51.93 -0.30 0.97 16 34 H 0.14 1.43 1.95 -52.49 -0.10 1.32 16 35 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 38 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.14 1.76 7.98 -52.48 -0.42 1.34 16 41 H 0.04 0.77 6.25 -51.93 -0.32 0.45 16 42 H 0.09 1.77 6.55 -51.93 -0.34 1.43 16 43 H 0.04 0.66 5.75 -51.93 -0.30 0.37 16 44 H 0.05 1.32 5.42 -51.93 -0.28 1.04 16 45 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 46 H 0.02 0.52 6.37 -51.93 -0.33 0.19 16 47 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -31.78 369.33 -10.89 -42.67 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.22 Total: 4.00 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -5.34 Total: -12.09 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.12 Total: -56.03 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.78 -10.89 -42.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520304978.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.453 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds