Wall clock time and date at job start Tue Mar 31 2020 14:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50693 * 120.00153 * 2 1 4 4 N 1.46501 * 109.47124 * 126.34320 * 3 2 1 5 5 C 1.37552 * 127.16833 * 264.27065 * 4 3 2 6 6 C 1.47854 * 126.46903 * 0.03019 * 5 4 3 7 7 C 1.39568 * 120.14175 * 19.02763 * 6 5 4 8 8 C 1.37969 * 119.85170 * 179.78878 * 7 6 5 9 9 C 1.38355 * 120.14289 * 0.49084 * 8 7 6 10 10 C 1.50700 * 119.85421 * 179.76212 * 9 8 7 11 11 C 1.38360 * 120.29367 * 359.74285 * 9 8 7 12 12 C 1.37958 * 120.14068 * 0.02562 * 11 9 8 13 13 N 1.31254 * 107.05978 * 179.77109 * 5 4 3 14 14 N 1.28512 * 109.93617 * 0.22219 * 13 5 4 15 15 C 1.31373 * 110.07650 * 0.02562 * 14 13 5 16 16 N 1.38416 * 126.37109 * 179.97438 * 15 14 13 17 17 C 1.46896 * 110.99923 * 249.35575 * 16 15 14 18 18 C 1.46900 * 110.99721 * 13.30908 * 16 15 14 19 19 H 1.08995 * 109.47250 * 55.00018 * 18 16 15 20 20 C 1.53005 * 109.46981 * 294.99771 * 18 16 15 21 21 C 1.50703 * 109.46901 * 175.00338 * 18 16 15 22 22 H 1.07992 * 120.00115 * 359.97438 * 21 18 16 23 23 C 1.37878 * 119.99551 * 180.02562 * 21 18 16 24 24 N 1.31511 * 120.00608 * 359.97438 * 23 21 18 25 25 Si 1.86801 * 119.99545 * 179.97438 * 23 21 18 26 26 H 1.48497 * 109.47374 * 90.00174 * 25 23 21 27 27 H 1.48505 * 109.46801 * 209.99801 * 25 23 21 28 28 H 1.48503 * 109.47196 * 329.99786 * 25 23 21 29 29 H 1.07996 * 120.00118 * 183.67655 * 1 2 3 30 30 H 1.07997 * 119.99749 * 3.66642 * 1 2 3 31 31 H 1.07997 * 119.99786 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47159 * 6.34328 * 3 2 1 33 33 H 1.09006 * 109.47362 * 246.34483 * 3 2 1 34 34 H 1.08000 * 120.07473 * 0.02562 * 7 6 5 35 35 H 1.07998 * 119.92338 * 180.20687 * 8 7 6 36 36 H 1.08994 * 109.47108 * 269.97661 * 10 9 8 37 37 H 1.09001 * 109.46571 * 29.98189 * 10 9 8 38 38 H 1.08996 * 109.47027 * 149.97679 * 10 9 8 39 39 H 1.07992 * 119.93167 * 180.02562 * 11 9 8 40 40 H 1.08004 * 120.07464 * 180.02562 * 12 11 9 41 41 H 1.09002 * 109.47184 * 64.47121 * 17 16 15 42 42 H 1.08999 * 109.47056 * 184.47423 * 17 16 15 43 43 H 1.09000 * 109.46867 * 304.47008 * 17 16 15 44 44 H 1.08999 * 109.46864 * 60.00160 * 20 18 16 45 45 H 1.08996 * 109.47115 * 179.97438 * 20 18 16 46 46 H 1.08995 * 109.47330 * 300.00198 * 20 18 16 47 47 H 0.96994 * 120.00280 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0166 1.3186 1.1126 5 6 2.8293 1.8658 2.3606 6 6 1.6160 2.5595 2.8430 7 6 0.3972 2.3771 2.1879 8 6 -0.7322 3.0239 2.6458 9 6 -0.6562 3.8599 3.7456 10 6 -1.8928 4.5674 4.2369 11 6 0.5499 4.0489 4.3966 12 6 1.6857 3.4043 3.9518 13 7 3.9289 1.6508 3.0442 14 7 4.7804 1.0197 2.3175 15 6 4.2763 0.7939 1.1255 16 7 4.9041 0.1406 0.0791 17 6 5.2264 1.0752 -1.0074 18 6 6.1076 -0.5620 0.5435 19 1 5.8437 -1.2338 1.3603 20 6 7.1364 0.4585 1.0346 21 6 6.6940 -1.3592 -0.5931 22 1 6.2198 -1.3455 -1.5632 23 6 7.8353 -2.1067 -0.3940 24 7 8.4125 -2.1237 0.7875 25 14 8.5617 -3.0953 -1.8027 26 1 9.5387 -2.2575 -2.5434 27 1 9.2487 -4.2959 -1.2622 28 1 7.4752 -3.5187 -2.7222 29 1 -0.5400 -0.9333 0.0600 30 1 -0.5399 0.9334 -0.0598 31 1 1.8500 -0.9353 -0.0004 32 1 1.3607 2.1304 0.1135 33 1 2.6023 1.4135 -0.9414 34 1 0.3374 1.7280 1.3268 35 1 -1.6766 2.8810 2.1417 36 1 -1.9819 5.5322 3.7377 37 1 -2.7708 3.9608 4.0149 38 1 -1.8200 4.7207 5.3136 39 1 0.6025 4.7024 5.2547 40 1 2.6265 3.5522 4.4610 41 1 5.9529 1.8069 -0.6537 42 1 5.6463 0.5236 -1.8485 43 1 4.3193 1.5886 -1.3261 44 1 6.7123 1.0351 1.8567 45 1 8.0292 -0.0628 1.3797 46 1 7.4003 1.1303 0.2179 47 1 9.2156 -2.6493 0.9274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520304978.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:04 Heat of formation + Delta-G solvation = 137.827470 kcal Electronic energy + Delta-G solvation = -27919.252501 eV Core-core repulsion = 24297.406179 eV Total energy + Delta-G solvation = -3621.846321 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.96973 -40.24448 -39.06601 -37.44425 -34.96618 -34.24325 -33.70331 -31.93468 -31.07429 -30.48056 -28.41622 -27.58304 -27.18915 -26.57809 -24.13694 -23.33516 -23.04483 -21.68089 -21.49418 -20.74240 -18.52603 -18.22704 -17.47522 -17.37806 -17.00005 -16.58411 -16.48626 -15.96640 -15.77646 -15.37501 -15.01836 -14.73683 -14.61961 -14.46570 -14.39329 -14.29414 -13.63460 -13.46285 -13.21034 -13.00876 -12.97647 -12.96042 -12.70950 -12.60107 -12.58682 -12.33380 -12.23260 -12.10199 -12.00676 -11.78923 -11.44169 -11.16470 -10.91457 -10.78605 -10.55027 -10.51149 -9.93118 -9.66448 -8.88041 -8.12882 -6.28547 -0.17051 0.42994 0.84706 1.01839 1.43469 1.44991 1.53597 1.57407 1.84720 2.40962 2.81721 2.96156 3.16334 3.24048 3.50509 3.74405 3.79455 3.93201 3.99833 4.02612 4.13083 4.16946 4.39301 4.46434 4.48259 4.50924 4.63469 4.67109 4.79512 4.85405 4.86430 4.93891 4.95741 4.97016 5.10081 5.13914 5.21440 5.27447 5.33241 5.44054 5.50237 5.52237 5.57269 5.61347 5.64264 5.65402 5.81465 5.99058 6.02933 6.20403 6.55792 6.80798 7.40355 7.74436 8.93761 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.023610 B = 0.003055 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.641122 B = 9162.046423 C = 9955.725901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.200 4.200 3 C 0.124 3.876 4 N -0.468 5.468 5 C 0.208 3.792 6 C -0.038 4.038 7 C -0.122 4.122 8 C -0.114 4.114 9 C -0.074 4.074 10 C -0.114 4.114 11 C -0.120 4.120 12 C -0.090 4.090 13 N -0.317 5.317 14 N -0.357 5.357 15 C 0.372 3.628 16 N -0.454 5.454 17 C 0.037 3.963 18 C 0.243 3.757 19 H -0.002 1.002 20 C -0.162 4.162 21 C -0.523 4.523 22 H 0.073 0.927 23 C 0.011 3.989 24 N -0.920 5.920 25 Si 0.971 3.029 26 H -0.272 1.272 27 H -0.287 1.287 28 H -0.263 1.263 29 H 0.120 0.880 30 H 0.132 0.868 31 H 0.093 0.907 32 H 0.130 0.870 33 H 0.110 0.890 34 H 0.146 0.854 35 H 0.161 0.839 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.149 0.851 40 H 0.119 0.881 41 H 0.027 0.973 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.047 0.953 45 H 0.060 0.940 46 H 0.029 0.971 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.844 13.710 -0.999 28.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.219 4.219 3 C 0.004 3.996 4 N -0.163 5.163 5 C -0.057 4.057 6 C -0.041 4.041 7 C -0.141 4.141 8 C -0.132 4.132 9 C -0.074 4.074 10 C -0.171 4.171 11 C -0.137 4.137 12 C -0.111 4.111 13 N -0.157 5.157 14 N -0.201 5.201 15 C 0.016 3.984 16 N -0.178 5.178 17 C -0.110 4.110 18 C 0.137 3.863 19 H 0.016 0.984 20 C -0.221 4.221 21 C -0.562 4.562 22 H 0.091 0.909 23 C -0.188 4.188 24 N -0.559 5.559 25 Si 0.795 3.205 26 H -0.198 1.198 27 H -0.213 1.213 28 H -0.187 1.187 29 H 0.138 0.862 30 H 0.150 0.850 31 H 0.111 0.889 32 H 0.148 0.852 33 H 0.128 0.872 34 H 0.163 0.837 35 H 0.179 0.821 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.167 0.833 40 H 0.137 0.863 41 H 0.045 0.955 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.048 0.952 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.975 13.248 -0.008 27.392 hybrid contribution 1.188 -0.660 -1.001 1.688 sum -22.787 12.588 -1.008 26.053 Atomic orbital electron populations 1.24238 0.94188 1.04471 0.94979 1.22964 0.97144 0.97170 1.04586 1.21508 0.91408 0.98742 0.87937 1.46405 1.12156 1.44556 1.13147 1.23178 0.97808 1.01933 0.82774 1.17615 0.88473 0.99321 0.98697 1.21903 0.91307 1.00292 1.00645 1.21290 0.98577 0.96527 0.96761 1.20498 0.96064 0.96161 0.94714 1.20897 0.93587 1.00527 1.02059 1.21244 0.91364 1.00118 1.01017 1.21237 0.99924 0.95164 0.94736 1.74184 0.99810 1.15534 1.26145 1.74733 1.23342 1.19005 1.03026 1.23081 0.85060 0.95912 0.94373 1.59209 1.28864 1.24222 1.05500 1.22463 1.00531 0.94385 0.93584 1.18925 0.82421 0.90432 0.94552 0.98449 1.22334 1.02133 0.98662 0.98998 1.21310 1.09939 1.28051 0.96854 0.90940 1.25813 0.97081 0.97613 0.98333 1.70091 1.20592 1.41403 1.23787 0.85366 0.78497 0.77794 0.78804 1.19776 1.21329 1.18693 0.86169 0.85026 0.88872 0.85248 0.87178 0.83710 0.82116 0.89715 0.89940 0.90625 0.83331 0.86337 0.95452 0.88807 0.89961 0.93414 0.92112 0.95211 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 12.99 67.78 0.88 -1.20 16 2 C -0.20 -4.56 9.58 25.64 0.25 -4.32 16 3 C 0.12 2.98 5.71 85.63 0.49 3.47 16 4 N -0.47 -16.41 2.81 -520.81 -1.47 -17.88 16 5 C 0.21 7.65 7.69 136.22 1.05 8.70 16 6 C -0.04 -1.06 5.86 -20.09 -0.12 -1.18 16 7 C -0.12 -2.43 8.63 22.53 0.19 -2.23 16 8 C -0.11 -1.60 9.68 22.23 0.22 -1.38 16 9 C -0.07 -1.03 5.89 -19.81 -0.12 -1.15 16 10 C -0.11 -0.82 10.01 71.24 0.71 -0.11 16 11 C -0.12 -2.12 9.68 22.23 0.22 -1.90 16 12 C -0.09 -2.28 9.70 22.52 0.22 -2.06 16 13 N -0.32 -14.39 12.02 -50.81 -0.61 -15.00 16 14 N -0.36 -17.90 8.95 -58.01 -0.52 -18.42 16 15 C 0.37 16.53 6.67 260.12 1.74 18.27 16 16 N -0.45 -20.56 4.77 -711.02 -3.39 -23.95 16 17 C 0.04 1.38 8.75 127.69 1.12 2.50 16 18 C 0.24 13.24 2.07 44.17 0.09 13.33 16 19 H 0.00 -0.16 8.11 -2.39 -0.02 -0.18 16 20 C -0.16 -8.84 8.27 71.98 0.60 -8.25 16 21 C -0.52 -28.81 7.94 25.60 0.20 -28.61 16 22 H 0.07 3.78 6.75 -2.91 -0.02 3.76 16 23 C 0.01 0.61 5.30 84.66 0.45 1.05 16 24 N -0.92 -55.07 11.32 21.45 0.24 -54.83 16 25 Si 0.97 43.54 29.54 68.60 2.03 45.56 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 28 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 29 H 0.12 1.52 8.06 -2.91 -0.02 1.49 16 30 H 0.13 1.11 6.88 -2.91 -0.02 1.09 16 31 H 0.09 2.76 8.06 -2.91 -0.02 2.74 16 32 H 0.13 2.26 5.43 -2.39 -0.01 2.25 16 33 H 0.11 2.48 5.81 -2.38 -0.01 2.47 16 34 H 0.15 2.49 1.95 -2.91 -0.01 2.48 16 35 H 0.16 1.12 8.06 -2.91 -0.02 1.09 16 36 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.08 0.39 8.08 -2.39 -0.02 0.37 16 38 H 0.07 0.47 8.08 -2.39 -0.02 0.45 16 39 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.12 3.29 7.98 -2.91 -0.02 3.27 16 41 H 0.03 1.08 6.25 -2.39 -0.01 1.06 16 42 H 0.09 3.50 6.55 -2.39 -0.02 3.49 16 43 H 0.08 2.41 5.75 -2.39 -0.01 2.39 16 44 H 0.05 2.63 5.42 -2.39 -0.01 2.61 16 45 H 0.06 3.64 6.07 -2.39 -0.01 3.62 16 46 H 0.03 1.51 6.37 -2.39 -0.02 1.49 16 47 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -76.39 369.33 5.46 -70.93 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 1.00 Total: 18.66 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 8.18 Total: -5.08 kcal Atomic # 7 Polarization: -124.33 SS G_CDS: -5.74 Total: -130.07 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -76.39 5.46 -70.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520304978.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.760 kcal (2) G-P(sol) polarization free energy of solvation -76.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds