Wall clock time and date at job start Tue Mar 31 2020 15:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 119.99616 * 2 1 4 4 C 1.50700 * 120.00029 * 180.02562 * 2 1 3 5 5 N 1.46501 * 109.47597 * 94.26078 * 4 2 1 6 6 C 1.36740 * 127.13639 * 95.15476 * 5 4 2 7 7 C 1.50697 * 126.34779 * 0.06441 * 6 5 4 8 8 C 1.53002 * 109.47448 * 95.63717 * 7 6 5 9 9 H 1.09000 * 109.46710 * 56.23007 * 8 7 6 10 10 O 1.42902 * 109.46902 * 296.23389 * 8 7 6 11 11 C 1.50701 * 109.47170 * 176.22947 * 8 7 6 12 12 H 1.07997 * 120.00178 * 0.02562 * 11 8 7 13 13 C 1.37879 * 119.99741 * 179.97438 * 11 8 7 14 14 N 1.31515 * 119.99820 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 119.99722 * 179.97438 * 13 11 8 16 16 H 1.48504 * 109.46986 * 60.01079 * 15 13 11 17 17 H 1.48507 * 109.46956 * 180.02562 * 15 13 11 18 18 H 1.48490 * 109.47584 * 300.00401 * 15 13 11 19 19 N 1.30291 * 107.30115 * 180.02562 * 6 5 4 20 20 N 1.28525 * 110.05844 * 0.02562 * 19 6 5 21 21 C 1.31218 * 109.85584 * 0.02562 * 20 19 6 22 22 N 1.38588 * 126.46845 * 179.97438 * 21 20 19 23 23 C 1.46905 * 110.99383 * 106.73128 * 22 21 20 24 24 C 1.46898 * 111.00429 * 342.77939 * 22 21 20 25 25 C 1.52998 * 109.47180 * 189.99836 * 24 22 21 26 26 C 1.53001 * 109.47112 * 179.97438 * 25 24 22 27 27 F 1.39898 * 109.46986 * 180.02562 * 26 25 24 28 28 H 1.08000 * 120.00541 * 5.09792 * 1 2 3 29 29 H 1.08003 * 120.00147 * 185.09335 * 1 2 3 30 30 H 1.09000 * 109.46740 * 274.84132 * 3 2 1 31 31 H 1.08989 * 109.47153 * 34.84577 * 3 2 1 32 32 H 1.09005 * 109.46709 * 154.84801 * 3 2 1 33 33 H 1.08997 * 109.46756 * 334.25619 * 4 2 1 34 34 H 1.09004 * 109.46331 * 214.26013 * 4 2 1 35 35 H 1.09000 * 109.46821 * 215.63729 * 7 6 5 36 36 H 1.09005 * 109.47214 * 335.63758 * 7 6 5 37 37 H 0.96704 * 113.99814 * 304.48414 * 10 8 7 38 38 H 0.97001 * 119.99374 * 179.97438 * 14 13 11 39 39 H 1.08995 * 109.47289 * 65.67253 * 23 22 21 40 40 H 1.08997 * 109.46928 * 185.67542 * 23 22 21 41 41 H 1.08997 * 109.47281 * 305.66920 * 23 22 21 42 42 H 1.08998 * 109.46514 * 309.99679 * 24 22 21 43 43 H 1.08994 * 109.47259 * 69.99155 * 24 22 21 44 44 H 1.08998 * 109.46966 * 299.99836 * 25 24 22 45 45 H 1.08994 * 109.46837 * 59.99522 * 25 24 22 46 46 H 1.09005 * 109.46554 * 299.99465 * 26 25 24 47 47 H 1.08994 * 109.47248 * 59.99367 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.3966 -1.6762 -1.3781 6 6 3.5660 -1.4252 -2.0409 7 6 4.7702 -0.7080 -1.4873 8 6 5.7763 -1.7329 -0.9596 9 1 6.0355 -2.4307 -1.7558 10 8 5.1973 -2.4499 0.1325 11 6 7.0193 -1.0213 -0.4909 12 1 7.0850 0.0544 -0.5618 13 6 8.0722 -1.7435 0.0296 14 7 7.9920 -3.0533 0.1164 15 14 9.6132 -0.8615 0.6099 16 1 9.2604 0.0900 1.6941 17 1 10.5896 -1.8563 1.1222 18 1 10.2150 -0.1173 -0.5255 19 7 3.4463 -1.9217 -3.2395 20 7 2.2897 -2.4647 -3.3783 21 6 1.6036 -2.3422 -2.2665 22 7 0.3167 -2.8030 -2.0376 23 6 0.3276 -3.9790 -1.1573 24 6 -0.3694 -3.0985 -3.3025 25 6 -1.8515 -3.3622 -3.0291 26 6 -2.5663 -3.6694 -4.3466 27 9 -3.9216 -3.9100 -4.0967 28 1 -0.5401 0.9316 -0.0831 29 1 -0.5400 -0.9316 0.0830 30 1 2.1699 1.6632 -1.0240 31 1 1.5147 2.0414 0.5871 32 1 3.0508 1.1547 0.4368 33 1 1.4435 -2.0827 0.4454 34 1 2.9807 -1.1952 0.5780 35 1 5.2346 -0.1157 -2.2758 36 1 4.4602 -0.0514 -0.6743 37 1 4.8792 -1.8846 0.8497 38 1 8.7329 -3.5613 0.4822 39 1 0.6853 -3.6898 -0.1691 40 1 -0.6823 -4.3806 -1.0751 41 1 0.9879 -4.7392 -1.5746 42 1 -0.2700 -2.2481 -3.9770 43 1 0.0780 -3.9803 -3.7611 44 1 -1.9508 -4.2126 -2.3546 45 1 -2.2988 -2.4805 -2.5705 46 1 -2.4669 -2.8187 -5.0207 47 1 -2.1190 -4.5510 -4.8057 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524104172.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:56 Heat of formation + Delta-G solvation = -3.822914 kcal Electronic energy + Delta-G solvation = -28879.187663 eV Core-core repulsion = 24820.429695 eV Total energy + Delta-G solvation = -4058.757968 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.186 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -47.87194 -42.61749 -38.07407 -36.88558 -36.04276 -33.40372 -32.89544 -32.21002 -31.14846 -28.49052 -27.54519 -27.01430 -26.80658 -25.42277 -24.64445 -22.13286 -21.57113 -20.65186 -19.99439 -18.75667 -17.33488 -16.87257 -16.72798 -16.52106 -16.03285 -15.85265 -15.21005 -14.88197 -14.73640 -14.67287 -14.45871 -14.24177 -14.03132 -13.76700 -13.59948 -13.23477 -13.09900 -12.68457 -12.39917 -12.22022 -12.00969 -11.75960 -11.64764 -11.54309 -11.38418 -11.29808 -11.14930 -11.04942 -10.89267 -10.84157 -10.83139 -10.25353 -10.16432 -9.78393 -9.55273 -9.29907 -9.12601 -8.63040 -8.45700 -7.93793 -6.06782 -4.26600 1.80969 2.14029 2.70265 3.25301 3.26620 3.31515 3.33472 3.69918 4.33370 4.40078 4.47252 4.53559 4.55881 4.62534 4.74290 4.88621 4.97539 5.03340 5.09148 5.18103 5.22494 5.30134 5.36430 5.39867 5.46234 5.49345 5.57477 5.62006 5.67662 5.74126 5.76558 5.88659 5.94103 6.09007 6.17519 6.26138 6.31305 6.42268 6.58918 6.62278 6.70318 6.89232 7.43605 7.62647 7.76152 8.06183 8.73683 9.19120 9.21332 9.49452 10.97410 Molecular weight = 326.19amu Principal moments of inertia in cm(-1) A = 0.019535 B = 0.003005 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.005601 B = 9315.349043 C = 9999.574844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.151 4.151 3 C -0.120 4.120 4 C 0.149 3.851 5 N -0.460 5.460 6 C 0.224 3.776 7 C -0.065 4.065 8 C 0.238 3.762 9 H 0.065 0.935 10 O -0.561 6.561 11 C -0.574 4.574 12 H 0.058 0.942 13 C 0.081 3.919 14 N -0.856 5.856 15 Si 0.891 3.109 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.275 1.275 19 N -0.298 5.298 20 N -0.323 5.323 21 C 0.332 3.668 22 N -0.454 5.454 23 C 0.019 3.981 24 C 0.075 3.925 25 C -0.151 4.151 26 C 0.063 3.937 27 F -0.219 7.219 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.336 0.664 38 H 0.262 0.738 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.043 0.957 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.921 2.926 -0.372 20.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.152 4.152 3 C -0.176 4.176 4 C 0.026 3.974 5 N -0.153 5.153 6 C -0.043 4.043 7 C -0.105 4.105 8 C 0.180 3.820 9 H 0.083 0.917 10 O -0.363 6.363 11 C -0.612 4.612 12 H 0.077 0.923 13 C -0.125 4.125 14 N -0.491 5.491 15 Si 0.718 3.282 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.200 1.200 19 N -0.136 5.136 20 N -0.167 5.167 21 C -0.024 4.024 22 N -0.177 5.177 23 C -0.129 4.129 24 C -0.052 4.052 25 C -0.189 4.189 26 C 0.008 3.992 27 F -0.201 7.201 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.179 0.821 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.062 0.938 42 H 0.106 0.894 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.095 0.905 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.617 2.186 -1.885 19.828 hybrid contribution 0.762 0.690 1.691 1.979 sum -18.854 2.876 -0.194 19.074 Atomic orbital electron populations 1.23788 0.94993 1.02223 0.98248 1.21860 0.95664 0.95322 1.02384 1.20881 1.00452 0.94051 1.02255 1.20805 1.01605 0.94892 0.80049 1.46098 1.13193 1.43215 1.12785 1.25239 0.88627 1.01056 0.89385 1.21246 0.89666 0.98928 1.00675 1.19432 0.87267 0.89018 0.86316 0.91718 1.86701 1.81036 1.37754 1.30806 1.21517 1.00887 0.93619 1.45184 0.92330 1.25029 0.98145 0.94664 0.94703 1.70071 1.31352 1.05371 1.42347 0.86701 0.82839 0.79441 0.79184 1.20132 1.21212 1.20013 1.73980 1.10539 1.13841 1.15290 1.74488 1.00555 1.21120 1.20516 1.22231 0.90791 1.00796 0.88600 1.58601 1.09337 1.32981 1.16813 1.22626 1.02898 0.90459 0.96875 1.21851 0.91848 1.02472 0.89075 1.22213 0.95107 1.03863 0.97751 1.21895 0.76521 1.02849 0.97939 1.92766 1.35279 1.96199 1.95815 0.88269 0.87845 0.91631 0.91592 0.91140 0.88775 0.87698 0.88575 0.90975 0.82079 0.92835 0.90883 0.89625 0.93828 0.89445 0.92454 0.90442 0.89767 0.90455 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 13.91 29.01 0.40 -1.11 16 2 C -0.15 -1.69 5.64 -101.06 -0.57 -2.26 16 3 C -0.12 -1.27 9.91 36.01 0.36 -0.91 16 4 C 0.15 1.90 6.06 -5.19 -0.03 1.87 16 5 N -0.46 -7.45 2.79 -115.37 -0.32 -7.78 16 6 C 0.22 4.35 7.06 -154.02 -1.09 3.27 16 7 C -0.06 -1.26 5.06 -27.88 -0.14 -1.40 16 8 C 0.24 5.76 2.83 -27.88 -0.08 5.68 16 9 H 0.07 1.84 8.14 -51.93 -0.42 1.41 16 10 O -0.56 -13.38 12.30 -35.23 -0.43 -13.81 16 11 C -0.57 -14.93 8.79 -34.44 -0.30 -15.24 16 12 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 13 C 0.08 2.21 5.40 -17.82 -0.10 2.11 16 14 N -0.86 -24.79 12.84 55.43 0.71 -24.08 16 15 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 N -0.30 -6.43 12.18 32.99 0.40 -6.03 16 20 N -0.32 -6.31 11.43 30.31 0.35 -5.96 16 21 C 0.33 5.42 6.88 -318.88 -2.19 3.23 16 22 N -0.45 -5.50 4.78 -182.39 -0.87 -6.38 16 23 C 0.02 0.20 9.38 60.07 0.56 0.76 16 24 C 0.08 0.78 4.37 -3.83 -0.02 0.76 16 25 C -0.15 -1.16 5.61 -26.73 -0.15 -1.31 16 26 C 0.06 0.46 7.55 37.16 0.28 0.74 16 27 F -0.22 -2.15 17.36 2.25 0.04 -2.11 16 28 H 0.10 0.86 8.05 -52.49 -0.42 0.44 16 29 H 0.10 0.96 7.98 -52.48 -0.42 0.55 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.59 8.10 -51.93 -0.42 0.16 16 32 H 0.07 0.76 7.17 -51.93 -0.37 0.39 16 33 H 0.09 1.06 5.99 -51.93 -0.31 0.75 16 34 H 0.10 1.36 5.92 -51.93 -0.31 1.05 16 35 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 36 H 0.07 1.22 6.53 -51.93 -0.34 0.88 16 37 H 0.34 6.77 7.74 45.56 0.35 7.12 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.07 0.75 6.21 -51.93 -0.32 0.43 16 40 H 0.09 0.66 6.10 -51.93 -0.32 0.34 16 41 H 0.04 0.53 8.11 -51.93 -0.42 0.11 16 42 H 0.09 0.99 8.01 -51.93 -0.42 0.58 16 43 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 44 H 0.08 0.56 6.37 -51.93 -0.33 0.23 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 388.28 15.07 5.85 5.85 Total: -1.00 -32.88 388.28 -8.90 -41.79 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -6.55 Total: 6.84 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -3.06 Total: -3.82 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: 0.27 Total: -50.22 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.43 Total: -13.81 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.88 -8.90 -41.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524104172.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.965 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds