Wall clock time and date at job start Tue Mar 31 2020 15:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 119.99616 * 2 1 4 4 C 1.50700 * 120.00029 * 180.02562 * 2 1 3 5 5 N 1.46501 * 109.47597 * 94.26078 * 4 2 1 6 6 C 1.36740 * 127.13639 * 95.15476 * 5 4 2 7 7 C 1.50697 * 126.34779 * 0.06441 * 6 5 4 8 8 C 1.53002 * 109.47448 * 95.63717 * 7 6 5 9 9 H 1.09000 * 109.46710 * 56.23007 * 8 7 6 10 10 O 1.42902 * 109.46902 * 296.23389 * 8 7 6 11 11 C 1.50701 * 109.47170 * 176.22947 * 8 7 6 12 12 H 1.07997 * 120.00178 * 0.02562 * 11 8 7 13 13 C 1.37879 * 119.99741 * 179.97438 * 11 8 7 14 14 N 1.31515 * 119.99820 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 119.99722 * 179.97438 * 13 11 8 16 16 H 1.48504 * 109.46986 * 60.01079 * 15 13 11 17 17 H 1.48507 * 109.46956 * 180.02562 * 15 13 11 18 18 H 1.48490 * 109.47584 * 300.00401 * 15 13 11 19 19 N 1.30291 * 107.30115 * 180.02562 * 6 5 4 20 20 N 1.28525 * 110.05844 * 0.02562 * 19 6 5 21 21 C 1.31218 * 109.85584 * 0.02562 * 20 19 6 22 22 N 1.38588 * 126.46845 * 179.97438 * 21 20 19 23 23 C 1.46905 * 110.99383 * 106.73128 * 22 21 20 24 24 C 1.46898 * 111.00429 * 342.77939 * 22 21 20 25 25 C 1.52998 * 109.47180 * 189.99836 * 24 22 21 26 26 C 1.53001 * 109.47112 * 179.97438 * 25 24 22 27 27 F 1.39898 * 109.46986 * 180.02562 * 26 25 24 28 28 H 1.08000 * 120.00541 * 5.09792 * 1 2 3 29 29 H 1.08003 * 120.00147 * 185.09335 * 1 2 3 30 30 H 1.09000 * 109.46740 * 274.84132 * 3 2 1 31 31 H 1.08989 * 109.47153 * 34.84577 * 3 2 1 32 32 H 1.09005 * 109.46709 * 154.84801 * 3 2 1 33 33 H 1.08997 * 109.46756 * 334.25619 * 4 2 1 34 34 H 1.09004 * 109.46331 * 214.26013 * 4 2 1 35 35 H 1.09000 * 109.46821 * 215.63729 * 7 6 5 36 36 H 1.09005 * 109.47214 * 335.63758 * 7 6 5 37 37 H 0.96704 * 113.99814 * 304.48414 * 10 8 7 38 38 H 0.97001 * 119.99374 * 179.97438 * 14 13 11 39 39 H 1.08995 * 109.47289 * 65.67253 * 23 22 21 40 40 H 1.08997 * 109.46928 * 185.67542 * 23 22 21 41 41 H 1.08997 * 109.47281 * 305.66920 * 23 22 21 42 42 H 1.08998 * 109.46514 * 309.99679 * 24 22 21 43 43 H 1.08994 * 109.47259 * 69.99155 * 24 22 21 44 44 H 1.08998 * 109.46966 * 299.99836 * 25 24 22 45 45 H 1.08994 * 109.46837 * 59.99522 * 25 24 22 46 46 H 1.09005 * 109.46554 * 299.99465 * 26 25 24 47 47 H 1.08994 * 109.47248 * 59.99367 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.3966 -1.6762 -1.3781 6 6 3.5660 -1.4252 -2.0409 7 6 4.7702 -0.7080 -1.4873 8 6 5.7763 -1.7329 -0.9596 9 1 6.0355 -2.4307 -1.7558 10 8 5.1973 -2.4499 0.1325 11 6 7.0193 -1.0213 -0.4909 12 1 7.0850 0.0544 -0.5618 13 6 8.0722 -1.7435 0.0296 14 7 7.9920 -3.0533 0.1164 15 14 9.6132 -0.8615 0.6099 16 1 9.2604 0.0900 1.6941 17 1 10.5896 -1.8563 1.1222 18 1 10.2150 -0.1173 -0.5255 19 7 3.4463 -1.9217 -3.2395 20 7 2.2897 -2.4647 -3.3783 21 6 1.6036 -2.3422 -2.2665 22 7 0.3167 -2.8030 -2.0376 23 6 0.3276 -3.9790 -1.1573 24 6 -0.3694 -3.0985 -3.3025 25 6 -1.8515 -3.3622 -3.0291 26 6 -2.5663 -3.6694 -4.3466 27 9 -3.9216 -3.9100 -4.0967 28 1 -0.5401 0.9316 -0.0831 29 1 -0.5400 -0.9316 0.0830 30 1 2.1699 1.6632 -1.0240 31 1 1.5147 2.0414 0.5871 32 1 3.0508 1.1547 0.4368 33 1 1.4435 -2.0827 0.4454 34 1 2.9807 -1.1952 0.5780 35 1 5.2346 -0.1157 -2.2758 36 1 4.4602 -0.0514 -0.6743 37 1 4.8792 -1.8846 0.8497 38 1 8.7329 -3.5613 0.4822 39 1 0.6853 -3.6898 -0.1691 40 1 -0.6823 -4.3806 -1.0751 41 1 0.9879 -4.7392 -1.5746 42 1 -0.2700 -2.2481 -3.9770 43 1 0.0780 -3.9803 -3.7611 44 1 -1.9508 -4.2126 -2.3546 45 1 -2.2988 -2.4805 -2.5705 46 1 -2.4669 -2.8187 -5.0207 47 1 -2.1190 -4.5510 -4.8057 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524104172.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:55 Heat of formation + Delta-G solvation = -23.824279 kcal Electronic energy + Delta-G solvation = -28880.054987 eV Core-core repulsion = 24820.429695 eV Total energy + Delta-G solvation = -4059.625292 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.186 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.54842 -43.98723 -39.09423 -38.19616 -37.58033 -34.47671 -34.27205 -33.89717 -32.59605 -29.95776 -28.59213 -28.00711 -27.76274 -27.05897 -25.66766 -23.66692 -22.67584 -21.90741 -21.30052 -19.75541 -19.11272 -18.12092 -17.62366 -17.49505 -17.08074 -16.75624 -16.65590 -16.35891 -16.00417 -15.87382 -15.52741 -15.41096 -15.18185 -15.03871 -14.91327 -14.40490 -14.22154 -14.08601 -13.30682 -13.21988 -13.10724 -13.01234 -12.86474 -12.78226 -12.69027 -12.57810 -12.43118 -12.37245 -12.27036 -12.05122 -12.00606 -11.59425 -11.46683 -11.31768 -10.98306 -10.69000 -10.66667 -10.21957 -10.10987 -9.35425 -8.12391 -6.38827 0.76604 0.90930 1.43769 1.46055 1.53396 1.62797 1.81979 2.41098 2.65362 3.14076 3.44120 3.59320 3.69375 3.74600 3.77196 3.85785 3.96854 4.04911 4.13665 4.22148 4.24340 4.28982 4.38219 4.48863 4.52718 4.53876 4.61201 4.62107 4.70071 4.77835 4.85182 4.86204 4.90834 4.99762 5.00475 5.08199 5.15157 5.24319 5.50023 5.60791 5.62352 5.64366 5.71242 5.84716 6.03865 6.21469 6.71998 7.32754 7.50978 7.77338 8.92160 Molecular weight = 326.19amu Principal moments of inertia in cm(-1) A = 0.019535 B = 0.003005 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.005601 B = 9315.349043 C = 9999.574844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.170 4.170 3 C -0.118 4.118 4 C 0.143 3.857 5 N -0.454 5.454 6 C 0.211 3.789 7 C -0.046 4.046 8 C 0.246 3.754 9 H 0.011 0.989 10 O -0.574 6.574 11 C -0.582 4.582 12 H 0.071 0.929 13 C 0.026 3.974 14 N -0.901 5.901 15 Si 0.961 3.039 16 H -0.261 1.261 17 H -0.290 1.290 18 H -0.270 1.270 19 N -0.339 5.339 20 N -0.358 5.358 21 C 0.348 3.652 22 N -0.443 5.443 23 C 0.018 3.982 24 C 0.076 3.924 25 C -0.137 4.137 26 C 0.061 3.939 27 F -0.232 7.232 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.353 0.647 38 H 0.260 0.740 39 H 0.077 0.923 40 H 0.121 0.879 41 H 0.024 0.976 42 H 0.075 0.925 43 H 0.049 0.951 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.864 4.184 1.094 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.171 4.171 3 C -0.174 4.174 4 C 0.022 3.978 5 N -0.146 5.146 6 C -0.059 4.059 7 C -0.086 4.086 8 C 0.187 3.813 9 H 0.029 0.971 10 O -0.378 6.378 11 C -0.619 4.619 12 H 0.089 0.911 13 C -0.176 4.176 14 N -0.538 5.538 15 Si 0.785 3.215 16 H -0.185 1.185 17 H -0.216 1.216 18 H -0.195 1.195 19 N -0.178 5.178 20 N -0.202 5.202 21 C -0.010 4.010 22 N -0.168 5.168 23 C -0.129 4.129 24 C -0.051 4.051 25 C -0.175 4.175 26 C 0.006 3.994 27 F -0.213 7.213 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.129 0.871 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.199 0.801 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.139 0.861 41 H 0.043 0.957 42 H 0.094 0.906 43 H 0.068 0.932 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.586 3.469 -0.402 21.866 hybrid contribution 1.211 0.254 1.238 1.750 sum -20.375 3.722 0.836 20.729 Atomic orbital electron populations 1.24005 0.94449 1.03370 0.95455 1.21784 0.96131 0.94520 1.04698 1.20866 1.00507 0.94340 1.01720 1.21085 1.02081 0.96575 0.78071 1.46247 1.12102 1.42469 1.13803 1.25026 0.89676 1.01664 0.89499 1.20896 0.88797 0.97706 1.01227 1.19062 0.88564 0.88497 0.85189 0.97139 1.86621 1.81078 1.38638 1.31490 1.21951 1.01531 0.94307 1.44143 0.91081 1.25914 1.01526 0.95233 0.94958 1.70231 1.32400 1.07160 1.44017 0.85598 0.78643 0.78241 0.79008 1.18529 1.21566 1.19495 1.73866 1.11952 1.15017 1.16962 1.74383 1.00585 1.22692 1.22560 1.22693 0.91593 0.99050 0.87649 1.58833 1.06574 1.33659 1.17711 1.22748 1.04710 0.89132 0.96292 1.21891 0.93401 1.01644 0.88186 1.22081 0.92697 1.04428 0.98270 1.21999 0.75631 1.03904 0.97902 1.92741 1.36375 1.96321 1.95902 0.86694 0.87055 0.92949 0.89687 0.91713 0.87082 0.88107 0.88928 0.88197 0.80124 0.93110 0.90412 0.86089 0.95743 0.90612 0.93215 0.89355 0.89408 0.89493 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 13.91 67.78 0.94 -1.25 16 2 C -0.17 -3.42 5.64 -16.49 -0.09 -3.51 16 3 C -0.12 -2.27 9.91 71.24 0.71 -1.57 16 4 C 0.14 3.42 6.06 85.63 0.52 3.94 16 5 N -0.45 -14.52 2.79 -518.91 -1.45 -15.97 16 6 C 0.21 8.34 7.06 137.64 0.97 9.31 16 7 C -0.05 -1.82 5.06 29.85 0.15 -1.67 16 8 C 0.25 12.22 2.83 29.85 0.08 12.30 16 9 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 10 O -0.57 -27.86 12.30 -148.98 -1.83 -29.70 16 11 C -0.58 -30.42 8.79 25.60 0.22 -30.19 16 12 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 13 C 0.03 1.43 5.40 84.66 0.46 1.89 16 14 N -0.90 -53.45 12.84 21.45 0.28 -53.17 16 15 Si 0.96 42.07 29.54 68.60 2.03 44.09 16 16 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 17 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 19 N -0.34 -15.20 12.18 -49.54 -0.60 -15.80 16 20 N -0.36 -14.37 11.43 -58.01 -0.66 -15.03 16 21 C 0.35 11.22 6.88 260.11 1.79 13.01 16 22 N -0.44 -10.04 4.78 -730.95 -3.49 -13.53 16 23 C 0.02 0.33 9.38 127.69 1.20 1.53 16 24 C 0.08 1.48 4.37 86.30 0.38 1.85 16 25 C -0.14 -1.75 5.61 30.59 0.17 -1.58 16 26 C 0.06 0.76 7.55 71.98 0.54 1.30 16 27 F -0.23 -4.08 17.36 44.97 0.78 -3.30 16 28 H 0.11 1.55 8.05 -2.91 -0.02 1.53 16 29 H 0.11 1.64 7.98 -2.91 -0.02 1.62 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.28 8.10 -2.39 -0.02 1.26 16 32 H 0.06 1.30 7.17 -2.38 -0.02 1.28 16 33 H 0.11 2.25 5.99 -2.39 -0.01 2.23 16 34 H 0.10 2.49 5.92 -2.39 -0.01 2.47 16 35 H 0.09 3.67 8.14 -2.39 -0.02 3.65 16 36 H 0.10 3.30 6.53 -2.38 -0.02 3.29 16 37 H 0.35 14.17 7.74 -74.05 -0.57 13.59 16 38 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 39 H 0.08 1.40 6.21 -2.39 -0.01 1.39 16 40 H 0.12 1.43 6.10 -2.39 -0.01 1.41 16 41 H 0.02 0.56 8.11 -2.39 -0.02 0.54 16 42 H 0.08 1.67 8.01 -2.39 -0.02 1.65 16 43 H 0.05 1.06 8.12 -2.39 -0.02 1.04 16 44 H 0.09 0.96 6.37 -2.39 -0.02 0.95 16 45 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 47 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -73.50 388.28 3.50 -70.00 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.41 Total: 27.05 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 8.04 Total: 5.35 kcal Atomic # 7 Polarization: -107.57 SS G_CDS: -5.93 Total: -113.50 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -1.83 Total: -29.70 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.78 Total: -3.30 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -73.50 3.50 -70.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524104172.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.176 kcal (2) G-P(sol) polarization free energy of solvation -73.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds