Wall clock time and date at job start Tue Mar 31 2020 14:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00055 * 2 1 4 4 C 1.52996 * 109.47591 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47697 * 185.85150 * 4 3 2 6 6 C 1.53003 * 109.47127 * 305.85612 * 4 3 2 7 7 C 1.50696 * 109.47320 * 185.00158 * 6 4 3 8 8 C 1.38240 * 119.99166 * 269.71945 * 7 6 4 9 9 C 1.38243 * 119.99356 * 179.76970 * 8 7 6 10 10 C 1.38238 * 120.00032 * 0.50062 * 9 8 7 11 11 C 1.38234 * 119.99892 * 359.75773 * 10 9 8 12 12 C 1.38228 * 120.00600 * 89.99560 * 7 6 4 13 13 N 1.46504 * 109.47104 * 65.84634 * 4 3 2 14 14 C 1.46497 * 120.00557 * 294.20550 * 13 4 3 15 15 C 1.38823 * 119.99726 * 114.20075 * 13 4 3 16 16 C 1.39795 * 119.58836 * 185.02480 * 15 13 4 17 17 C 1.38589 * 119.49541 * 179.97438 * 16 15 13 18 18 C 1.38390 * 118.68314 * 359.97438 * 17 16 15 19 19 C 1.40563 * 119.14522 * 0.02562 * 18 17 16 20 20 C 1.41313 * 119.78068 * 180.27936 * 19 18 17 21 21 H 1.08000 * 120.00418 * 359.72483 * 20 19 18 22 22 C 1.40032 * 119.99792 * 179.72271 * 20 19 18 23 23 N 1.30747 * 119.99755 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00040 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46991 * 90.00211 * 24 22 20 26 26 H 1.48497 * 109.47085 * 210.00133 * 24 22 20 27 27 H 1.48506 * 109.47245 * 330.00306 * 24 22 20 28 28 N 1.31959 * 119.58365 * 5.00245 * 15 13 4 29 29 H 1.08997 * 109.47604 * 59.99852 * 1 2 3 30 30 H 1.08997 * 109.47244 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47321 * 300.00119 * 1 2 3 32 32 H 1.08996 * 109.47520 * 59.99975 * 3 2 1 33 33 H 1.09007 * 109.47198 * 300.00298 * 3 2 1 34 34 H 1.09008 * 109.46216 * 304.99543 * 6 4 3 35 35 H 1.08995 * 109.47327 * 64.99292 * 6 4 3 36 36 H 1.07996 * 120.00407 * 0.02562 * 8 7 6 37 37 H 1.07997 * 119.99871 * 180.23963 * 9 8 7 38 38 H 1.08003 * 119.99864 * 179.72557 * 10 9 8 39 39 H 1.08003 * 119.99908 * 179.97438 * 11 10 9 40 40 H 1.08004 * 120.00078 * 0.02562 * 12 7 6 41 41 H 1.09001 * 109.47097 * 264.54414 * 14 13 4 42 42 H 1.09002 * 109.46491 * 24.54371 * 14 13 4 43 43 H 1.08994 * 109.47169 * 144.54584 * 14 13 4 44 44 H 1.08006 * 120.25224 * 359.95787 * 16 15 13 45 45 H 1.08002 * 120.66317 * 179.97438 * 17 16 15 46 46 H 1.07994 * 120.42842 * 180.02562 * 18 17 16 47 47 H 0.96999 * 119.99896 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.9784 2.1752 0.1041 6 6 3.9776 0.3020 1.1682 7 6 5.4827 0.2825 1.2416 8 6 6.1957 -0.6810 0.5529 9 6 7.5766 -0.6960 0.6164 10 6 8.2438 0.2460 1.3769 11 6 7.5305 1.2062 2.0698 12 6 6.1499 1.2244 2.0021 13 7 3.9771 0.5830 -1.2613 14 6 3.6204 -0.8025 -1.5763 15 6 4.7337 1.3259 -2.1573 16 6 5.0613 0.7806 -3.4022 17 6 5.8162 1.5240 -4.2955 18 6 6.2249 2.7931 -3.9244 19 6 5.8635 3.2859 -2.6585 20 6 6.2685 4.5822 -2.2681 21 1 6.8575 5.1891 -2.9397 22 6 5.9061 5.0799 -1.0104 23 7 5.1934 4.3449 -0.1971 24 14 6.4421 6.7931 -0.4940 25 1 5.4111 7.7794 -0.9057 26 1 6.6074 6.8364 0.9811 27 1 7.7338 7.1256 -1.1469 28 7 5.1343 2.5381 -1.8235 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 3.5736 0.7017 2.0984 35 1 3.6080 -0.7123 1.0177 36 1 5.6742 -1.4194 -0.0380 37 1 8.1339 -1.4463 0.0753 38 1 9.3224 0.2316 1.4300 39 1 8.0517 1.9419 2.6642 40 1 5.5926 1.9741 2.5441 41 1 4.4366 -1.4632 -1.2844 42 1 2.7173 -1.0779 -1.0315 43 1 3.4417 -0.8971 -2.6474 44 1 4.7288 -0.2127 -3.6656 45 1 6.0805 1.1211 -5.2620 46 1 6.8138 3.3971 -4.5986 47 1 4.9427 4.6894 0.6742 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645711326.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:24 Heat of formation + Delta-G solvation = 18.556602 kcal Electronic energy + Delta-G solvation = -29109.971526 eV Core-core repulsion = 25450.660481 eV Total energy + Delta-G solvation = -3659.311045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.71012 -39.76576 -38.96411 -37.05096 -35.32186 -33.78209 -32.25915 -31.66577 -31.39297 -30.52983 -27.77185 -27.21372 -27.00688 -26.06503 -23.57800 -23.31535 -22.64375 -22.04926 -20.53393 -19.28497 -18.10616 -17.71447 -16.95955 -16.86469 -16.50044 -16.39085 -16.03262 -15.91005 -15.82204 -15.74863 -14.97393 -14.67255 -14.62556 -14.17206 -13.92185 -13.87930 -13.60192 -13.49047 -13.18485 -13.08940 -12.84317 -12.71231 -12.66046 -12.58223 -12.48086 -12.16458 -12.07412 -11.83364 -11.68367 -11.65495 -11.46253 -11.17018 -10.55915 -10.35973 -9.70343 -9.65494 -9.39778 -9.26746 -8.14848 -7.98289 -6.37366 0.62705 0.65952 1.13742 1.42646 1.43825 1.54029 1.61016 2.28681 2.52870 2.93005 3.01317 3.02588 3.93080 4.05147 4.13227 4.20461 4.25632 4.28684 4.31942 4.36184 4.50579 4.54156 4.56958 4.60920 4.61945 4.74099 4.80004 4.83866 4.86902 4.89094 4.92748 5.03437 5.06442 5.08262 5.17751 5.26790 5.30620 5.35546 5.44592 5.55321 5.69699 5.72337 5.83925 5.90453 6.05048 6.18488 6.22923 6.28595 6.30037 6.74391 6.81929 6.99999 7.32470 8.43378 8.58683 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.008760 B = 0.005893 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3195.565914 B = 4750.212160 C = 5336.780537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.393 6.393 3 C 0.066 3.934 4 C 0.155 3.845 5 H 0.118 0.882 6 C -0.073 4.073 7 C -0.069 4.069 8 C -0.120 4.120 9 C -0.135 4.135 10 C -0.139 4.139 11 C -0.131 4.131 12 C -0.117 4.117 13 N -0.599 5.599 14 C 0.099 3.901 15 C 0.403 3.597 16 C -0.372 4.372 17 C -0.032 4.032 18 C -0.352 4.352 19 C 0.263 3.737 20 C -0.469 4.469 21 H 0.075 0.925 22 C 0.038 3.962 23 N -0.731 5.731 24 Si 0.972 3.028 25 H -0.267 1.267 26 H -0.267 1.267 27 H -0.266 1.266 28 N -0.541 5.541 29 H 0.034 0.966 30 H 0.102 0.898 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.028 0.972 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.119 0.881 41 H 0.038 0.962 42 H 0.099 0.901 43 H 0.052 0.948 44 H 0.113 0.887 45 H 0.120 0.880 46 H 0.093 0.907 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.135 -8.139 6.919 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.312 6.312 3 C -0.012 4.012 4 C 0.051 3.949 5 H 0.136 0.864 6 C -0.111 4.111 7 C -0.069 4.069 8 C -0.138 4.138 9 C -0.153 4.153 10 C -0.157 4.157 11 C -0.149 4.149 12 C -0.135 4.135 13 N -0.314 5.314 14 C -0.044 4.044 15 C 0.163 3.837 16 C -0.398 4.398 17 C -0.056 4.056 18 C -0.375 4.375 19 C 0.136 3.864 20 C -0.501 4.501 21 H 0.093 0.907 22 C -0.185 4.185 23 N -0.352 5.352 24 Si 0.794 3.206 25 H -0.192 1.192 26 H -0.191 1.191 27 H -0.190 1.190 28 N -0.263 5.263 29 H 0.052 0.948 30 H 0.120 0.880 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.145 0.855 40 H 0.137 0.863 41 H 0.056 0.944 42 H 0.118 0.882 43 H 0.070 0.930 44 H 0.131 0.869 45 H 0.137 0.863 46 H 0.111 0.889 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.428 -8.082 8.003 12.603 hybrid contribution 0.457 0.840 -1.142 1.489 sum -4.971 -7.242 6.861 11.146 Atomic orbital electron populations 1.22884 0.80421 1.03665 1.00133 1.87813 1.20645 1.27483 1.95260 1.22901 0.93933 0.84751 0.99613 1.21184 0.90824 0.99793 0.83132 0.86439 1.20833 0.90565 1.01416 0.98301 1.19879 0.96261 0.94809 0.95980 1.21169 0.94329 0.99347 0.98907 1.21308 0.94766 0.99803 0.99452 1.21279 1.00366 0.95912 0.98183 1.21267 0.94476 0.98792 1.00390 1.21092 0.94775 0.97961 0.99721 1.45984 1.55822 1.11762 1.17831 1.21813 1.00646 0.81092 1.00847 1.18884 0.87995 0.89810 0.86966 1.20959 1.17898 1.03342 0.97555 1.20908 0.93874 0.93196 0.97601 1.21635 1.15812 0.99413 1.00621 1.18602 0.87491 0.92716 0.87589 1.19761 1.30318 0.98736 1.01324 0.90671 1.26644 0.93880 1.02186 0.95791 1.70133 1.23201 1.35825 1.06054 0.85370 0.79351 0.77811 0.78103 1.19171 1.19096 1.18992 1.68161 1.19881 1.04579 1.33706 0.94753 0.87983 0.93275 0.91663 0.95396 0.89824 0.89980 0.86138 0.85312 0.84985 0.85516 0.86345 0.94361 0.88245 0.92978 0.86944 0.86253 0.88907 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.39 -10.54 7.04 -148.98 -1.05 -11.59 16 3 C 0.07 2.07 5.73 71.98 0.41 2.48 16 4 C 0.16 5.69 2.57 44.99 0.12 5.81 16 5 H 0.12 5.26 5.82 -2.39 -0.01 5.24 16 6 C -0.07 -2.29 4.41 29.85 0.13 -2.16 16 7 C -0.07 -2.43 4.95 -19.87 -0.10 -2.53 16 8 C -0.12 -4.15 9.22 22.27 0.21 -3.94 16 9 C -0.14 -4.51 10.05 22.27 0.22 -4.29 16 10 C -0.14 -4.58 10.05 22.27 0.22 -4.35 16 11 C -0.13 -4.47 10.05 22.27 0.22 -4.25 16 12 C -0.12 -4.17 9.70 22.27 0.22 -3.96 16 13 N -0.60 -23.49 2.27 -704.57 -1.60 -25.08 16 14 C 0.10 3.15 8.76 127.77 1.12 4.27 16 15 C 0.40 19.49 7.38 133.42 0.98 20.47 16 16 C -0.37 -17.25 9.28 22.73 0.21 -17.04 16 17 C -0.03 -1.49 10.15 22.39 0.23 -1.26 16 18 C -0.35 -18.50 9.83 22.87 0.22 -18.28 16 19 C 0.26 14.94 6.55 40.18 0.26 15.20 16 20 C -0.47 -25.91 9.14 23.46 0.21 -25.70 16 21 H 0.08 4.02 7.85 -2.91 -0.02 3.99 16 22 C 0.04 1.91 5.50 85.29 0.47 2.38 16 23 N -0.73 -36.78 10.48 21.84 0.23 -36.56 16 24 Si 0.97 38.27 29.56 68.60 2.03 40.30 16 25 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 26 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 27 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 28 N -0.54 -29.27 6.37 -186.58 -1.19 -30.46 16 29 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.08 2.33 8.09 -2.38 -0.02 2.31 16 35 H 0.08 2.39 6.71 -2.39 -0.02 2.37 16 36 H 0.12 3.91 5.62 -2.91 -0.02 3.89 16 37 H 0.13 3.69 8.06 -2.91 -0.02 3.66 16 38 H 0.13 3.63 8.06 -2.91 -0.02 3.60 16 39 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 40 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 41 H 0.04 1.17 5.77 -2.39 -0.01 1.15 16 42 H 0.10 2.86 4.96 -2.39 -0.01 2.85 16 43 H 0.05 1.66 6.25 -2.39 -0.01 1.65 16 44 H 0.11 4.60 6.12 -2.91 -0.02 4.58 16 45 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 46 H 0.09 4.65 8.06 -2.91 -0.02 4.63 16 47 H 0.27 12.47 8.29 -92.71 -0.77 11.70 16 Total: -1.00 -63.33 375.86 6.00 -57.33 By element: Atomic # 1 Polarization: 40.48 SS G_CDS: 0.97 Total: 41.45 kcal Atomic # 6 Polarization: -42.01 SS G_CDS: 6.61 Total: -35.39 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -2.56 Total: -92.10 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -1.05 Total: -11.59 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Total: -63.33 6.00 -57.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645711326.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.884 kcal (2) G-P(sol) polarization free energy of solvation -63.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds