Wall clock time and date at job start Tue Mar 31 2020 14:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38356 * 119.85186 * 2 1 4 4 C 1.37960 * 120.14283 * 180.02562 * 3 2 1 5 5 C 1.39566 * 119.85296 * 359.97027 * 4 3 2 6 6 C 1.47850 * 120.14029 * 179.97438 * 5 4 3 7 7 N 1.31258 * 126.47807 * 342.07462 * 6 5 4 8 8 N 1.28508 * 109.94090 * 179.97438 * 7 6 5 9 9 C 1.31380 * 110.07512 * 359.76080 * 8 7 6 10 10 N 1.38410 * 126.36820 * 180.24514 * 9 8 7 11 11 C 1.46898 * 111.00022 * 236.20343 * 10 9 8 12 12 C 1.50695 * 109.47184 * 189.99737 * 11 10 9 13 13 H 1.07995 * 120.00360 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99699 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00259 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99538 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47625 * 60.00514 * 16 14 12 18 18 H 1.48511 * 109.46833 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47232 * 299.99696 * 16 14 12 20 20 C 1.46898 * 111.00025 * 0.16022 * 10 9 8 21 21 C 1.52995 * 109.47512 * 69.99753 * 20 10 9 22 22 C 1.52996 * 117.50248 * 243.74815 * 21 20 10 23 23 C 1.52994 * 117.50063 * 175.08483 * 21 20 10 24 24 N 1.36460 * 107.25996 * 0.37786 * 9 8 7 25 25 C 1.46503 * 127.16555 * 179.89812 * 24 9 8 26 26 C 1.39567 * 119.71589 * 0.26144 * 5 4 3 27 27 C 1.37967 * 119.84815 * 359.48778 * 26 5 4 28 28 H 1.09000 * 109.46689 * 90.00510 * 1 2 3 29 29 H 1.09003 * 109.46471 * 209.99963 * 1 2 3 30 30 H 1.08992 * 109.47623 * 330.00162 * 1 2 3 31 31 H 1.08000 * 119.92748 * 359.97438 * 3 2 1 32 32 H 1.07996 * 120.06991 * 180.02562 * 4 3 2 33 33 H 1.08999 * 109.46914 * 310.00457 * 11 10 9 34 34 H 1.09005 * 109.47113 * 70.00030 * 11 10 9 35 35 H 0.97000 * 119.99741 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.47038 * 190.00393 * 20 10 9 37 37 H 1.09008 * 109.46868 * 310.00106 * 20 10 9 38 38 H 1.09005 * 115.54924 * 29.42169 * 21 20 10 39 39 H 1.09003 * 117.50088 * 359.97438 * 22 21 20 40 40 H 1.09001 * 117.49799 * 145.01933 * 22 21 20 41 41 H 1.09002 * 117.50232 * 214.98214 * 23 21 20 42 42 H 1.08997 * 117.50235 * 0.02562 * 23 21 20 43 43 H 1.08994 * 109.47225 * 263.98476 * 25 24 9 44 44 H 1.09006 * 109.47200 * 143.98376 * 25 24 9 45 45 H 1.08995 * 109.46912 * 23.99023 * 25 24 9 46 46 H 1.07998 * 120.07711 * 179.72244 * 26 5 4 47 47 H 1.08001 * 119.92087 * 180.25832 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5753 1.2070 -0.0005 5 6 4.2762 0.0001 -0.0004 6 6 5.7547 0.0002 -0.0016 7 7 6.5347 1.0042 -0.3275 8 7 7.7668 0.6565 -0.2152 9 6 7.8482 -0.5892 0.1942 10 7 9.0115 -1.3008 0.4313 11 6 9.0437 -2.5366 -0.3623 12 6 10.1911 -3.3988 0.0971 13 1 10.8320 -3.0627 0.8986 14 6 10.4219 -4.6173 -0.5054 15 7 9.6411 -5.0270 -1.4811 16 14 11.8438 -5.6864 0.0645 17 1 11.6653 -6.0239 1.4996 18 1 11.8756 -6.9363 -0.7370 19 1 13.1204 -4.9496 -0.1157 20 6 10.1971 -0.4746 0.1673 21 6 10.3117 0.6105 1.2398 22 6 10.1891 2.0669 0.7873 23 6 11.5506 1.5076 1.2076 24 7 6.5727 -1.0519 0.3394 25 6 6.1603 -2.3889 0.7739 26 6 3.5754 -1.2069 -0.0053 27 6 2.1958 -1.1999 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3632 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 1.6522 2.1332 -0.0004 32 1 4.1117 2.1443 -0.0001 33 1 8.1068 -3.0777 -0.2301 34 1 9.1745 -2.2886 -1.4156 35 1 9.8037 -5.8841 -1.9051 36 1 11.0886 -1.1014 0.1878 37 1 10.1036 -0.0077 -0.8133 38 1 9.9036 0.3509 2.2167 39 1 10.0272 2.2521 -0.2746 40 1 9.7006 2.7655 1.4666 41 1 11.9574 1.8386 2.1631 42 1 12.2839 1.3251 0.4221 43 1 5.9592 -3.0089 -0.0996 44 1 5.2577 -2.3115 1.3802 45 1 6.9571 -2.8407 1.3647 46 1 4.1119 -2.1442 -0.0098 47 1 1.6523 -2.1332 0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646667560.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:20 Heat of formation + Delta-G solvation = 138.643131 kcal Electronic energy + Delta-G solvation = -27571.153378 eV Core-core repulsion = 23949.342426 eV Total energy + Delta-G solvation = -3621.810952 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.39993 -39.27311 -37.80818 -35.76248 -34.61830 -33.21025 -32.66249 -31.03767 -29.51427 -27.94834 -27.21936 -26.54313 -25.55548 -22.89551 -22.47837 -21.96360 -21.82279 -20.71405 -20.38884 -19.51518 -17.23116 -16.69879 -16.06300 -15.83275 -15.63013 -15.42466 -15.10784 -14.73403 -14.21851 -14.11983 -13.91158 -13.73320 -13.62811 -13.16486 -13.09827 -12.76861 -12.58931 -12.42430 -12.21469 -11.98151 -11.79886 -11.36722 -11.18558 -11.08863 -11.01547 -10.95310 -10.90548 -10.58832 -10.31849 -10.18383 -9.83805 -9.75344 -9.63031 -9.45634 -9.25143 -9.03496 -8.69286 -8.45010 -7.29421 -6.26723 -4.30869 0.90188 1.32703 2.43333 2.69109 3.21525 3.26379 3.27739 3.31611 3.83626 4.18954 4.30890 4.40092 4.54945 4.68320 4.75689 4.91580 4.94109 5.10094 5.11850 5.24188 5.31029 5.38383 5.39870 5.44853 5.51402 5.52480 5.56750 5.65654 5.71468 5.88484 5.92774 5.94301 6.03503 6.06350 6.21015 6.24131 6.34294 6.40783 6.46750 6.50526 6.56443 6.60482 6.80078 6.83980 6.90913 6.95704 7.10778 7.54278 7.64641 7.83176 8.19322 8.74815 9.25925 9.35048 10.83814 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011946 B = 0.003604 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.293745 B = 7766.674886 C = 9837.663386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.119 4.119 4 C -0.079 4.079 5 C 0.002 3.998 6 C 0.179 3.821 7 N -0.267 5.267 8 N -0.328 5.328 9 C 0.394 3.606 10 N -0.450 5.450 11 C 0.191 3.809 12 C -0.520 4.520 13 H 0.070 0.930 14 C 0.062 3.938 15 N -0.893 5.893 16 Si 0.903 3.097 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.108 3.892 21 C -0.137 4.137 22 C -0.154 4.154 23 C -0.189 4.189 24 N -0.479 5.479 25 C 0.073 3.927 26 C -0.115 4.115 27 C -0.117 4.117 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.040 0.960 34 H 0.006 0.994 35 H 0.266 0.734 36 H 0.101 0.899 37 H 0.049 0.951 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.104 0.896 46 H 0.130 0.870 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.337 7.937 4.301 16.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.137 4.137 4 C -0.099 4.099 5 C -0.001 4.001 6 C -0.084 4.084 7 N -0.108 5.108 8 N -0.175 5.175 9 C 0.039 3.961 10 N -0.172 5.172 11 C 0.068 3.932 12 C -0.558 4.558 13 H 0.088 0.912 14 C -0.141 4.141 15 N -0.532 5.532 16 Si 0.731 3.269 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.019 4.019 21 C -0.155 4.155 22 C -0.192 4.192 23 C -0.227 4.227 24 N -0.174 5.174 25 C -0.070 4.070 26 C -0.135 4.135 27 C -0.135 4.135 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.144 0.856 32 H 0.152 0.848 33 H 0.058 0.942 34 H 0.024 0.976 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.067 0.933 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.123 0.877 46 H 0.147 0.853 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.828 8.939 4.215 16.194 hybrid contribution 0.382 -1.992 -0.005 2.029 sum -12.446 6.947 4.211 14.862 Atomic orbital electron populations 1.20798 0.91189 1.02728 1.02334 1.20019 0.96108 0.93202 0.99431 1.20951 0.93684 0.97636 1.01405 1.21162 0.93726 0.97452 0.97590 1.17456 0.86144 0.94199 1.02284 1.22339 0.92513 0.85519 1.08067 1.74151 0.96714 1.22857 1.17091 1.74673 1.10790 1.09721 1.22273 1.23116 0.84747 0.91528 0.96752 1.58853 0.97115 1.06793 1.54465 1.20081 0.99532 0.82838 0.90749 1.20995 1.13024 1.02416 1.19409 0.91209 1.24964 0.96802 0.97619 0.94696 1.69933 1.38236 1.21317 1.23679 0.86465 0.82262 0.79429 0.78783 1.19973 1.21201 1.19946 1.21591 0.91693 0.92674 0.95907 1.22155 1.01363 0.91708 1.00303 1.22830 0.98082 0.96332 1.01912 1.22969 0.91683 1.05513 1.02498 1.45913 1.05702 1.12846 1.52964 1.22320 1.02719 0.80413 1.01562 1.21480 0.94554 0.97467 0.99993 1.20891 0.93534 0.97707 1.01333 0.91135 0.91562 0.91545 0.85632 0.84758 0.94176 0.97567 0.92452 0.88119 0.93308 0.88306 0.88557 0.90023 0.89540 0.89137 0.89999 0.89753 0.87707 0.85275 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 2 C -0.09 -0.86 5.89 -104.53 -0.62 -1.47 16 3 C -0.12 -1.25 9.68 -39.64 -0.38 -1.63 16 4 C -0.08 -1.03 9.70 -39.19 -0.38 -1.41 16 5 C 0.00 0.03 5.87 -104.97 -0.62 -0.59 16 6 C 0.18 3.25 7.70 -153.78 -1.18 2.07 16 7 N -0.27 -5.39 12.00 32.59 0.39 -5.00 16 8 N -0.33 -6.92 9.57 30.31 0.29 -6.63 16 9 C 0.39 8.22 6.82 -318.91 -2.17 6.05 16 10 N -0.45 -9.65 4.48 -175.89 -0.79 -10.44 16 11 C 0.19 4.64 4.44 -4.98 -0.02 4.62 16 12 C -0.52 -13.39 8.31 -34.44 -0.29 -13.68 16 13 H 0.07 1.77 7.23 -52.49 -0.38 1.39 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -24.63 13.29 55.43 0.74 -23.90 16 16 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 C 0.11 2.15 4.78 -3.83 -0.02 2.14 16 21 C -0.14 -2.38 5.06 -90.63 -0.46 -2.84 16 22 C -0.15 -2.48 9.09 -26.70 -0.24 -2.72 16 23 C -0.19 -2.77 10.25 -26.70 -0.27 -3.04 16 24 N -0.48 -8.88 3.23 -122.06 -0.39 -9.27 16 25 C 0.07 1.11 7.65 59.85 0.46 1.56 16 26 C -0.12 -1.45 8.75 -39.19 -0.34 -1.79 16 27 C -0.12 -1.23 9.68 -39.64 -0.38 -1.61 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 30 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.13 1.74 7.97 -52.49 -0.42 1.32 16 33 H 0.04 0.98 5.18 -51.93 -0.27 0.71 16 34 H 0.01 0.17 8.12 -51.93 -0.42 -0.25 16 35 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.10 2.07 6.60 -51.93 -0.34 1.73 16 37 H 0.05 1.01 7.48 -51.92 -0.39 0.62 16 38 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 39 H 0.10 1.63 8.03 -51.93 -0.42 1.22 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.08 1.21 7.59 -51.93 -0.39 0.82 16 44 H 0.08 1.02 6.50 -51.93 -0.34 0.68 16 45 H 0.10 1.72 7.30 -51.93 -0.38 1.34 16 46 H 0.13 1.53 4.94 -52.49 -0.26 1.27 16 47 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 380.80 15.07 5.74 5.74 Total: -1.00 -29.78 380.80 -12.65 -42.43 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -6.94 Total: 5.08 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -6.66 Total: -13.26 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.24 Total: -55.24 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.78 -12.65 -42.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646667560.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.074 kcal (2) G-P(sol) polarization free energy of solvation -29.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds