Wall clock time and date at job start Tue Mar 31 2020 14:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38356 * 119.85186 * 2 1 4 4 C 1.37960 * 120.14283 * 180.02562 * 3 2 1 5 5 C 1.39566 * 119.85296 * 359.97027 * 4 3 2 6 6 C 1.47850 * 120.14029 * 179.97438 * 5 4 3 7 7 N 1.31258 * 126.47807 * 342.07462 * 6 5 4 8 8 N 1.28508 * 109.94090 * 179.97438 * 7 6 5 9 9 C 1.31380 * 110.07512 * 359.76080 * 8 7 6 10 10 N 1.38410 * 126.36820 * 180.24514 * 9 8 7 11 11 C 1.46898 * 111.00022 * 236.20343 * 10 9 8 12 12 C 1.50695 * 109.47184 * 189.99737 * 11 10 9 13 13 H 1.07995 * 120.00360 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99699 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00259 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99538 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47625 * 60.00514 * 16 14 12 18 18 H 1.48511 * 109.46833 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47232 * 299.99696 * 16 14 12 20 20 C 1.46898 * 111.00025 * 0.16022 * 10 9 8 21 21 C 1.52995 * 109.47512 * 69.99753 * 20 10 9 22 22 C 1.52996 * 117.50248 * 243.74815 * 21 20 10 23 23 C 1.52994 * 117.50063 * 175.08483 * 21 20 10 24 24 N 1.36460 * 107.25996 * 0.37786 * 9 8 7 25 25 C 1.46503 * 127.16555 * 179.89812 * 24 9 8 26 26 C 1.39567 * 119.71589 * 0.26144 * 5 4 3 27 27 C 1.37967 * 119.84815 * 359.48778 * 26 5 4 28 28 H 1.09000 * 109.46689 * 90.00510 * 1 2 3 29 29 H 1.09003 * 109.46471 * 209.99963 * 1 2 3 30 30 H 1.08992 * 109.47623 * 330.00162 * 1 2 3 31 31 H 1.08000 * 119.92748 * 359.97438 * 3 2 1 32 32 H 1.07996 * 120.06991 * 180.02562 * 4 3 2 33 33 H 1.08999 * 109.46914 * 310.00457 * 11 10 9 34 34 H 1.09005 * 109.47113 * 70.00030 * 11 10 9 35 35 H 0.97000 * 119.99741 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.47038 * 190.00393 * 20 10 9 37 37 H 1.09008 * 109.46868 * 310.00106 * 20 10 9 38 38 H 1.09005 * 115.54924 * 29.42169 * 21 20 10 39 39 H 1.09003 * 117.50088 * 359.97438 * 22 21 20 40 40 H 1.09001 * 117.49799 * 145.01933 * 22 21 20 41 41 H 1.09002 * 117.50232 * 214.98214 * 23 21 20 42 42 H 1.08997 * 117.50235 * 0.02562 * 23 21 20 43 43 H 1.08994 * 109.47225 * 263.98476 * 25 24 9 44 44 H 1.09006 * 109.47200 * 143.98376 * 25 24 9 45 45 H 1.08995 * 109.46912 * 23.99023 * 25 24 9 46 46 H 1.07998 * 120.07711 * 179.72244 * 26 5 4 47 47 H 1.08001 * 119.92087 * 180.25832 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5753 1.2070 -0.0005 5 6 4.2762 0.0001 -0.0004 6 6 5.7547 0.0002 -0.0016 7 7 6.5347 1.0042 -0.3275 8 7 7.7668 0.6565 -0.2152 9 6 7.8482 -0.5892 0.1942 10 7 9.0115 -1.3008 0.4313 11 6 9.0437 -2.5366 -0.3623 12 6 10.1911 -3.3988 0.0971 13 1 10.8320 -3.0627 0.8986 14 6 10.4219 -4.6173 -0.5054 15 7 9.6411 -5.0270 -1.4811 16 14 11.8438 -5.6864 0.0645 17 1 11.6653 -6.0239 1.4996 18 1 11.8756 -6.9363 -0.7370 19 1 13.1204 -4.9496 -0.1157 20 6 10.1971 -0.4746 0.1673 21 6 10.3117 0.6105 1.2398 22 6 10.1891 2.0669 0.7873 23 6 11.5506 1.5076 1.2076 24 7 6.5727 -1.0519 0.3394 25 6 6.1603 -2.3889 0.7739 26 6 3.5754 -1.2069 -0.0053 27 6 2.1958 -1.1999 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3632 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 1.6522 2.1332 -0.0004 32 1 4.1117 2.1443 -0.0001 33 1 8.1068 -3.0777 -0.2301 34 1 9.1745 -2.2886 -1.4156 35 1 9.8037 -5.8841 -1.9051 36 1 11.0886 -1.1014 0.1878 37 1 10.1036 -0.0077 -0.8133 38 1 9.9036 0.3509 2.2167 39 1 10.0272 2.2521 -0.2746 40 1 9.7006 2.7655 1.4666 41 1 11.9574 1.8386 2.1631 42 1 12.2839 1.3251 0.4221 43 1 5.9592 -3.0089 -0.0996 44 1 5.2577 -2.3115 1.3802 45 1 6.9571 -2.8407 1.3647 46 1 4.1119 -2.1442 -0.0098 47 1 1.6523 -2.1332 0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646667560.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:20 Heat of formation + Delta-G solvation = 126.148838 kcal Electronic energy + Delta-G solvation = -27571.695171 eV Core-core repulsion = 23949.342426 eV Total energy + Delta-G solvation = -3622.352745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.90179 -40.21562 -39.33219 -37.26815 -35.99349 -34.81664 -34.02318 -31.95722 -30.89113 -29.58914 -28.65853 -27.61582 -27.21273 -24.26681 -23.81409 -23.21205 -23.02999 -22.14172 -21.64172 -20.97937 -18.87841 -18.25560 -17.46670 -17.31890 -17.06513 -16.67318 -16.33301 -16.04541 -15.69704 -15.58459 -15.10326 -14.66162 -14.58161 -14.49342 -14.39058 -14.33393 -14.01149 -13.64940 -13.32413 -13.10280 -12.99687 -12.89530 -12.73215 -12.59445 -12.30533 -12.26798 -12.21071 -12.10090 -11.92810 -11.76007 -11.43469 -11.18423 -11.11483 -11.01041 -10.66300 -10.62740 -9.93809 -9.77126 -8.80865 -8.29211 -6.40435 -0.16087 0.42898 1.03551 1.26459 1.43487 1.44816 1.53089 1.85031 2.36043 2.78143 2.83086 3.04164 3.07784 3.24606 3.62466 3.81422 3.86149 3.99985 4.01401 4.08818 4.10096 4.14768 4.18134 4.34145 4.43422 4.46044 4.47530 4.57725 4.68367 4.74104 4.84648 4.85186 4.86786 4.91955 4.94908 4.97474 5.05029 5.09856 5.13207 5.24869 5.32963 5.35091 5.38723 5.50366 5.54289 5.64428 5.69874 5.86476 5.90568 6.00107 6.42464 6.70703 7.29329 7.72464 8.81914 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011946 B = 0.003604 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.293745 B = 7766.674886 C = 9837.663386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.075 4.075 3 C -0.118 4.118 4 C -0.086 4.086 5 C -0.036 4.036 6 C 0.200 3.800 7 N -0.303 5.303 8 N -0.338 5.338 9 C 0.367 3.633 10 N -0.448 5.448 11 C 0.208 3.792 12 C -0.530 4.530 13 H 0.071 0.929 14 C 0.015 3.985 15 N -0.927 5.927 16 Si 0.970 3.030 17 H -0.265 1.265 18 H -0.284 1.284 19 H -0.268 1.268 20 C 0.114 3.886 21 C -0.153 4.153 22 C -0.152 4.152 23 C -0.160 4.160 24 N -0.482 5.482 25 C 0.072 3.928 26 C -0.117 4.117 27 C -0.118 4.118 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.153 0.847 32 H 0.126 0.874 33 H 0.036 0.964 34 H -0.035 1.035 35 H 0.268 0.732 36 H 0.089 0.911 37 H 0.031 0.969 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.111 0.889 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.119 0.881 45 H 0.090 0.910 46 H 0.132 0.868 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.204 7.866 5.568 18.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.076 4.076 3 C -0.136 4.136 4 C -0.106 4.106 5 C -0.039 4.039 6 C -0.065 4.065 7 N -0.143 5.143 8 N -0.184 5.184 9 C 0.011 3.989 10 N -0.171 5.171 11 C 0.084 3.916 12 C -0.568 4.568 13 H 0.089 0.911 14 C -0.185 4.185 15 N -0.566 5.566 16 Si 0.794 3.206 17 H -0.190 1.190 18 H -0.209 1.209 19 H -0.193 1.193 20 C -0.013 4.013 21 C -0.171 4.171 22 C -0.189 4.189 23 C -0.198 4.198 24 N -0.176 5.176 25 C -0.069 4.069 26 C -0.137 4.137 27 C -0.135 4.135 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.171 0.829 32 H 0.144 0.856 33 H 0.054 0.946 34 H -0.017 1.017 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.049 0.951 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.130 0.870 42 H 0.116 0.884 43 H 0.102 0.898 44 H 0.137 0.863 45 H 0.109 0.891 46 H 0.150 0.850 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.706 8.894 5.494 18.043 hybrid contribution 0.696 -1.905 -0.446 2.077 sum -14.010 6.989 5.048 16.450 Atomic orbital electron populations 1.20891 0.88517 1.04170 1.03436 1.20483 0.98003 0.92557 0.96556 1.21265 0.92573 0.99354 1.00396 1.21236 0.94979 0.96551 0.97842 1.17598 0.84207 0.95969 1.06129 1.23060 0.93961 0.84496 1.04945 1.74095 0.96612 1.24117 1.19456 1.74566 1.11702 1.10062 1.22119 1.23102 0.85318 0.91896 0.98629 1.58854 0.98009 1.06318 1.53915 1.19728 0.99012 0.84101 0.88758 1.21237 1.13377 1.02800 1.19383 0.91097 1.25806 0.99248 0.98844 0.94602 1.70053 1.39938 1.21810 1.24815 0.85421 0.79049 0.77513 0.78613 1.18991 1.20921 1.19332 1.21515 0.90711 0.92912 0.96114 1.21979 1.04515 0.91642 0.98992 1.22754 0.99599 0.95270 1.01250 1.23080 0.90678 1.02245 1.03771 1.46153 1.05053 1.13923 1.52509 1.22469 1.03544 0.78978 1.01920 1.21591 0.95662 0.96674 0.99779 1.21243 0.92631 0.99350 1.00313 0.90002 0.90203 0.90168 0.82911 0.85583 0.94642 1.01716 0.92337 0.89249 0.95083 0.89089 0.89950 0.89285 0.87024 0.88371 0.89787 0.86281 0.89140 0.85033 0.82929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 71.24 0.71 -0.35 16 2 C -0.08 -1.23 5.89 -19.81 -0.12 -1.34 16 3 C -0.12 -2.18 9.68 22.23 0.22 -1.97 16 4 C -0.09 -2.18 9.70 22.52 0.22 -1.96 16 5 C -0.04 -1.07 5.87 -20.09 -0.12 -1.18 16 6 C 0.20 7.48 7.70 136.22 1.05 8.53 16 7 N -0.30 -12.78 12.00 -50.80 -0.61 -13.39 16 8 N -0.34 -15.07 9.57 -58.02 -0.56 -15.62 16 9 C 0.37 16.16 6.82 260.12 1.77 17.93 16 10 N -0.45 -20.34 4.48 -710.41 -3.18 -23.52 16 11 C 0.21 10.69 4.44 85.56 0.38 11.07 16 12 C -0.53 -28.13 8.31 25.60 0.21 -27.92 16 13 H 0.07 3.68 7.23 -2.91 -0.02 3.66 16 14 C 0.01 0.79 5.46 84.66 0.46 1.25 16 15 N -0.93 -52.35 13.29 21.45 0.28 -52.07 16 16 Si 0.97 41.69 29.54 68.60 2.03 43.72 16 17 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 18 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 20 C 0.11 4.81 4.78 86.30 0.41 5.22 16 21 C -0.15 -5.44 5.06 -10.80 -0.05 -5.50 16 22 C -0.15 -4.91 9.09 30.62 0.28 -4.63 16 23 C -0.16 -4.53 10.25 30.62 0.31 -4.21 16 24 N -0.48 -18.55 3.23 -540.10 -1.74 -20.30 16 25 C 0.07 2.25 7.65 127.77 0.98 3.23 16 26 C -0.12 -2.79 8.75 22.53 0.20 -2.60 16 27 C -0.12 -2.12 9.68 22.23 0.22 -1.91 16 28 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.08 0.59 8.08 -2.39 -0.02 0.57 16 30 H 0.08 0.58 8.08 -2.39 -0.02 0.56 16 31 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 32 H 0.13 3.32 7.97 -2.91 -0.02 3.29 16 33 H 0.04 1.83 5.18 -2.39 -0.01 1.82 16 34 H -0.03 -2.04 8.12 -2.38 -0.02 -2.06 16 35 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 36 H 0.09 3.87 6.60 -2.39 -0.02 3.85 16 37 H 0.03 1.38 7.48 -2.38 -0.02 1.36 16 38 H 0.09 3.39 8.14 -2.38 -0.02 3.37 16 39 H 0.08 2.90 8.03 -2.39 -0.02 2.88 16 40 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.08 2.56 7.59 -2.39 -0.02 2.54 16 44 H 0.12 2.80 6.50 -2.38 -0.02 2.79 16 45 H 0.09 3.09 7.30 -2.39 -0.02 3.07 16 46 H 0.13 2.98 4.94 -2.91 -0.01 2.96 16 47 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -67.33 380.80 4.32 -63.00 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.97 Total: 24.52 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 7.13 Total: -6.35 kcal Atomic # 7 Polarization: -119.08 SS G_CDS: -5.81 Total: -124.89 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -67.33 4.32 -63.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646667560.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.152 kcal (2) G-P(sol) polarization free energy of solvation -67.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds