Wall clock time and date at job start Tue Mar 31 2020 15:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47208 * 2 1 4 4 H 1.08999 * 110.41924 * 57.31435 * 3 2 1 5 5 C 1.54907 * 110.37474 * 179.62620 * 3 2 1 6 6 C 1.55142 * 101.65159 * 155.89979 * 5 3 2 7 7 C 1.54314 * 103.01929 * 324.34560 * 6 5 3 8 8 N 1.47442 * 107.23311 * 22.28520 * 7 6 5 9 9 C 1.38405 * 110.99863 * 123.25792 * 8 7 6 10 10 N 1.31380 * 126.36907 * 239.90075 * 9 8 7 11 11 N 1.28514 * 110.07309 * 179.97438 * 10 9 8 12 12 C 1.31246 * 109.93815 * 359.97438 * 11 10 9 13 13 C 1.47872 * 126.47180 * 179.97438 * 12 11 10 14 14 C 1.39955 * 120.02213 * 160.81299 * 13 12 11 15 15 C 1.38333 * 120.35228 * 180.02562 * 14 13 12 16 16 C 1.37748 * 120.40571 * 359.97438 * 15 14 13 17 17 C 1.40784 * 120.03691 * 359.97438 * 16 15 14 18 18 C 1.41430 * 120.17318 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00663 * 327.48926 * 18 17 16 20 20 C 1.39922 * 119.99799 * 147.49292 * 18 17 16 21 21 N 1.30838 * 120.00134 * 359.75060 * 20 18 17 22 22 Si 1.86800 * 120.00086 * 179.74548 * 20 18 17 23 23 H 1.48505 * 109.47152 * 90.00145 * 22 20 18 24 24 H 1.48506 * 109.47072 * 209.99696 * 22 20 18 25 25 H 1.48497 * 109.47230 * 329.99974 * 22 20 18 26 26 C 1.38962 * 120.02429 * 341.07900 * 13 12 11 27 27 N 1.36460 * 126.37406 * 60.17044 * 9 8 7 28 28 C 1.46504 * 127.16423 * 0.03357 * 27 9 8 29 29 H 1.09002 * 109.47068 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47020 * 300.00191 * 1 2 3 31 31 H 1.08994 * 109.46954 * 59.99939 * 1 2 3 32 32 H 1.09002 * 109.47020 * 239.99809 * 2 1 3 33 33 H 1.09003 * 109.46970 * 120.00182 * 2 1 3 34 34 H 1.08997 * 110.99219 * 37.80524 * 5 3 2 35 35 H 1.09003 * 111.02360 * 274.00621 * 5 3 2 36 36 H 1.09004 * 110.70424 * 205.96223 * 6 5 3 37 37 H 1.09001 * 110.85677 * 82.80010 * 6 5 3 38 38 H 1.08998 * 109.88786 * 262.88124 * 7 6 5 39 39 H 1.08999 * 110.01949 * 141.76967 * 7 6 5 40 40 H 1.07993 * 119.82411 * 0.02562 * 14 13 12 41 41 H 1.08004 * 119.79673 * 179.97438 * 15 14 13 42 42 H 1.08003 * 119.98401 * 180.02562 * 16 15 14 43 43 H 0.96999 * 120.00390 * 180.02562 * 21 20 18 44 44 H 1.08001 * 120.19912 * 359.97438 * 26 13 12 45 45 H 1.09008 * 109.47152 * 269.21539 * 28 27 9 46 46 H 1.08999 * 109.47106 * 29.21037 * 28 27 9 47 47 H 1.09001 * 109.47288 * 149.21611 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6467 1.9849 0.8597 5 6 3.5889 1.4669 0.0095 6 6 3.8842 2.8573 -0.6122 7 6 2.7616 3.0154 -1.6592 8 7 1.6594 2.1229 -1.2561 9 6 0.4804 2.8306 -1.0992 10 7 -0.2303 2.9262 0.0016 11 7 -1.2648 3.6605 -0.2035 12 6 -1.2772 4.0788 -1.4475 13 6 -2.2999 4.9439 -2.0739 14 6 -2.0047 5.6349 -3.2546 15 6 -2.9561 6.4464 -3.8461 16 6 -4.2046 6.5834 -3.2805 17 6 -4.5198 5.8951 -2.0935 18 6 -5.8010 6.0332 -1.5106 19 1 -6.3364 6.9671 -1.5979 20 6 -6.3750 4.9598 -0.8205 21 7 -5.7286 3.8268 -0.7187 22 14 -8.0641 5.1444 -0.0445 23 1 -9.1058 4.7478 -1.0259 24 1 -8.1561 4.2726 1.1543 25 1 -8.2734 6.5592 0.3550 26 6 -3.5529 5.0756 -1.4876 27 7 -0.1629 3.5547 -2.0604 28 6 0.2494 3.7387 -3.4542 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9958 0.6677 -0.6101 35 1 3.9748 1.4042 1.0270 36 1 4.8628 2.8649 -1.0922 37 1 3.8205 3.6412 0.1425 38 1 3.1300 2.7282 -2.6440 39 1 2.4138 4.0482 -1.6803 40 1 -1.0290 5.5341 -3.7063 41 1 -2.7185 6.9759 -4.7570 42 1 -4.9424 7.2184 -3.7483 43 1 -6.1267 3.0825 -0.2407 44 1 -3.7836 4.5473 -0.5744 45 1 0.8772 4.6263 -3.5332 46 1 0.8116 2.8655 -3.7850 47 1 -0.6337 3.8614 -4.0812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646675214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:36 Heat of formation + Delta-G solvation = 107.610256 kcal Electronic energy + Delta-G solvation = -28080.359586 eV Core-core repulsion = 24457.202948 eV Total energy + Delta-G solvation = -3623.156638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.44093 -39.35661 -37.52905 -34.80038 -33.68990 -33.19559 -32.54309 -30.51794 -29.63432 -28.17852 -27.45103 -27.24221 -25.34054 -23.46175 -22.68002 -21.64650 -21.16838 -20.80676 -19.92770 -19.27138 -17.59682 -17.12927 -16.46987 -15.72439 -15.41147 -15.29519 -14.86352 -14.59430 -14.33646 -13.80237 -13.33158 -13.19459 -13.12818 -13.08623 -12.96708 -12.67929 -12.61683 -12.34390 -12.27325 -11.73855 -11.56708 -11.29363 -11.18567 -11.13760 -11.08147 -10.82932 -10.70935 -10.63553 -10.56830 -10.50251 -10.14953 -9.81362 -9.71767 -9.68769 -9.39563 -9.19150 -8.33111 -7.42176 -7.13355 -6.64246 -4.44066 1.85553 2.58737 2.72019 2.88125 3.11268 3.14804 3.15230 3.64942 3.82139 3.97151 4.27748 4.41203 4.66154 4.70010 4.87298 4.94991 5.08802 5.16724 5.22288 5.26509 5.31887 5.42306 5.46268 5.53095 5.57069 5.59652 5.63545 5.67361 5.80995 5.87595 5.96731 6.10021 6.13647 6.13837 6.23518 6.31299 6.39361 6.62675 6.66816 6.69913 6.96475 7.01531 7.09853 7.27000 7.43762 7.52202 7.68027 7.87918 7.98826 8.21867 8.53428 8.85054 8.86824 9.34204 10.26316 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016878 B = 0.003454 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.593633 B = 8104.825058 C = 9347.893525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 C 0.083 3.917 4 H 0.088 0.912 5 C -0.125 4.125 6 C -0.139 4.139 7 C 0.043 3.957 8 N -0.440 5.440 9 C 0.332 3.668 10 N -0.318 5.318 11 N -0.278 5.278 12 C 0.257 3.743 13 C -0.026 4.026 14 C -0.230 4.230 15 C -0.098 4.098 16 C -0.207 4.207 17 C 0.102 3.898 18 C -0.461 4.461 19 H 0.079 0.921 20 C 0.070 3.930 21 N -0.800 5.800 22 Si 0.916 3.084 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.262 1.262 26 C -0.095 4.095 27 N -0.483 5.483 28 C 0.076 3.924 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.282 0.718 44 H 0.143 0.857 45 H 0.072 0.928 46 H 0.084 0.916 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.551 -4.849 -2.457 17.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.139 4.139 3 C -0.024 4.024 4 H 0.106 0.894 5 C -0.163 4.163 6 C -0.177 4.177 7 C -0.085 4.085 8 N -0.164 5.164 9 C -0.024 4.024 10 N -0.163 5.163 11 N -0.117 5.117 12 C -0.007 4.007 13 C -0.029 4.029 14 C -0.250 4.250 15 C -0.116 4.116 16 C -0.228 4.228 17 C 0.100 3.900 18 C -0.491 4.491 19 H 0.097 0.903 20 C -0.147 4.147 21 N -0.426 5.426 22 Si 0.740 3.260 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.186 1.186 26 C -0.116 4.116 27 N -0.178 5.178 28 C -0.067 4.067 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.093 0.907 44 H 0.161 0.839 45 H 0.091 0.909 46 H 0.103 0.897 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 16.056 -5.698 -1.296 17.086 hybrid contribution -0.221 0.652 -0.784 1.044 sum 15.835 -5.046 -2.081 16.749 Atomic orbital electron populations 1.21725 0.94881 1.00489 1.03140 1.21423 0.96951 0.94050 1.01504 1.22723 0.94043 0.95813 0.89855 0.89388 1.22789 0.94720 0.97110 1.01697 1.22751 0.98655 0.97948 0.98395 1.22953 0.90253 0.95454 0.99803 1.60165 0.98957 1.24497 1.32783 1.22426 0.96346 0.97217 0.86404 1.74500 1.04025 1.18279 1.19463 1.74407 1.13822 1.10860 1.12609 1.23293 0.88398 0.99055 0.89911 1.17392 0.91484 0.97865 0.96153 1.20521 0.99241 1.06104 0.99178 1.20386 0.94096 0.98657 0.98502 1.21216 0.96546 1.07214 0.97789 1.17600 0.92577 0.90080 0.89785 1.19545 1.00801 0.99180 1.29588 0.90289 1.25912 0.99874 0.94699 0.94189 1.69726 1.37464 1.02537 1.32823 0.86190 0.81433 0.79400 0.78946 1.19571 1.20119 1.18614 1.21772 0.88949 1.00489 1.00428 1.46038 1.20533 1.40107 1.11081 1.22205 1.02672 1.02550 0.79262 0.93717 0.91722 0.92886 0.91830 0.91521 0.90316 0.90121 0.90198 0.91027 0.89583 0.92275 0.88835 0.88838 0.88521 0.90706 0.83899 0.90929 0.89720 0.88053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.65 37.16 0.32 -1.82 16 2 C -0.10 -1.19 5.66 -26.73 -0.15 -1.34 16 3 C 0.08 1.01 2.43 -66.19 -0.16 0.85 16 4 H 0.09 1.29 6.90 -51.93 -0.36 0.93 16 5 C -0.12 -1.09 6.50 -24.59 -0.16 -1.25 16 6 C -0.14 -1.20 6.94 -24.91 -0.17 -1.37 16 7 C 0.04 0.46 6.02 -2.84 -0.02 0.44 16 8 N -0.44 -5.98 4.72 -163.87 -0.77 -6.75 16 9 C 0.33 5.84 5.24 -318.92 -1.67 4.16 16 10 N -0.32 -6.59 9.18 30.31 0.28 -6.31 16 11 N -0.28 -6.60 12.00 32.59 0.39 -6.21 16 12 C 0.26 5.73 7.69 -153.79 -1.18 4.54 16 13 C -0.03 -0.61 5.86 -105.04 -0.62 -1.22 16 14 C -0.23 -4.77 8.67 -38.90 -0.34 -5.11 16 15 C -0.10 -2.05 10.01 -39.73 -0.40 -2.45 16 16 C -0.21 -4.85 9.78 -38.80 -0.38 -5.23 16 17 C 0.10 2.67 5.55 -106.87 -0.59 2.07 16 18 C -0.46 -12.07 9.05 -37.74 -0.34 -12.42 16 19 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 20 C 0.07 1.77 5.39 -17.34 -0.09 1.68 16 21 N -0.80 -21.21 10.63 55.55 0.59 -20.62 16 22 Si 0.92 19.03 29.56 -169.99 -5.02 14.00 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 25 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 26 C -0.09 -2.49 8.30 -38.47 -0.32 -2.81 16 27 N -0.48 -8.70 3.18 -122.06 -0.39 -9.08 16 28 C 0.08 1.01 8.47 59.85 0.51 1.52 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 1.07 7.72 -51.93 -0.40 0.67 16 31 H 0.05 0.93 6.50 -51.93 -0.34 0.60 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.61 8.06 -51.93 -0.42 0.19 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.71 7.30 -51.93 -0.38 0.33 16 40 H 0.09 1.63 5.06 -52.49 -0.27 1.37 16 41 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 42 H 0.10 2.10 8.06 -52.48 -0.42 1.67 16 43 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 44 H 0.14 4.08 6.05 -52.49 -0.32 3.76 16 45 H 0.07 0.81 7.96 -51.92 -0.41 0.40 16 46 H 0.08 0.94 8.12 -51.93 -0.42 0.52 16 47 H 0.10 1.41 6.20 -51.93 -0.32 1.08 16 LS Contribution 369.93 15.07 5.57 5.57 Total: -1.00 -29.97 369.93 -12.10 -42.07 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -6.99 Total: 7.07 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -5.76 Total: -19.74 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.10 Total: -48.97 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.97 -12.10 -42.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646675214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.680 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds