Wall clock time and date at job start Tue Mar 31 2020 15:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47208 * 2 1 4 4 H 1.08999 * 110.41924 * 57.31435 * 3 2 1 5 5 C 1.54907 * 110.37474 * 179.62620 * 3 2 1 6 6 C 1.55142 * 101.65159 * 155.89979 * 5 3 2 7 7 C 1.54314 * 103.01929 * 324.34560 * 6 5 3 8 8 N 1.47442 * 107.23311 * 22.28520 * 7 6 5 9 9 C 1.38405 * 110.99863 * 123.25792 * 8 7 6 10 10 N 1.31380 * 126.36907 * 239.90075 * 9 8 7 11 11 N 1.28514 * 110.07309 * 179.97438 * 10 9 8 12 12 C 1.31246 * 109.93815 * 359.97438 * 11 10 9 13 13 C 1.47872 * 126.47180 * 179.97438 * 12 11 10 14 14 C 1.39955 * 120.02213 * 160.81299 * 13 12 11 15 15 C 1.38333 * 120.35228 * 180.02562 * 14 13 12 16 16 C 1.37748 * 120.40571 * 359.97438 * 15 14 13 17 17 C 1.40784 * 120.03691 * 359.97438 * 16 15 14 18 18 C 1.41430 * 120.17318 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00663 * 327.48926 * 18 17 16 20 20 C 1.39922 * 119.99799 * 147.49292 * 18 17 16 21 21 N 1.30838 * 120.00134 * 359.75060 * 20 18 17 22 22 Si 1.86800 * 120.00086 * 179.74548 * 20 18 17 23 23 H 1.48505 * 109.47152 * 90.00145 * 22 20 18 24 24 H 1.48506 * 109.47072 * 209.99696 * 22 20 18 25 25 H 1.48497 * 109.47230 * 329.99974 * 22 20 18 26 26 C 1.38962 * 120.02429 * 341.07900 * 13 12 11 27 27 N 1.36460 * 126.37406 * 60.17044 * 9 8 7 28 28 C 1.46504 * 127.16423 * 0.03357 * 27 9 8 29 29 H 1.09002 * 109.47068 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47020 * 300.00191 * 1 2 3 31 31 H 1.08994 * 109.46954 * 59.99939 * 1 2 3 32 32 H 1.09002 * 109.47020 * 239.99809 * 2 1 3 33 33 H 1.09003 * 109.46970 * 120.00182 * 2 1 3 34 34 H 1.08997 * 110.99219 * 37.80524 * 5 3 2 35 35 H 1.09003 * 111.02360 * 274.00621 * 5 3 2 36 36 H 1.09004 * 110.70424 * 205.96223 * 6 5 3 37 37 H 1.09001 * 110.85677 * 82.80010 * 6 5 3 38 38 H 1.08998 * 109.88786 * 262.88124 * 7 6 5 39 39 H 1.08999 * 110.01949 * 141.76967 * 7 6 5 40 40 H 1.07993 * 119.82411 * 0.02562 * 14 13 12 41 41 H 1.08004 * 119.79673 * 179.97438 * 15 14 13 42 42 H 1.08003 * 119.98401 * 180.02562 * 16 15 14 43 43 H 0.96999 * 120.00390 * 180.02562 * 21 20 18 44 44 H 1.08001 * 120.19912 * 359.97438 * 26 13 12 45 45 H 1.09008 * 109.47152 * 269.21539 * 28 27 9 46 46 H 1.08999 * 109.47106 * 29.21037 * 28 27 9 47 47 H 1.09001 * 109.47288 * 149.21611 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6467 1.9849 0.8597 5 6 3.5889 1.4669 0.0095 6 6 3.8842 2.8573 -0.6122 7 6 2.7616 3.0154 -1.6592 8 7 1.6594 2.1229 -1.2561 9 6 0.4804 2.8306 -1.0992 10 7 -0.2303 2.9262 0.0016 11 7 -1.2648 3.6605 -0.2035 12 6 -1.2772 4.0788 -1.4475 13 6 -2.2999 4.9439 -2.0739 14 6 -2.0047 5.6349 -3.2546 15 6 -2.9561 6.4464 -3.8461 16 6 -4.2046 6.5834 -3.2805 17 6 -4.5198 5.8951 -2.0935 18 6 -5.8010 6.0332 -1.5106 19 1 -6.3364 6.9671 -1.5979 20 6 -6.3750 4.9598 -0.8205 21 7 -5.7286 3.8268 -0.7187 22 14 -8.0641 5.1444 -0.0445 23 1 -9.1058 4.7478 -1.0259 24 1 -8.1561 4.2726 1.1543 25 1 -8.2734 6.5592 0.3550 26 6 -3.5529 5.0756 -1.4876 27 7 -0.1629 3.5547 -2.0604 28 6 0.2494 3.7387 -3.4542 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9958 0.6677 -0.6101 35 1 3.9748 1.4042 1.0270 36 1 4.8628 2.8649 -1.0922 37 1 3.8205 3.6412 0.1425 38 1 3.1300 2.7282 -2.6440 39 1 2.4138 4.0482 -1.6803 40 1 -1.0290 5.5341 -3.7063 41 1 -2.7185 6.9759 -4.7570 42 1 -4.9424 7.2184 -3.7483 43 1 -6.1267 3.0825 -0.2407 44 1 -3.7836 4.5473 -0.5744 45 1 0.8772 4.6263 -3.5332 46 1 0.8116 2.8655 -3.7850 47 1 -0.6337 3.8614 -4.0812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646675214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:35 Heat of formation + Delta-G solvation = 92.632019 kcal Electronic energy + Delta-G solvation = -28081.009091 eV Core-core repulsion = 24457.202948 eV Total energy + Delta-G solvation = -3623.806143 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.91997 -40.38102 -39.31166 -36.23761 -35.46563 -34.23882 -33.79499 -32.01898 -31.45790 -29.24010 -28.89449 -28.47215 -27.22046 -24.54547 -24.23929 -23.00897 -22.38704 -22.19835 -21.37600 -20.51932 -19.26169 -18.48141 -17.66787 -17.21330 -17.07673 -16.57008 -16.43260 -16.01962 -15.50997 -15.11084 -14.71668 -14.56498 -14.37090 -14.24328 -14.13031 -14.00364 -13.95464 -13.69267 -13.54292 -13.21202 -12.87062 -12.79260 -12.63528 -12.50224 -12.35043 -12.22973 -12.16945 -11.84927 -11.71936 -11.59320 -11.54637 -11.47763 -11.39294 -11.16435 -11.10091 -10.76040 -9.78270 -9.28218 -8.81029 -8.50409 -6.41454 0.22114 1.01178 1.20266 1.27496 1.37747 1.48405 1.52125 1.99734 2.22365 2.67671 2.80621 3.37487 3.52402 3.58955 3.67735 3.76563 3.97458 4.01399 4.15899 4.24072 4.25394 4.31737 4.37945 4.42321 4.52583 4.55818 4.62268 4.66239 4.69956 4.85519 4.88555 4.93981 5.00265 5.02478 5.04773 5.08463 5.13661 5.20731 5.26603 5.30963 5.39693 5.41848 5.47841 5.60722 5.70195 5.87753 6.02125 6.12265 6.21164 6.33503 6.63446 6.93236 6.97745 7.79130 8.40193 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016878 B = 0.003454 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.593633 B = 8104.825058 C = 9347.893525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 C 0.073 3.927 4 H 0.057 0.943 5 C -0.112 4.112 6 C -0.133 4.133 7 C 0.037 3.963 8 N -0.436 5.436 9 C 0.356 3.644 10 N -0.351 5.351 11 N -0.322 5.322 12 C 0.231 3.769 13 C -0.031 4.031 14 C -0.211 4.211 15 C -0.093 4.093 16 C -0.214 4.214 17 C 0.070 3.930 18 C -0.497 4.497 19 H 0.081 0.919 20 C 0.025 3.975 21 N -0.840 5.840 22 Si 0.987 3.013 23 H -0.260 1.260 24 H -0.275 1.275 25 H -0.255 1.255 26 C -0.131 4.131 27 N -0.479 5.479 28 C 0.066 3.934 29 H 0.057 0.943 30 H 0.036 0.964 31 H 0.018 0.982 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.060 0.940 38 H 0.117 0.883 39 H 0.045 0.955 40 H 0.136 0.864 41 H 0.141 0.859 42 H 0.110 0.890 43 H 0.281 0.719 44 H 0.108 0.892 45 H 0.102 0.898 46 H 0.111 0.889 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.997 -5.104 -4.742 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.132 4.132 3 C -0.034 4.034 4 H 0.075 0.925 5 C -0.150 4.150 6 C -0.172 4.172 7 C -0.089 4.089 8 N -0.161 5.161 9 C -0.001 4.001 10 N -0.196 5.196 11 N -0.161 5.161 12 C -0.035 4.035 13 C -0.034 4.034 14 C -0.232 4.232 15 C -0.111 4.111 16 C -0.234 4.234 17 C 0.068 3.932 18 C -0.528 4.528 19 H 0.099 0.901 20 C -0.187 4.187 21 N -0.468 5.468 22 Si 0.808 3.192 23 H -0.185 1.185 24 H -0.200 1.200 25 H -0.178 1.178 26 C -0.153 4.153 27 N -0.173 5.173 28 C -0.075 4.075 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.037 0.963 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.130 0.870 37 H 0.079 0.921 38 H 0.135 0.865 39 H 0.063 0.937 40 H 0.153 0.847 41 H 0.158 0.842 42 H 0.128 0.872 43 H 0.091 0.909 44 H 0.125 0.875 45 H 0.120 0.880 46 H 0.130 0.870 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 19.536 -5.938 -3.611 20.736 hybrid contribution -1.027 0.669 -0.181 1.238 sum 18.510 -5.270 -3.792 19.615 Atomic orbital electron populations 1.21646 0.97730 1.00262 1.00026 1.21427 0.94111 0.94263 1.03405 1.22861 0.97005 0.95360 0.88194 0.92477 1.22787 0.91153 0.97866 1.03224 1.22769 0.99300 0.97449 0.97650 1.23178 0.89584 0.94146 1.01992 1.60417 0.98348 1.24176 1.33146 1.22879 0.96756 0.95043 0.85402 1.74420 1.04308 1.19441 1.21443 1.74294 1.15430 1.12040 1.14369 1.23056 0.89927 1.00314 0.90158 1.17613 0.90837 0.98004 0.96922 1.21010 1.00940 1.03817 0.97394 1.20869 0.92728 0.97981 0.99544 1.21494 0.98198 1.06684 0.97023 1.17936 0.92813 0.91191 0.91260 1.19823 1.01599 0.99798 1.31553 0.90051 1.26804 1.03641 0.94007 0.94278 1.69880 1.39222 1.03391 1.34268 0.85130 0.76625 0.79506 0.77983 1.18505 1.20017 1.17835 1.21528 0.90888 1.02398 1.00445 1.46181 1.19149 1.39338 1.12648 1.22589 1.03210 1.05281 0.76443 0.92440 0.94507 0.96274 0.90191 0.89142 0.88157 0.88641 0.86963 0.92130 0.86531 0.93664 0.84662 0.84176 0.87186 0.90853 0.87459 0.88008 0.87037 0.88474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.23 8.65 71.98 0.62 -3.60 16 2 C -0.09 -2.04 5.66 30.59 0.17 -1.87 16 3 C 0.07 1.67 2.43 45.38 0.11 1.78 16 4 H 0.06 1.70 6.90 -2.39 -0.02 1.68 16 5 C -0.11 -1.51 6.50 31.98 0.21 -1.31 16 6 C -0.13 -1.77 6.94 31.77 0.22 -1.55 16 7 C 0.04 0.66 6.02 86.65 0.52 1.18 16 8 N -0.44 -11.03 4.72 -672.37 -3.17 -14.20 16 9 C 0.36 12.54 5.24 260.13 1.36 13.91 16 10 N -0.35 -15.39 9.18 -58.03 -0.53 -15.93 16 11 N -0.32 -16.40 12.00 -50.80 -0.61 -17.01 16 12 C 0.23 10.69 7.69 136.23 1.05 11.74 16 13 C -0.03 -1.50 5.86 -20.14 -0.12 -1.61 16 14 C -0.21 -8.42 8.67 22.71 0.20 -8.23 16 15 C -0.09 -3.68 10.01 22.18 0.22 -3.46 16 16 C -0.21 -10.00 9.78 22.78 0.22 -9.77 16 17 C 0.07 3.85 5.55 -21.32 -0.12 3.73 16 18 C -0.50 -27.51 9.05 23.46 0.21 -27.30 16 19 H 0.08 4.25 7.85 -2.91 -0.02 4.23 16 20 C 0.02 1.33 5.39 85.25 0.46 1.79 16 21 N -0.84 -48.05 10.63 21.82 0.23 -47.81 16 22 Si 0.99 40.89 29.56 68.60 2.03 42.92 16 23 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 24 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 26 C -0.13 -7.35 8.30 22.99 0.19 -7.16 16 27 N -0.48 -17.01 3.18 -540.08 -1.72 -18.73 16 28 C 0.07 1.54 8.47 127.77 1.08 2.62 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.04 1.29 7.72 -2.39 -0.02 1.27 16 31 H 0.02 0.68 6.50 -2.39 -0.02 0.66 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.10 0.99 8.06 -2.39 -0.02 0.98 16 35 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.04 0.95 7.30 -2.39 -0.02 0.94 16 40 H 0.14 4.20 5.06 -2.91 -0.01 4.19 16 41 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 42 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 43 H 0.28 14.98 8.30 -92.71 -0.77 14.22 16 44 H 0.11 6.75 6.05 -2.91 -0.02 6.73 16 45 H 0.10 1.83 7.96 -2.38 -0.02 1.81 16 46 H 0.11 2.04 8.12 -2.39 -0.02 2.02 16 47 H 0.10 2.40 6.20 -2.39 -0.01 2.38 16 Total: -1.00 -74.38 369.93 3.82 -70.56 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.97 Total: 29.31 kcal Atomic # 6 Polarization: -35.73 SS G_CDS: 6.62 Total: -29.11 kcal Atomic # 7 Polarization: -107.87 SS G_CDS: -5.80 Total: -113.67 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -74.38 3.82 -70.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646675214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.193 kcal (2) G-P(sol) polarization free energy of solvation -74.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds