Wall clock time and date at job start Tue Mar 31 2020 15:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47071 * 2 1 4 4 H 1.09004 * 110.72372 * 301.90092 * 3 2 1 5 5 C 1.54936 * 110.66849 * 178.80677 * 3 2 1 6 6 C 1.54606 * 102.92056 * 204.14695 * 5 3 2 7 7 C 1.53992 * 105.13732 * 21.95807 * 6 5 3 8 8 N 1.47900 * 107.05953 * 1.22271 * 7 6 5 9 9 C 1.38405 * 110.99787 * 214.15489 * 8 7 6 10 10 N 1.31379 * 126.37056 * 232.54897 * 9 8 7 11 11 N 1.28510 * 110.07847 * 179.97438 * 10 9 8 12 12 C 1.31258 * 109.93261 * 359.97438 * 11 10 9 13 13 C 1.47877 * 126.46977 * 180.02562 * 12 11 10 14 14 C 1.39952 * 120.02331 * 162.60948 * 13 12 11 15 15 C 1.38332 * 120.35730 * 179.97438 * 14 13 12 16 16 C 1.37755 * 120.39894 * 0.02562 * 15 14 13 17 17 C 1.40786 * 120.04105 * 359.97438 * 16 15 14 18 18 C 1.41429 * 120.17819 * 180.02562 * 17 16 15 19 19 H 1.07992 * 120.00193 * 147.98747 * 18 17 16 20 20 C 1.39925 * 119.99926 * 327.98790 * 18 17 16 21 21 N 1.30831 * 120.00034 * 162.19609 * 20 18 17 22 22 Si 1.86804 * 119.99926 * 342.19891 * 20 18 17 23 23 H 1.48501 * 109.47213 * 95.28778 * 22 20 18 24 24 H 1.48493 * 109.47010 * 215.29011 * 22 20 18 25 25 H 1.48503 * 109.46997 * 335.28821 * 22 20 18 26 26 C 1.38964 * 120.02034 * 342.33076 * 13 12 11 27 27 N 1.36468 * 126.37210 * 52.53107 * 9 8 7 28 28 C 1.46500 * 127.16152 * 359.97438 * 27 9 8 29 29 H 1.08997 * 109.47079 * 300.00162 * 1 2 3 30 30 H 1.09001 * 109.46741 * 60.00701 * 1 2 3 31 31 H 1.08995 * 109.46558 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47717 * 240.00080 * 2 1 3 33 33 H 1.09001 * 109.47483 * 119.99245 * 2 1 3 34 34 H 1.09001 * 110.72503 * 85.79504 * 5 3 2 35 35 H 1.08995 * 110.88032 * 322.57755 * 5 3 2 36 36 H 1.08993 * 110.30951 * 263.04302 * 6 5 3 37 37 H 1.08995 * 110.38741 * 140.91621 * 6 5 3 38 38 H 1.08997 * 109.91786 * 241.86946 * 7 6 5 39 39 H 1.08998 * 109.91610 * 120.57567 * 7 6 5 40 40 H 1.07997 * 119.82223 * 359.97438 * 14 13 12 41 41 H 1.07999 * 119.79883 * 180.02562 * 15 14 13 42 42 H 1.08002 * 119.98041 * 180.02562 * 16 15 14 43 43 H 0.97001 * 119.99742 * 179.97438 * 21 20 18 44 44 H 1.07993 * 120.20131 * 0.02562 * 26 13 12 45 45 H 1.09004 * 109.46425 * 264.35992 * 28 27 9 46 46 H 1.08995 * 109.47315 * 24.36057 * 28 27 9 47 47 H 1.09001 * 109.47136 * 144.36557 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6606 1.9858 -0.8655 5 6 3.5887 1.4750 0.0302 6 6 3.8935 2.8613 0.6431 7 6 2.6161 3.2519 1.4091 8 7 1.6610 2.1326 1.2594 9 6 0.3585 2.5969 1.1981 10 7 -0.6479 2.1940 1.9402 11 7 -1.7154 2.8344 1.6213 12 6 -1.4552 3.6855 0.6565 13 6 -2.4171 4.6066 0.0138 14 6 -1.9523 5.6969 -0.7305 15 6 -2.8459 6.5626 -1.3351 16 6 -4.2031 6.3619 -1.2112 17 6 -4.6891 5.2705 -0.4664 18 6 -6.0820 5.0615 -0.3378 19 1 -6.4719 4.0579 -0.2539 20 6 -6.9548 6.1550 -0.3193 21 7 -8.2303 5.9778 -0.5503 22 14 -6.2988 7.8677 0.0353 23 1 -6.0248 8.5678 -1.2453 24 1 -7.3070 8.6329 0.8120 25 1 -5.0431 7.7639 0.8212 26 6 -3.7831 4.3869 0.1435 27 7 -0.1191 3.5585 0.3557 28 6 0.6349 4.3020 -0.6567 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3632 -1.0276 0.0005 32 1 1.8935 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.9958 1.4013 -0.9783 35 1 3.9817 0.6789 0.6624 36 1 4.0990 3.5862 -0.1444 37 1 4.7398 2.7963 1.3270 38 1 2.1917 4.1615 0.9841 39 1 2.8472 3.4043 2.4634 40 1 -0.8902 5.8633 -0.8334 41 1 -2.4773 7.4008 -1.9077 42 1 -4.8948 7.0418 -1.6864 43 1 -8.8354 6.7359 -0.5371 44 1 -4.1461 3.5445 0.7135 45 1 0.9610 5.2548 -0.2396 46 1 1.5058 3.7212 -0.9604 47 1 -0.0012 4.4832 -1.5231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646675215.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:39 Heat of formation + Delta-G solvation = 117.672657 kcal Electronic energy + Delta-G solvation = -28164.335988 eV Core-core repulsion = 24541.615689 eV Total energy + Delta-G solvation = -3622.720300 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.82399 -39.60673 -37.88764 -34.98128 -33.79672 -33.45538 -32.76049 -30.83136 -30.45494 -28.30823 -27.90142 -27.63688 -25.35035 -23.66308 -22.82309 -21.80428 -21.31081 -20.84466 -20.36444 -20.17718 -17.81936 -17.05270 -16.55410 -16.04468 -15.93807 -15.59487 -15.24454 -14.87123 -14.45627 -13.85686 -13.57513 -13.55024 -13.43810 -13.22224 -13.15595 -12.96203 -12.78552 -12.71285 -12.48509 -12.17221 -11.81482 -11.57481 -11.46006 -11.26523 -11.07134 -10.98617 -10.92104 -10.88905 -10.79481 -10.53905 -10.19623 -10.00952 -9.94431 -9.72185 -9.33974 -9.07252 -8.94844 -7.83713 -7.48988 -7.01842 -4.58487 1.49640 2.39044 2.46268 2.54847 3.04096 3.16189 3.24004 3.27982 3.37240 3.91997 4.10190 4.31828 4.36762 4.40289 4.48319 4.71492 4.78675 4.89436 4.90842 4.98509 5.14574 5.16609 5.21623 5.28299 5.34657 5.43042 5.46167 5.50239 5.63836 5.70646 5.76089 5.84993 5.92118 5.96307 5.98721 6.05478 6.09636 6.32150 6.37465 6.50849 6.56200 6.63448 6.77346 6.93868 7.22134 7.27621 7.38791 7.50000 7.72987 7.90008 8.26514 8.49571 8.68992 9.07335 10.00327 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.024116 B = 0.003133 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.778374 B = 8935.052630 C = 9476.127249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.103 4.103 3 C 0.062 3.938 4 H 0.060 0.940 5 C -0.118 4.118 6 C -0.130 4.130 7 C 0.029 3.971 8 N -0.415 5.415 9 C 0.322 3.678 10 N -0.262 5.262 11 N -0.284 5.284 12 C 0.258 3.742 13 C -0.002 4.002 14 C -0.240 4.240 15 C -0.076 4.076 16 C -0.225 4.225 17 C 0.089 3.911 18 C -0.442 4.442 19 H 0.095 0.905 20 C 0.085 3.915 21 N -0.803 5.803 22 Si 0.909 3.091 23 H -0.269 1.269 24 H -0.288 1.288 25 H -0.244 1.244 26 C -0.146 4.146 27 N -0.500 5.500 28 C 0.064 3.936 29 H 0.089 0.911 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.287 0.713 44 H 0.117 0.883 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.320 -3.185 -2.427 22.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.140 4.140 3 C -0.046 4.046 4 H 0.078 0.922 5 C -0.156 4.156 6 C -0.168 4.168 7 C -0.099 4.099 8 N -0.139 5.139 9 C -0.032 4.032 10 N -0.105 5.105 11 N -0.124 5.124 12 C -0.006 4.006 13 C -0.005 4.005 14 C -0.261 4.261 15 C -0.094 4.094 16 C -0.245 4.245 17 C 0.086 3.914 18 C -0.470 4.470 19 H 0.113 0.887 20 C -0.135 4.135 21 N -0.427 5.427 22 Si 0.734 3.266 23 H -0.195 1.195 24 H -0.215 1.215 25 H -0.167 1.167 26 C -0.168 4.168 27 N -0.197 5.197 28 C -0.079 4.079 29 H 0.107 0.893 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.097 0.903 44 H 0.135 0.865 45 H 0.100 0.900 46 H 0.100 0.900 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 21.321 -4.301 -0.919 21.770 hybrid contribution 0.796 2.172 -1.556 2.788 sum 22.117 -2.129 -2.475 22.357 Atomic orbital electron populations 1.22139 0.95224 1.02267 1.03630 1.21404 0.96749 0.93662 1.02227 1.23121 0.95387 0.96455 0.89615 0.92183 1.22556 0.93735 0.97698 1.01657 1.22422 0.97392 0.97233 0.99788 1.23122 0.91854 0.92212 1.02686 1.61836 0.95852 1.21819 1.34425 1.22916 0.93584 0.92860 0.93846 1.74388 0.94622 1.20833 1.20616 1.74595 1.18194 1.07339 1.12252 1.23283 0.81611 0.98998 0.96671 1.17258 0.90661 0.93460 0.99169 1.20499 0.97636 0.99452 1.08469 1.20451 0.93413 0.97342 0.98236 1.21195 0.94521 1.02929 1.05871 1.17657 0.93629 0.90731 0.89346 1.19510 0.89097 0.96130 1.42263 0.88729 1.26144 0.94473 1.01715 0.91151 1.69690 1.04678 1.34717 1.33622 0.86332 0.80057 0.80497 0.79668 1.19531 1.21525 1.16672 1.21197 0.90060 1.02813 1.02723 1.47137 1.10155 1.32189 1.30186 1.22438 0.96939 0.96545 0.91955 0.89264 0.94036 0.92744 0.91636 0.90654 0.90350 0.89838 0.91046 0.90111 0.92770 0.89011 0.88403 0.88284 0.87822 0.90297 0.86487 0.90018 0.89997 0.87817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 9.18 37.16 0.34 -2.07 16 2 C -0.10 -1.09 5.69 -26.73 -0.15 -1.24 16 3 C 0.06 0.62 2.19 -65.79 -0.14 0.48 16 4 H 0.06 0.62 5.66 -51.93 -0.29 0.33 16 5 C -0.12 -0.81 6.50 -24.87 -0.16 -0.98 16 6 C -0.13 -0.84 6.93 -25.37 -0.18 -1.02 16 7 C 0.03 0.28 6.02 -2.76 -0.02 0.26 16 8 N -0.41 -5.18 5.05 -163.15 -0.82 -6.01 16 9 C 0.32 5.14 4.83 -318.91 -1.54 3.60 16 10 N -0.26 -5.14 10.20 30.31 0.31 -4.83 16 11 N -0.28 -6.08 11.98 32.59 0.39 -5.69 16 12 C 0.26 5.09 7.71 -153.78 -1.18 3.90 16 13 C 0.00 -0.05 5.86 -105.04 -0.62 -0.67 16 14 C -0.24 -4.53 8.77 -38.91 -0.34 -4.88 16 15 C -0.08 -1.51 10.01 -39.72 -0.40 -1.90 16 16 C -0.23 -5.12 7.19 -38.80 -0.28 -5.40 16 17 C 0.09 2.20 5.04 -106.87 -0.54 1.66 16 18 C -0.44 -11.70 9.56 -37.74 -0.36 -12.06 16 19 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 20 C 0.08 2.17 5.40 -17.35 -0.09 2.07 16 21 N -0.80 -21.02 13.93 55.55 0.77 -20.24 16 22 Si 0.91 20.18 24.57 -169.99 -4.18 16.01 16 23 H -0.27 -5.72 6.74 56.52 0.38 -5.34 16 24 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.24 -5.58 6.91 56.52 0.39 -5.19 16 26 C -0.15 -3.44 9.44 -38.46 -0.36 -3.80 16 27 N -0.50 -7.83 3.14 -122.06 -0.38 -8.21 16 28 C 0.06 0.71 7.27 59.85 0.43 1.15 16 29 H 0.09 1.50 4.38 -51.93 -0.23 1.27 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.05 0.53 5.13 -51.93 -0.27 0.26 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.10 1.51 4.84 -52.49 -0.25 1.26 16 41 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.10 2.34 4.99 -52.49 -0.26 2.08 16 43 H 0.29 6.77 8.30 -40.82 -0.34 6.43 16 44 H 0.12 2.79 7.95 -52.49 -0.42 2.38 16 45 H 0.08 0.78 7.38 -51.93 -0.38 0.40 16 46 H 0.08 0.71 5.09 -51.93 -0.26 0.44 16 47 H 0.10 1.17 6.44 -51.93 -0.33 0.83 16 LS Contribution 356.64 15.07 5.37 5.37 Total: -1.00 -29.54 356.64 -10.64 -40.17 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.51 Total: 4.31 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -5.59 Total: -20.89 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.27 Total: -44.98 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.18 Total: 16.01 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.54 -10.64 -40.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646675215.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.847 kcal (2) G-P(sol) polarization free energy of solvation -29.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds